mRNA_H-elongata_contig65895.14173.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.630e-32 Identity = 63/126 (50.00%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C I GIQ ICCS SCG CGG GC SR GG + CC G + A CS APC+ + E C G+ G+QQ DVCCS +CG+CGG GC+ R GG+ +CC G + SG CS APCVV
Sbjct: 145 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 267
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 124 bits (312), Expect = 2.760e-30 Identity = 66/142 (46.48%), Postives = 80/142 (56.34%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVVDEE*GGPT*STEESHP 444
C I GIQ ICCS CG CGG GC SR GG + CC G + A CS APC+ + E C G+ G+QQ DVCCS +CG+CGG GC+ R GG+ +CC G + SG CS APCVV GP + E + P
Sbjct: 106 CDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVT----GPAFTPEPTVP 240
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 124 bits (310), Expect = 8.170e-30 Identity = 60/126 (47.62%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C DI GIQS +CCS SCG CGG GC R GG + CC G + A CS APC+ P+ C + G+Q DVCCS +CG+CGG GC+ R GG+ SCC G + SG CS APC+
Sbjct: 2 CDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTVPM-----CDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMT 122
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.720e-29 Identity = 62/140 (44.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C I GIQS +CCS SCG CGG GC R GG + CC G + A CS APC+ P +E C G+ G+Q DVCCS +CG+CGG GCS R GG+ SCC G + SG CS APC+
Sbjct: 239 CDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRGSGRYCSVTGEAPCMT 378
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 121 bits (303), Expect = 4.110e-29 Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C I GIQ++ +CCS SCG CGG GC R GG CC G + A LC+ APC+ P +E C G+ G+Q +VCCS +CG+CGG GCS R GG+ +CC G ++ SG LC+ APC+
Sbjct: 235 CDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCIT 374
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE) HSP 1 Score: 119 bits (297), Expect = 7.180e-29 Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVVDEE*GGPT*STE 432
C I GIQ+ +CCS SCG CGG GC R GG CC G + A CS APC+ P +E C + G+Q DVCCS +CG+CGG GCS R GG+ +CC G + SG CS APC+ GP +TE
Sbjct: 180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMT-----GPAPTTE 326
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 119 bits (297), Expect = 5.230e-28 Identity = 62/140 (44.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPII--------------EASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C I GIQS +CC+ SCG CGG GC R GG CC G + A CS APC+ P E C G+ G+Q DVCCS +CG+CGG GC+ R GGA +CC G + SG CS APCVV
Sbjct: 136 CDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGADACCGGGVRASGRDCSVTGEAPCVV 275
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 118 bits (296), Expect = 5.510e-28 Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 1
Query: 19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
C I GIQ+ +CCS SCG CGG GC R GG CC G + A CS APC+ P+ C G+ G+Q DVCCS +CG+C G GCS R GG+ +CC G + SG CS APC+
Sbjct: 46 CDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMTVPM-----CDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGACCGGGVQASGRYCSVTGEAPCMT 166
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.680e-27 Identity = 70/134 (52.24%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 16 TCGNDIPGIQSEG--ICCSDSCGECGGKGCGSRPG-GPQKCCLGYIAAMNVLCSEINAAPCVIDPI-IEASTCSNGLAGVQQGDVCCSETC-GTCGGKGCSRRWG--GASSCCVGTISKSGVLCSELEAAPCVV 396
TC N I GI+ ICC +CG CGG GCG+ G CC IA +N LCS N APCV+DP ASTC NGLAGVQ G VCC+E C G CGG+GC G GA CC TI +GV C E APC++
Sbjct: 176 TCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIM 309
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 106 bits (265), Expect = 8.240e-24 Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 1
Query: 16 TCGNDIPGIQSEGICCSDSCGECGGKGCGSRPG--GPQKCCLGYIAAMN--VLCSEINAAPCV--------IDPIIEA-------STCSNGLAGVQQGDVCCSETCGTCGGKGCSR--RWGGASSCCVGTISKSGVLCSELEAAPCVVD 399
TC N IPG+ +CC ++CG+CGG+GCG+ G G CC I + V C E APCV ++P + STCSNG+AG Q G +CC E CG CGG GC GG+ +CC TI +GV+C E APC+++
Sbjct: 291 TCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGE---APCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE---APCIIE 433 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65895.14173.1 >prot_H-elongata_contig65895.14173.1 ID=prot_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp MNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCback to top mRNA from alignment at H-elongata_contig65895:2454..3250- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65895.14173.1 ID=mRNA_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig65895:2454..3250- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65895:2454..3250- >mRNA_H-elongata_contig65895.14173.1 ID=mRNA_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig65895:2454..3250- (Himanthalia elongata Himel1 dioecious)back to top |