mRNA_H-elongata_contig65915.14176.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65915.14176.1
Unique NamemRNA_H-elongata_contig65915.14176.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65915.14176.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.860e-55
Identity = 113/176 (64.20%), Postives = 134/176 (76.14%), Query Frame = 1 
Query:    1 MELPVV-FLLKVLNILCGSDELLSSSTGRDLLCRCLADAFEDVPLSETEHSDRRKAGRGESSFEWCFDRLEDFASTVQELPLAVLLVQVMEAVATARVRFLEA---GSGDS-EGGRSMGDA-SLSPHEKLAALCLTLLQRDWSGGDIKFVYKSSTVGMLVRTHLRWAKDPLQALEV 510
            M LP + F LKVL+ILCGSDE+L S  GR++L  CLADAF D  L E+    + +    E+ F  CFD+LEDFASTVQ+LPLAV LVQVMEAVATARVR L A   G G +  GG+  G+   LSPH+KL++LCLTLLQRDWS GD+KFVYKSST+G+LVR HLRWAKDPLQA+EV
Sbjct:  964 MLLPCLDFTLKVLSILCGSDEILGSEAGRNVLGECLADAFYDGDLDESLDGSQNRPAADEA-FVMCFDKLEDFASTVQQLPLAVQLVQVMEAVATARVRCLAAQPDGRGAAARGGQRRGETPELSPHQKLSSLCLTLLQRDWSEGDLKFVYKSSTLGVLVRAHLRWAKDPLQAVEV 1138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65915.14176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0C8_ECTSI1.860e-5564.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65915contigH-elongata_contig65915:72..2970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue4.5e-49
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFanconi anaemia protein FANCD2
Ec32 orthologEc-02_000930.1
Exons4
Model size534
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65915.14176.1prot_H-elongata_contig65915.14176.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65915 72..2970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.7242644-CDS-H-elongata_contig65915:71..1801622931046.7242644-CDS-H-elongata_contig65915:71..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 72..180 -
1691679676.072696-CDS-H-elongata_contig65915:71..1801691679676.072696-CDS-H-elongata_contig65915:71..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 72..180 -
1622931046.7429926-CDS-H-elongata_contig65915:852..10161622931046.7429926-CDS-H-elongata_contig65915:852..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 853..1016 -
1691679676.082824-CDS-H-elongata_contig65915:852..10161691679676.082824-CDS-H-elongata_contig65915:852..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 853..1016 -
1622931046.7645426-CDS-H-elongata_contig65915:1951..20911622931046.7645426-CDS-H-elongata_contig65915:1951..2091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 1952..2091 -
1691679676.0909672-CDS-H-elongata_contig65915:1951..20911691679676.0909672-CDS-H-elongata_contig65915:1951..2091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 1952..2091 -
1622931046.7808444-CDS-H-elongata_contig65915:2849..29701622931046.7808444-CDS-H-elongata_contig65915:2849..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 2850..2970 -
