mRNA_H-elongata_contig66110.14202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66110.14202.1
Unique NamemRNA_H-elongata_contig66110.14202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66110.14202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66110contigH-elongata_contig66110:55..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-05_003820.1
Exons2
Model size1521
Cds size1521
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.885357-CDS-H-elongata_contig66110:54..14681622931049.885357-CDS-H-elongata_contig66110:54..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66110 55..1468 +
1691679677.3727455-CDS-H-elongata_contig66110:54..14681691679677.3727455-CDS-H-elongata_contig66110:54..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66110 55..1468 +
1622931049.9180634-CDS-H-elongata_contig66110:1501..16081622931049.9180634-CDS-H-elongata_contig66110:1501..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66110 1502..1608 +
1691679677.3808203-CDS-H-elongata_contig66110:1501..16081691679677.3808203-CDS-H-elongata_contig66110:1501..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66110 1502..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66110.14202.1prot_H-elongata_contig66110.14202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66110 55..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66110.14202.1

>prot_H-elongata_contig66110.14202.1 ID=prot_H-elongata_contig66110.14202.1|Name=mRNA_H-elongata_contig66110.14202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=507bp
HRAAITAAGNGGLLNEALQLLCDMKNDPALEVDVPSYNAAITACGRCRRL
EPALALLEEMKKSSSGGGPPLSPGVITLGACLQACASCKDWRAALDLLHE
APEALGVSPDSLCYASAISACAKAGRWEKGVALFREITVDRVGFGPDALT
YSAVIVACGYGGRWEMSLRFLRQMEEEAGEDGGGEEGVRPDVACYNSAIS
ACARSAQADQALSLLREMQAKAKLAEGGISGGGKSSSNKGNKGNSNGDDD
RKKRGNKSGVVVKPNVVSYNAAINALGAAGRWVEALGLLKEMVARGISPS
ASTYTACIVACGSAGEWKKALDLLEAMRKIDGVQLTLGSYNAAMKACGQA
DRGEEARALLRSMSMSAGASGGIEPDASTYTACIAASGDGEHAVELLREM
SARGLAPNTITYNAAITATGRGGDWAQALSLLREMPPAGIAAPDTVSYNS
AIKALAGAGEWERAVGLLREMGGSGSGRVRADDASYAMVVKACETAGRYA
EAATLLA
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mRNA from alignment at H-elongata_contig66110:55..1608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66110.14202.1 ID=mRNA_H-elongata_contig66110.14202.1|Name=mRNA_H-elongata_contig66110.14202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1554bp|location=Sequence derived from alignment at H-elongata_contig66110:55..1608+ (Himanthalia elongata Himel1 dioecious)
CACAGAGCGGCGATCACCGCCGCTGGAAACGGGGGTCTCCTCAATGAGGC
