mRNA_H-elongata_contig66118.14203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66118.14203.1
Unique NamemRNA_H-elongata_contig66118.14203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66118.14203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66118contigH-elongata_contig66118:121..456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size212
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66118.14203.1prot_H-elongata_contig66118.14203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66118 121..399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.9619133-CDS-H-elongata_contig66118:120..2541622931049.9619133-CDS-H-elongata_contig66118:120..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 121..254 +
1691679677.3889866-CDS-H-elongata_contig66118:120..2541691679677.3889866-CDS-H-elongata_contig66118:120..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 121..254 +
1622931049.9757051-CDS-H-elongata_contig66118:380..3991622931049.9757051-CDS-H-elongata_contig66118:380..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 381..399 +
1691679677.3970113-CDS-H-elongata_contig66118:380..3991691679677.3970113-CDS-H-elongata_contig66118:380..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 381..399 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.9931214-UTR-H-elongata_contig66118:399..4561622931049.9931214-UTR-H-elongata_contig66118:399..456Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66118 400..456 +
1691679677.4157267-UTR-H-elongata_contig66118:399..4561691679677.4157267-UTR-H-elongata_contig66118:399..456Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66118 400..456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66118.14203.1

>prot_H-elongata_contig66118.14203.1 ID=prot_H-elongata_contig66118.14203.1|Name=mRNA_H-elongata_contig66118.14203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
GRFRSRLLPDLTGGFHFSPLKTDDSLSTWVVTIVAAVLRAAPSTRSTRMR
*
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mRNA from alignment at H-elongata_contig66118:121..456+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66118.14203.1 ID=mRNA_H-elongata_contig66118.14203.1|Name=mRNA_H-elongata_contig66118.14203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig66118:121..456+ (Himanthalia elongata Himel1 dioecious)
GGTCGGTTCCGCTCGAGGCTCCTTCCTGATCTGACTGGAGGTTTTCACTT
TTCACCCCTGAAAACGGACGACTCTTTGAGCACTTGGGTCGTCACCATTG
TAGCTGCTGTTCTGCGCGCTGCACCATCCACAAGGCAAGGATAGAGTTAT
AGCGCCAGCAGCGTCTTTCACAAAGGAGGAAACATTGCAACTCAGACTGA
TTTCCCACCTCTGGACTTTGCGATTCTATCACACCCATGCCCGACGCAAC
GTCCCCTCAGGAGCACCAGGATGCGGTAGCAACCCTTACGTCGACGGCCA
TGGAAGCGTCAGCGAGGGCGGTGGGTGGGGCGGACC
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Coding sequence (CDS) from alignment at H-elongata_contig66118:121..456+

>mRNA_H-elongata_contig66118.14203.1 ID=mRNA_H-elongata_contig66118.14203.1|Name=mRNA_H-elongata_contig66118.14203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig66118:121..456+ (Himanthalia elongata Himel1 dioecious)
GGTCGGTTCCGCTCGAGGCTCCTTCCTGATCTGACTGGAGGTTTTCACTT
TTCACCCCTGAAAACGGACGACTCTTTGAGCACTTGGGTCGTCACCATTG
TAGCTGCTGTTCTGCGCGCTGCACCATCCACAAGGGTCGGTTCCGCTCGA
GGCTCCTTCCTGATCTGACTGGAGGTTTTCACTTTTCACCCCTGAAAACG
GACGACTCTTTGAGCACTTGGGTCGTCACCATTGTAGCTGCTGTTCTGCG
CGCTGCACCATCCACAAGGAGCACCAGGATGCGGTAGGAGCACCAGGATG
CGGTAG
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