1691679676.0989442-CDS-H-elongata_contig65915:2849..29701691679676.0989442-CDS-H-elongata_contig65915:2849..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65915 2850..2970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65915.14176.1

>prot_H-elongata_contig65915.14176.1 ID=prot_H-elongata_contig65915.14176.1|Name=mRNA_H-elongata_contig65915.14176.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MELPVVFLLKVLNILCGSDELLSSSTGRDLLCRCLADAFEDVPLSETEHS
DRRKAGRGESSFEWCFDRLEDFASTVQELPLAVLLVQVMEAVATARVRFL
EAGSGDSEGGRSMGDASLSPHEKLAALCLTLLQRDWSGGDIKFVYKSSTV
GMLVRTHLRWAKDPLQALEVNRMKKTS*
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mRNA from alignment at H-elongata_contig65915:72..2970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65915.14176.1 ID=mRNA_H-elongata_contig65915.14176.1|Name=mRNA_H-elongata_contig65915.14176.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2899bp|location=Sequence derived from alignment at H-elongata_contig65915:72..2970- (Himanthalia elongata Himel1 dioecious)
ATGGAACTCCCTGTTGTGTTCCTCCTCAAGGTTCTGAACATCTTATGCGG
TTCTGACGAACTGCTCAGCTCCTCTACGGGGCGCGATCTCCTTTGCCGAT
GCCTCGCAGACGCCTTCGAAGGTGAGGCATGAGACAGCAGCATTTTGTGA
CGGGTGTTGGGCGCACGCGTTGCCCCAGAAGCCAGCTGCGCGCTGAAGTG
TTTTTTTAGGTCTCTTTTTGACGCGTAGCTGCAAGCATTGCACAAGTCGC
TCTTTTTAGCTTGTCTGTCTTTGGAAGGAGGGGATCATATAATATATTGT
CTGCAACTTTGGCAACGTAGATTAAGTTGAGACAGCGTCACCTATCTTTA
GTTTTGATTGCCCTCGTATGATAGAGTAGCGCTATTAATTTATTTTCATT
TATCTTTTTTAAATATATGAACTCATTCTAGCCTTCCGAACATCCACGCC
TTATTTTCATTTAATATGATGATGCATAAAAAAAAAATCACCTTTTGTGC
TGTTTGGCCCTGGTCCAGTCCAGTTCCGTCCCGTCCCTTCTCGCGTAGGA
ATGGTTTTTGTTTTTGTTTTCCTTCTGCTTTTGAGTTTGCAGGCAGCAGC
GCTCTTTTGTAATGCACCGTCCTGTTCTTTTAGCTCTCACTGTAGGGGGG
GGAAAGGAGGGGGGGCGGGGGGTATATTAACTGTTCGTCGTGCGATGGAT
CTCGAGTTCTGCGGCAGCACCCCCTGTATGTTGTATACTGTATAGGGCAT
AAAATTTACTGTCTAATGTACGTAGTCACCGCGGGCGCCATTGATGTCGA
GGTAAAATGTTTATTTTGACTCTCTCTTTCGTGCCTCGGGGGGGGGTTAT
GGTATGGCACGGTATGGCAGGCGTCCAAGACGTACCGTTGTCCGAGACAG
AGCATTCAGATAGAAGGAAGGCAGGAAGGGGAGAGTCTTCGTTCGAGTGG
TGCTTCGACAGGCTAGAAGACTTCGCGTCCACGGTGCAGGAACTCCCGCT
GGCGGTGCTGCTCGTGCAGGTCAGGGGTGGCTGTGCCTTAGAGCCTATCG
GTTCCGCGTACCGCGCTCGATTTTGGAAACAGGTCCGCAGCCTGCGGTGG
CTATTGTTCGAGCAAGTAGTGTCGTCACGGTTCTCTGTGCTATTCTTTCC
TGCGGATTCGGCGCTGACTTCAAGGCTCTGTTGCCTTGGGATCCAAGGGT
TTTCATGTTTAGCATAACTTTTTTGGTTTGGGAAAATAACACATCTATCG
CGCGGTCTGGTGGCCTACTCTACTCTTCTCTAACAGCGCGTTTTCTCTAT
TTTATTTTATTTTTTCTTATTCTTTTTTTAATTTTCCGCTCTTTTTTCCA
TTTTTTATTGTTCTTCCTTCTCTACCCACTTCATCCGTTTCCGCTGCTGA
GCCCCTCTCAGACTACATTCTCCTTCTTATCCTCTTTGTCGAAACAACCA
TGTATCAGGGGGGTTTGGGGAGGGAAGTTCCCTTCGACTTAAAATCTCGA
GGAACAAAGCTATCGTTTTTTATATACTCCAGGGTTGTGCTTCGAATTCC
GAACTTTCTACTACGGATCGAGTACCCCAGAGCAACCCAACGAAAGGGAT
GGGGGGAACTATTTTCAATATTCGTCCCTTCCCGGGGATTTAATCTACAT