ACTGCAGCTCCTGTGCGACATGAAGAACGACCCCGCCCTGGAGGTGGATG
TGCCCAGCTACAACGCGGCCATTACCGCCTGCGGGCGCTGCCGGCGGCTA
GAACCGGCTCTGGCCCTGTTGGAGGAGATGAAGAAGAGTTCGTCAGGGGG
AGGACCCCCTCTCTCGCCAGGGGTGATCACGCTGGGGGCTTGTCTGCAGG
CGTGCGCGAGCTGCAAGGACTGGCGGGCGGCCTTGGACCTTCTCCACGAG
GCGCCGGAAGCGCTGGGCGTGTCTCCAGACTCGCTGTGCTACGCTTCAGC
GATCTCGGCGTGCGCGAAGGCCGGCCGGTGGGAGAAGGGGGTGGCCCTAT
TCCGGGAGATCACGGTGGATCGGGTCGGGTTCGGGCCGGACGCGTTAACC
TACTCCGCCGTGATCGTGGCGTGCGGCTACGGGGGACGCTGGGAGATGTC
CCTGCGGTTCCTGCGACAGATGGAGGAGGAGGCGGGGGAGGATGGGGGAG
GGGAAGAAGGCGTGAGGCCGGACGTGGCGTGCTACAACAGCGCGATCTCG
GCCTGTGCGAGAAGCGCGCAGGCGGACCAGGCGCTGTCGCTGCTTCGGGA
GATGCAGGCGAAGGCGAAGTTGGCGGAGGGTGGGATCAGTGGCGGCGGCA
AAAGCAGCAGCAATAAGGGTAATAAGGGCAACAGTAATGGTGACGATGAT
CGTAAAAAGAGAGGCAACAAGAGCGGGGTCGTGGTGAAGCCCAATGTGGT
GTCGTACAACGCCGCGATCAACGCCCTGGGGGCTGCCGGGCGGTGGGTTG
AAGCGCTGGGATTGCTGAAGGAGATGGTTGCGCGCGGGATTTCCCCGTCC
GCGTCGACCTATACAGCGTGCATTGTGGCGTGCGGGTCCGCGGGTGAGTG
GAAGAAAGCCCTGGACCTTCTGGAGGCCATGCGTAAGATCGACGGGGTCC
AGCTCACGTTGGGTAGCTACAACGCCGCGATGAAGGCGTGCGGGCAGGCG
GACCGTGGAGAGGAGGCCAGGGCGCTGCTTAGGTCGATGTCAATGTCGGC
GGGAGCGTCGGGCGGGATCGAGCCGGACGCGAGCACCTATACGGCGTGCA
TCGCGGCCTCCGGGGACGGAGAGCATGCGGTGGAGCTCCTGCGAGAGATG
TCCGCCAGGGGCCTGGCGCCCAACACGATCACTTACAACGCCGCCATTAC
CGCGACGGGTCGGGGCGGAGACTGGGCCCAGGCGCTATCCCTCCTGCGGG
AGATGCCCCCGGCCGGGATCGCTGCACCGGACACCGTCAGCTACAACTCC
GCGATCAAGGCGCTGGCGGGTGCCGGGGAATGGGAGAGAGCGGTGGGCCT
ACTGCGGGAAATGGGTAGCGGAAAGGATCCAGGGACGGGGTGGCGAGGGG
GCAGTGGGAGTGGCAGAGTCCGCGCGGACGATGCGAGCTACGCGATGGTG
GTTAAGGCTTGCGAGACGGCGGGGCGGTACGCCGAAGCCGCGACGCTGCT
GGCG
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Coding sequence (CDS) from alignment at H-elongata_contig66110:55..1608+

>mRNA_H-elongata_contig66110.14202.1 ID=mRNA_H-elongata_contig66110.14202.1|Name=mRNA_H-elongata_contig66110.14202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3042bp|location=Sequence derived from alignment at H-elongata_contig66110:55..1608+ (Himanthalia elongata Himel1 dioecious)
CACAGAGCGGCGATCACCGCCGCTGGAAACGGGGGTCTCCTCAATGAGGC
ACTGCAGCTCCTGTGCGACATGAAGAACGACCCCGCCCTGGAGGTGGATG
TGCCCAGCTACAACGCGGCCATTACCGCCTGCGGGCGCTGCCGGCGGCTA
GAACCGGCTCTGGCCCTGTTGGAGGAGATGAAGAAGAGTTCGTCAGGGGG
AGGACCCCCTCTCTCGCCAGGGGTGATCACGCTGGGGGCTTGTCTGCAGG
CGTGCGCGAGCTGCAAGGACTGGCGGGCGGCCTTGGACCTTCTCCACGAG
GCGCCGGAAGCGCTGGGCGTGTCTCCAGACTCGCTGTGCTACGCTTCAGC
GATCTCGGCGTGCGCGAAGGCCGGCCGGTGGGAGAAGGGGGTGGCCCTAT
TCCGGGAGATCACGGTGGATCGGGTCGGGTTCGGGCCGGACGCGTTAACC
TACTCCGCCGTGATCGTGGCGTGCGGCTACGGGGGACGCTGGGAGATGTC
CCTGCGGTTCCTGCGACAGATGGAGGAGGAGGCGGGGGAGGATGGGGGAG
GGGAAGAAGGCGTGAGGCCGGACGTGGCGTGCTACAACAGCGCGATCTCG
