mRNA_H-elongata_contig66097.14201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66097.14201.1
Unique NamemRNA_H-elongata_contig66097.14201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66097.14201.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.170e-17
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 VSKGLKWVQSWRAEGETGNGEQGQAMSPRGRRSGPRRSSIFGSPLKI-DETLVQDNVEVDLGR-GTPPXXXXXXXXXXGLSTSELRRKSPSSGGTLESSFGIGILGRG 318
            VSKGLKWVQSWRAEG+TG+GEQGQ MSPRGR++GPRRSSIFGSP     ET  + + E      G+            G +     R S       +S+FG  I+GRG
Sbjct:  575 VSKGLKWVQSWRAEGQTGSGEQGQVMSPRGRKAGPRRSSIFGSPFYDGQETEQRSDPETSTAACGSSSTRVAGVGCRAGKNGHRRSRSS------FDSNFGTPIVGRG 676
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66097.14201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBX9_ECTSI2.170e-1749.07Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66097contigH-elongata_contig66097:738..1891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue4.5e-15
Seed eggNOG ortholog2880.D8LBX9
KEGG koko:K21853
EggNOG free text desc.memory T cell proliferation
EggNOG OGsKOG1997@1,KOG1997@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.7981899-CDS-H-elongata_contig66097:738..10381622931049.7981899-CDS-H-elongata_contig66097:738..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66097 739..1038 -
1691679677.352045-CDS-H-elongata_contig66097:738..10381691679677.352045-CDS-H-elongata_contig66097:738..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66097 739..1038 -
1622931049.815093-CDS-H-elongata_contig66097:1759..18911622931049.815093-CDS-H-elongata_contig66097:1759..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66097 1760..1891 -
1691679677.3618214-CDS-H-elongata_contig66097:1759..18911691679677.3618214-CDS-H-elongata_contig66097:1759..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66097 1760..1891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66097.14201.1prot_H-elongata_contig66097.14201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66097 739..1891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66097.14201.1

>prot_H-elongata_contig66097.14201.1 ID=prot_H-elongata_contig66097.14201.1|Name=mRNA_H-elongata_contig66097.14201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
VSKGLKWVQSWRAEGETGNGEQGQAMSPRGRRSGPRRSSIFGSPLKIDET
LVQDNVEVDLGRGTPPAPQPQQQQQQGLSTSELRRKSPSSGGTLESSFGI
GILGRGSLSRGSDVLPNTNSNKSSNTSSNSNSNSNSNSSNGVFS
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mRNA from alignment at H-elongata_contig66097:738..1891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66097.14201.1 ID=mRNA_H-elongata_contig66097.14201.1|Name=mRNA_H-elongata_contig66097.14201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1154bp|location=Sequence derived from alignment at H-elongata_contig66097:738..1891- (Himanthalia elongata Himel1 dioecious)