ATCCCCGTACGTAGTACTTCAGAAAGGGATCGATACGTTTTTACCCCTGC
AAGGATTCATTTTTTACCTGGCCTTTTCCCGAACCATACTCGCGTTGAGA
AATTCCTATTGTTGGATGGGTCTTCGTTACCCTGAACTGTCTCTAGTAGA
TATTGTGATTACTTTACACTGTGGTTTAACAGTATATATTAACCCTTGTG
GAACTGAATTTCAAGTTTTATCATGAATTTAGTGTGTAAGAAAACATATA
TCGAAGTTCCATAGGGGTTAAATAAGCCCGGCTCGCGCTTTCTGTGGTTT
CCAGGTTATGGAGGCGGTAGCGACGGCGCGGGTTCGCTTCCTCGAGGCGG
GATCCGGGGACAGCGAGGGTGGCAGAAGCATGGGCGATGCCTCGCTATCC
CCTCACGAAAAGCTGGCTGCGCTCTGCCTCACTCTTCTCCAGAGAGACTG
GAGCGGGGGAGATATTAAGTGAGTTTCGGTTTTCCGTGTAGCTTGATGAC
TTTTTTCAGTGGGGTTAGGGGATGGTGGGGCAGAGTTTTTTGGGTGTAGG
GGACAAGGGACGAGAGTGTTAATATATATAGGGATAGAGGGGGGTTTGAC
ATACCTTTCGCTCTGTTCGGGGGAAGGGGGGCAGCGTCAAAACAGCCCCC
CACACGAAAGGACATATTTTATACATCCGCTGGTTGGATGAATGAATAAT
GTTCGGGATTGGAGAAGTTGAGGAGCCCCATTTCCTTAATCTGCGCACAA
TACGGTGTTGCTGAAGCATTCCTTTTTCGAGGCGATTTTGGCTGTGACGC
TCGAATTTCGTGATGATGCGTGGCTCCAAGCGCGACAACGATAATAATAA
TGATAAACGAGACGTTTCTTAAAACATTTTTTTGCTTCTCAATTTTCGTT
CTTTCGTATAAGAATAATAGAAATAATAATAGTTATCTCGACTTTTCTGG
ATTTTTTTTTTCAAAGCTTTTTTCGCCTTTTTTCCTTTCTTATTTTTCGT
CCTTTCGTACATTTTTTTTTTAATAATAATAATAATAAAGCTAGACTTCT
CTAAAAATATTTTGTTTTTTCTTTTCTCGTGTTTCGGTTTTTTCCTTCTC
AATATCGCTGGAATTTCTATTTTGAACGAACGGACGAAAGATTTGTATAC
AAGAGCTCCACGGTGGGGATGCTCGTCAGGACCCACTTGCGCTGGGCAAA
AGATCCCCTTCAGGCACTGGAGGTGAACAGAATGAAAAAAACGTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig65915:72..2970-

>mRNA_H-elongata_contig65915.14176.1 ID=mRNA_H-elongata_contig65915.14176.1|Name=mRNA_H-elongata_contig65915.14176.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig65915:72..2970- (Himanthalia elongata Himel1 dioecious)
ATGGAACTCCCTGTTGTGTTCCTCCTCAAGGTTCTGAACATCTTATGCGG
TTCTGACGAACTGCTCAGCTCCTCTACGGGGCGCGATCTCCTTTGCCGAT
GCCTCGCAGACGCCTTCGAAGATGGAACTCCCTGTTGTGTTCCTCCTCAA
GGTTCTGAACATCTTATGCGGTTCTGACGAACTGCTCAGCTCCTCTACGG
GGCGCGATCTCCTTTGCCGATGCCTCGCAGACGCCTTCGAAGACGTACCG
TTGTCCGAGACAGAGCATTCAGATAGAAGGAAGGCAGGAAGGGGAGAGTC
TTCGTTCGAGTGGTGCTTCGACAGGCTAGAAGACTTCGCGTCCACGGTGC
AGGAACTCCCGCTGGCGGTGCTGCTCGTGCAGACGTACCGTTGTCCGAGA
CAGAGCATTCAGATAGAAGGAAGGCAGGAAGGGGAGAGTCTTCGTTCGAG
TGGTGCTTCGACAGGCTAGAAGACTTCGCGTCCACGGTGCAGGAACTCCC
GCTGGCGGTGCTGCTCGTGCAGGTTATGGAGGCGGTAGCGACGGCGCGGG
TTCGCTTCCTCGAGGCGGGATCCGGGGACAGCGAGGGTGGCAGAAGCATG
GGCGATGCCTCGCTATCCCCTCACGAAAAGCTGGCTGCGCTCTGCCTCAC
TCTTCTCCAGAGAGACTGGAGCGGGGGAGATATTAAGTTATGGAGGCGGT
AGCGACGGCGCGGGTTCGCTTCCTCGAGGCGGGATCCGGGGACAGCGAGG
GTGGCAGAAGCATGGGCGATGCCTCGCTATCCCCTCACGAAAAGCTGGCT
GCGCTCTGCCTCACTCTTCTCCAGAGAGACTGGAGCGGGGGAGATATTAA
ATTTGTATACAAGAGCTCCACGGTGGGGATGCTCGTCAGGACCCACTTGC
GCTGGGCAAAAGATCCCCTTCAGGCACTGGAGGTGAACAGAATGAAAAAA
ACGTCCTGAATTTGTATACAAGAGCTCCACGGTGGGGATGCTCGTCAGGA
CCCACTTGCGCTGGGCAAAAGATCCCCTTCAGGCACTGGAGGTGAACAGA
ATGAAAAAAACGTCCTGA
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