mRNA_H-elongata_contig6604.14195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6604.14195.1
Unique NamemRNA_H-elongata_contig6604.14195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 75.1 bits (183), Expect = 1.340e-13
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   10 LPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
            +P  EVL+R D   +   + +  L +AG VARM D+RLP +++ GE+  GKR +G   KR +  +     AF I+P  W  AAQD  +W   ++ GA+ +
Sbjct:  812 VPDTEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911          
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.600e-13
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
            P+ EVL R  C  VE+ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   + TG + F
Sbjct:  275 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 373          
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.800e-13
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
            P+ EVL R  C  VE+ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   + TG + F
Sbjct:  561 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 659          
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 72.8 bits (177), Expect = 4.680e-13
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
            P+ EVL R  C  VE+ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D   W   + TG  + 
Sbjct:  208 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306          
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9
Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   10 LPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEV 306
            +P  EVL R +   V   + K    +AG V RM D R+P +++ GE+  GKR  G+P  R +  +     +  I    W   A D P+W   V  GA++
Sbjct:   89 IPDTEVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQL 187          
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 4.390e-8
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEH 198
            P+ EVL R  C  +E+ + KR L +AG + RM D+RLP I++ GE+  G R  G+P KR  H
Sbjct:  291 PHSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR1.340e-1337.00Reverse transcriptase domain-containing protein n=... [more]
A0A6S7K883_PARCT1.600e-1335.35RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT1.800e-1335.35RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JKI9_PARCT4.680e-1334.34Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8J9Z756_BRALA1.290e-932.32Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6S7JBE9_PARCT4.390e-845.16Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6604contigH-elongata_contig6604:168..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog7739.XP_002599408.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.2840912-UTR-H-elongata_contig6604:167..1731622931049.2840912-UTR-H-elongata_contig6604:167..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6604 168..173 +
1691679677.146265-UTR-H-elongata_contig6604:167..1731691679677.146265-UTR-H-elongata_contig6604:167..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6604 168..173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.3058684-CDS-H-elongata_contig6604:173..4761622931049.3058684-CDS-H-elongata_contig6604:173..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6604 174..476 +
1691679677.157157-CDS-H-elongata_contig6604:173..4761691679677.157157-CDS-H-elongata_contig6604:173..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6604 174..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6604.14195.1prot_H-elongata_contig6604.14195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6604 174..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6604.14195.1

>prot_H-elongata_contig6604.14195.1 ID=prot_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVG
GKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEV
F
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mRNA from alignment at H-elongata_contig6604:168..476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6604.14195.1 ID=mRNA_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig6604:168..476+ (Himanthalia elongata Himel1 dioecious)
TACCACATGCTCCCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTG CGTTGAGGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCG CGCGCATGTACGACGATCGTCTTCCCAACATCATCATGCGTGGCGAAATG GTCGGAGGGAAGAGAAAACGGGGCCAACCTGCGAAACGCCTCGAACACCG CGTCACGGAATACTGCACTGCTTTCGGGATCGACCCCAAGTGTTGGATGC GGGCCGCCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCT GAAGTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig6604:168..476+

>mRNA_H-elongata_contig6604.14195.1 ID=mRNA_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6604:168..476+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCGTTGA
GGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCGCGCGCA
TGTACGACGATCGTCTTCCCAACATCATCATGCGTGGCGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAACCTGCGAAACGCCTCGAACACCGCGTCAC
GGAATACTGCACTGCTTTCGGGATCGACCCCAAGTGTTGGATGCGGGCCG
CCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCTGAAGTC
TTCATGCTCCCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCGT
TGAGGCTGCTGTGATGAAGCGCATCCTCCACTACGCCGGCCGCGTCGCGC
GCATGTACGACGATCGTCTTCCCAACATCATCATGCGTGGCGAAATGGTC
GGAGGGAAGAGAAAACGGGGCCAACCTGCGAAACGCCTCGAACACCGCGT
CACGGAATACTGCACTGCTTTCGGGATCGACCCCAAGTGTTGGATGCGGG
CCGCCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCTGAA
GTCTTC
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