GTGTCCAAGGGGCTGAAGTGGGTGCAGAGCTGGCGGGCAGAGGGGGAGAC
GGGGAACGGGGAGCAGGGCCAAGCGATGTCGCCGCGGGGGCGCAGGAGCG
GTCCACGGCGATCCTCCATCTTCGGCTCCCCGGTGAGCAAGAGGAGAGCT
GTGTTAAGGGGGCGAGAGAGTATAAAACAATGAGAGGAGGCGGTTCTCCC
ACAGGGTCCGGGGGAGGAAGGTTTTGGAGAGCTCCGGTTCGGTGTTGGTG
ATCGTTGTTGTTGCCTAGTGTGTGGAGCATAAATTGTCGCCTGAGCGCAG
GTTTGAATGTCGGGCGCGTTTCTCGATGCTCGCGCGGAGGAGAAATACCT
TTGTAAGAGTGCTCTAATGCTCTGGCAGCGACCATCCCATACATTATTTC
TTTGGACTGGGGTGGGGTGGAGGAGAGGGGAGGGGAGGCAGCGAGCAGAC
TAGTGTTTTAAAGGACTCGAGCGTTGAGGCTCGAGACGTGATGGCATGGT
GTGAACCTGTTCGGCTTGATTTTGCCGCCATTCGACAGACGGTGGCAACG
GCGGTATGTAAGGTGGGGTAAGGTATAGCGGAGAGAAGCCGTATGATGCT
CCATGGGGAAGTTCTCATGCCGTGAATTGGGTCAGGTGCTCTGCTCTGCT
CGTGGGAGAGCAGTCCGCGTGTGGTAGTGGTTTGACCTGTCGTCCGGGAA
GGTATATCGGGGAAAAAAGGAAGTCCGGGGTCTTGGGAGTCTACAGTCTA
CCTTGTTATTGATGAGAAAAGGAAATAAGAAAAACCGCCTGATTCACTCC
GATCGCGCGCTTTCTCCTGTTTTCTCTTGCCATTTGTGTGCCTGCCGGGA
CAGTTGAAGATTGACGAGACTCTTGTCCAAGATAATGTCGAGGTTGATTT
GGGACGAGGAACACCGCCAGCGCCGCAGCCGCAGCAGCAGCAGCAGCAAG
GGCTGTCTACATCGGAACTGAGAAGAAAGTCGCCTTCTTCCGGCGGTACC
TTGGAGTCGAGCTTCGGCATCGGTATCTTGGGGCGAGGATCGTTGTCGAG
AGGGTCGGATGTCCTCCCGAACACGAACAGCAACAAGAGCAGTAATACCA
GCAGCAATAGTAACAGCAATAGCAATAGCAATAGCAGCAACGGTGTCTTC
TCTG
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Coding sequence (CDS) from alignment at H-elongata_contig66097:738..1891-

>mRNA_H-elongata_contig66097.14201.1 ID=mRNA_H-elongata_contig66097.14201.1|Name=mRNA_H-elongata_contig66097.14201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig66097:738..1891- (Himanthalia elongata Himel1 dioecious)
GTGTCCAAGGGGCTGAAGTGGGTGCAGAGCTGGCGGGCAGAGGGGGAGAC
GGGGAACGGGGAGCAGGGCCAAGCGATGTCGCCGCGGGGGCGCAGGAGCG
GTCCACGGCGATCCTCCATCTTCGGCTCCCCGGTGTCCAAGGGGCTGAAG
TGGGTGCAGAGCTGGCGGGCAGAGGGGGAGACGGGGAACGGGGAGCAGGG
CCAAGCGATGTCGCCGCGGGGGCGCAGGAGCGGTCCACGGCGATCCTCCA
TCTTCGGCTCCCCGTTGAAGATTGACGAGACTCTTGTCCAAGATAATGTC
GAGGTTGATTTGGGACGAGGAACACCGCCAGCGCCGCAGCCGCAGCAGCA
GCAGCAGCAAGGGCTGTCTACATCGGAACTGAGAAGAAAGTCGCCTTCTT
CCGGCGGTACCTTGGAGTCGAGCTTCGGCATCGGTATCTTGGGGCGAGGA
TCGTTGTCGAGAGGGTCGGATGTCCTCCCGAACACGAACAGCAACAAGAG
CAGTAATACCAGCAGCAATAGTAACAGCAATAGCAATAGCAATAGCAGCA
ACGGTGTCTTCTCTTTGAAGATTGACGAGACTCTTGTCCAAGATAATGTC
GAGGTTGATTTGGGACGAGGAACACCGCCAGCGCCGCAGCCGCAGCAGCA
GCAGCAGCAAGGGCTGTCTACATCGGAACTGAGAAGAAAGTCGCCTTCTT
CCGGCGGTACCTTGGAGTCGAGCTTCGGCATCGGTATCTTGGGGCGAGGA
TCGTTGTCGAGAGGGTCGGATGTCCTCCCGAACACGAACAGCAACAAGAG
CAGTAATACCAGCAGCAATAGTAACAGCAATAGCAATAGCAATAGCAGCA
ACGGTGTCTTCTCT
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