GCCTGTGCGAGAAGCGCGCAGGCGGACCAGGCGCTGTCGCTGCTTCGGGA
GATGCAGGCGAAGGCGAAGTTGGCGGAGGGTGGGATCAGTGGCGGCGGCA
AAAGCAGCAGCAATAAGGGTAATAAGGGCAACAGTAATGGTGACGATGAT
CGTAAAAAGAGAGGCAACAAGAGCGGGGTCGTGGTGAAGCCCAATGTGGT
GTCGTACAACGCCGCGATCAACGCCCTGGGGGCTGCCGGGCGGTGGGTTG
AAGCGCTGGGATTGCTGAAGGAGATGGTTGCGCGCGGGATTTCCCCGTCC
GCGTCGACCTATACAGCGTGCATTGTGGCGTGCGGGTCCGCGGGTGAGTG
GAAGAAAGCCCTGGACCTTCTGGAGGCCATGCGTAAGATCGACGGGGTCC
AGCTCACGTTGGGTAGCTACAACGCCGCGATGAAGGCGTGCGGGCAGGCG
GACCGTGGAGAGGAGGCCAGGGCGCTGCTTAGGTCGATGTCAATGTCGGC
GGGAGCGTCGGGCGGGATCGAGCCGGACGCGAGCACCTATACGGCGTGCA
TCGCGGCCTCCGGGGACGGAGAGCATGCGGTGGAGCTCCTGCGAGAGATG
TCCGCCAGGGGCCTGGCGCCCAACACGATCACTTACAACGCCGCCATTAC
CGCGACGGGTCGGGGCGGAGACTGGGCCCAGGCGCTATCCCTCCTGCGGG
AGATGCCCCCGGCCGGGATCGCTGCACCGGACACCGTCAGCTACAACTCC
GCGATCAAGGCGCTGGCGGGTGCCGGGGAATGGGAGAGAGCGGTGGGCCT
ACTGCGGGAAATGGCACAGAGCGGCGATCACCGCCGCTGGAAACGGGGGT
CTCCTCAATGAGGCACTGCAGCTCCTGTGCGACATGAAGAACGACCCCGC
CCTGGAGGTGGATGTGCCCAGCTACAACGCGGCCATTACCGCCTGCGGGC
GCTGCCGGCGGCTAGAACCGGCTCTGGCCCTGTTGGAGGAGATGAAGAAG
AGTTCGTCAGGGGGAGGACCCCCTCTCTCGCCAGGGGTGATCACGCTGGG
GGCTTGTCTGCAGGCGTGCGCGAGCTGCAAGGACTGGCGGGCGGCCTTGG
ACCTTCTCCACGAGGCGCCGGAAGCGCTGGGCGTGTCTCCAGACTCGCTG
TGCTACGCTTCAGCGATCTCGGCGTGCGCGAAGGCCGGCCGGTGGGAGAA
GGGGGTGGCCCTATTCCGGGAGATCACGGTGGATCGGGTCGGGTTCGGGC
CGGACGCGTTAACCTACTCCGCCGTGATCGTGGCGTGCGGCTACGGGGGA
CGCTGGGAGATGTCCCTGCGGTTCCTGCGACAGATGGAGGAGGAGGCGGG
GGAGGATGGGGGAGGGGAAGAAGGCGTGAGGCCGGACGTGGCGTGCTACA
ACAGCGCGATCTCGGCCTGTGCGAGAAGCGCGCAGGCGGACCAGGCGCTG
TCGCTGCTTCGGGAGATGCAGGCGAAGGCGAAGTTGGCGGAGGGTGGGAT
CAGTGGCGGCGGCAAAAGCAGCAGCAATAAGGGTAATAAGGGCAACAGTA
ATGGTGACGATGATCGTAAAAAGAGAGGCAACAAGAGCGGGGTCGTGGTG
AAGCCCAATGTGGTGTCGTACAACGCCGCGATCAACGCCCTGGGGGCTGC
CGGGCGGTGGGTTGAAGCGCTGGGATTGCTGAAGGAGATGGTTGCGCGCG
GGATTTCCCCGTCCGCGTCGACCTATACAGCGTGCATTGTGGCGTGCGGG
TCCGCGGGTGAGTGGAAGAAAGCCCTGGACCTTCTGGAGGCCATGCGTAA
GATCGACGGGGTCCAGCTCACGTTGGGTAGCTACAACGCCGCGATGAAGG
CGTGCGGGCAGGCGGACCGTGGAGAGGAGGCCAGGGCGCTGCTTAGGTCG
ATGTCAATGTCGGCGGGAGCGTCGGGCGGGATCGAGCCGGACGCGAGCAC
CTATACGGCGTGCATCGCGGCCTCCGGGGACGGAGAGCATGCGGTGGAGC
TCCTGCGAGAGATGTCCGCCAGGGGCCTGGCGCCCAACACGATCACTTAC
AACGCCGCCATTACCGCGACGGGTCGGGGCGGAGACTGGGCCCAGGCGCT
ATCCCTCCTGCGGGAGATGCCCCCGGCCGGGATCGCTGCACCGGACACCG
TCAGCTACAACTCCGCGATCAAGGCGCTGGCGGGTGCCGGGGAATGGGAG
AGAGCGGTGGGCCTACTGCGGGAAATGGGGGGCAGTGGGAGTGGCAGAGT
CCGCGCGGACGATGCGAGCTACGCGATGGTGGTTAAGGCTTGCGAGACGG
CGGGGCGGTACGCCGAAGCCGCGACGCTGCTGGCGGGGGCAGTGGGAGTG
GCAGAGTCCGCGCGGACGATGCGAGCTACGCGATGGTGGTTAAGGCTTGC
GAGACGGCGGGGCGGTACGCCGAAGCCGCGACGCTGCTGGCG
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