mRNA_H-elongata_contig66007.14189.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A1X7U173_AMPQE (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U173_AMPQE) HSP 1 Score: 88.2 bits (217), Expect = 1.350e-18 Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 RRTMGMKVVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQVQ 240
+RT G+ WK K WIS +KET S+L + S FPP+A+EA+ ++L RC+R+ P QDTGGFFVA+ SKT P+ WQVQ
Sbjct: 355 KRTNGVNT-WKVLTKNGEWISSYKETPSNLLHTVHSSMFPPTALEADTYQLNRCIRIFPHQQDTGGFFVALLSKTSPLPWQVQ 436
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 3.700e-16 Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 64 ETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
E ++ R ++PSFFPP +A+ +LERC+R+LPQDQDTGGFFVAV KTGPI+WQ
Sbjct: 332 EVDTATTRKMIPSFFPPDEDKAKALRLERCMRMLPQDQDTGGFFVAVMVKTGPILWQ 388
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 9.490e-16 Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 64 ETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
E ++ R ++PSFFPP +A+ +LERC+R+LPQDQDTGGFFV+V KTGPI+WQ
Sbjct: 497 EVDTATTRKMIPSFFPPDEDKAKALRLERCMRMLPQDQDTGGFFVSVMVKTGPILWQ 553
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A2T7NHK6_POMCA (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NHK6_POMCA) HSP 1 Score: 72.0 bits (175), Expect = 6.580e-13 Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 34 KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
KK WI ++ + I S FPP+A EAE FKL RC+RVLP QDTGGFF+AV K P+ W
Sbjct: 382 KKGEWIHSIEDVPLHMKSQITKSMFPPTAEEAERFKLHRCIRVLPHQQDTGGFFIAVLQKIQPLPW 447
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: UPI0005CF3494 (LOW QUALITY PROTEIN: tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CF3494) HSP 1 Score: 69.7 bits (169), Expect = 4.250e-12 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 46 WISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
+ + W++ L I P FPP EAE F LERC+R+LP QDTGGFFVAV K P+ W+
Sbjct: 376 YFTSWEKVPEQLQTQIRPKMFPPKPEEAEHFHLERCMRILPHHQDTGGFFVAVLVKLKPLPWE 438
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: V4ABW0_LOTGI (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ABW0_LOTGI) HSP 1 Score: 69.3 bits (168), Expect = 5.790e-12 Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 22 VVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
WK K+ +W ++ + L I S FPP+ EAEV +LE+CVR+LP Q+TGGFF+AVF KT + W
Sbjct: 340 TTWKVMSKEGTWYDKFDDLPQLLTNQIRHSMFPPTPEEAEVMQLEKCVRILPHHQNTGGFFIAVFQKTKTLPW 412
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6P3XKD6_DINQU (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3XKD6_DINQU) HSP 1 Score: 69.3 bits (168), Expect = 5.840e-12 Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 46 WISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
+ + W+E I P FPP A EA F LERC+R+LP QDTGGFFVAV K P+ W+
Sbjct: 378 YYNAWEEVPEQWQTQIRPKMFPPPADEASKFHLERCMRILPHHQDTGGFFVAVLEKVKPLPWE 440
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: B3RJG2_TRIAD (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Trichoplax TaxID=10227 RepID=B3RJG2_TRIAD) HSP 1 Score: 68.9 bits (167), Expect = 7.940e-12 Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query: 1 RRTMGMKVVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
+R GM WK K+ +W + + + S I PS FPPS EA+ L+RC+R+LPQDQ+TGGFFVAV K + W
Sbjct: 342 KRRSGMNT-WKVLSKQGNWYNNFSDVPVSDSAMIKPSMFPPSESEAQEMHLDRCLRILPQDQNTGGFFVAVLQKVDHLTW 420
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A8E0SA22_9TREM (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0SA22_9TREM) HSP 1 Score: 68.6 bits (166), Expect = 1.090e-11 Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 25 VWKKKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQVQ 240
V +K +W R+++ +SL I PS FPP V LERC+RVLP DQ+TGGFF+AV K P+ W Q
Sbjct: 382 VMTRKGAWFERFEDVPASLHSNIRPSMFPPPNVSE--LHLERCMRVLPHDQNTGGFFIAVLEKIAPLPWLKQ 451
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6L5DHL3_9INSE (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DHL3_9INSE) HSP 1 Score: 68.2 bits (165), Expect = 1.480e-11 Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 49 ISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
+ ++E +L I P FPP+ +A F L+RCVR+LP QDTGGFFVAVF K GP+ W+
Sbjct: 364 FNSFEEVPENLHTQIRPHLFPPTPDKAAEFHLKRCVRILPHMQDTGGFFVAVFEKHGPLPWE 425 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66007.14189.1 >prot_H-elongata_contig66007.14189.1 ID=prot_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp MGMKVVWKKKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRback to top mRNA from alignment at H-elongata_contig66007:442..1330+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66007.14189.1 ID=mRNA_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=889bp|location=Sequence derived from alignment at H-elongata_contig66007:442..1330+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66007:442..1330+ >mRNA_H-elongata_contig66007.14189.1 ID=mRNA_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig66007:442..1330+ (Himanthalia elongata Himel1 dioecious)back to top |