mRNA_H-elongata_contig65867.14171.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65867.14171.1
Unique NamemRNA_H-elongata_contig65867.14171.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.000e-46
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 1
Query:   49 MFISLTIHFIDGPTLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFLGLTMVKGS 360
            MFIS TIHF+DG TLR+IDLAC+PFNVTH+G NIA+ELK+I+ D GLDPKKC GITMDNASNMI+AG  L   +DNNI+ LSCFCHS+QL++QRFLGL  VKGS
Sbjct:    1 MFISFTIHFVDGETLRTIDLACRPFNVTHSGENIAKELKSILTDAGLDPKKCTGITMDNASNMIRAGNQLDASDDNNILRLSCFCHSIQLSIQRFLGLQKVKGS 104          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: UPI00143D5482 (zinc finger BED domain-containing protein 1-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D5482)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-12
Identity = 37/116 (31.90%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   16 STDIWTGN-NRKMFISLTIHFIDGPTLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFL-GLTMVKG 357
            +TD+WT   N ++F+ +T+HF+DG  + ++ L C  F  +HT  NI E+++    D+G+   + + I  DNASN++KA +   E E +    + C    + L  Q  + G+T + G
Sbjct:   91 TTDLWTDTLNTRIFLGITVHFLDGSKMATVILGCYEFPKSHTSANITEKIQEACADRGIRKDQLSAIVTDNASNVVKAVKDFLEVEGH----IGCAARKINLIAQNSIEGVTGLPG 202          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: A0A1X7VJT8_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VJT8_AMPQE)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-12
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    1 KFFGGSTDIWTGNNRKMFISLTIHFIDGP-TLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFLGLTMV 351
            K F  +TDIWT      +  +TIHFID    L    L  K F  +HT +NIA EL +I+ +  L  +  A IT DN  N+   G I     D + + + CF H+LQL VQ+ L L  V
Sbjct:   47 KSFSLTTDIWTSRANHAYTGVTIHFIDNDFKLHHFLLETKEFPESHTSLNIANELTSILKEWNLGAENVAAITTDNGRNI--TGAI----RDLDWINIPCFSHTLQLGVQKVLKLPQV 158          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: UPI000B931CE9 (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B931CE9)

HSP 1 Score: 69.7 bits (169), Expect = 2.980e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   16 STDIWTGNNRKMFISLTIHFIDGPT-LRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFL 336
            +TD WT N    F++ T HF DG T L+S  L C  F+  HTG NI  +L TI+ +  +  K  A I  DNA+N+  A       +  N   +SCF H+L LAVQ  L
Sbjct:   43 TTDCWTSNKNTSFMATTAHFFDGNTELKSFCLDCTEFSERHTGDNIRAKLMTIVSNWNITHKVTA-IVSDNAANVTNA------IQKTNYRQVSCFAHTLNLAVQNDL 143          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: UPI0010548952 (zinc finger BED domain-containing protein 1-like n=2 Tax=Gouania willdenowi TaxID=441366 RepID=UPI0010548952)

HSP 1 Score: 71.2 bits (173), Expect = 5.560e-12
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    4 FFGGSTDIWTGNNRKMFISLTIHFIDGPTLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQ 327
            F+  +TD+W+    + ++SLT+HFID  TLRS+ L    F   H G  IA  LK  +    LD K+   +T D+ +N+IKA  +      N    L CF H L  A++
Sbjct:   56 FYSATTDLWSSRTMQPYMSLTVHFIDNWTLRSVCLQTAYFPEDHKGETIAHGLKDALSSWNLDEKRLTCMTTDSGTNIIKALRV------NEWPNLQCFGHKLHNAIE 157          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: A0A1X7TEC0_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TEC0_AMPQE)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-11
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    1 KFFGGSTDIWTGNNRKMFISLTIHFIDGPTLRSIDLACKP---FNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFLGLTMVK 354
            K++   TD+WT  + + +I+LT+H+IDG    S++L C         HTG NIA+ +  ++ +  LD K     T D+ +N+I A   L      +++ +SCF H+L LAV++ L   M++
Sbjct:  197 KYYAIMTDLWTSGSCEPYITLTVHYIDGEW--SLELKCLDTVALFANHTGDNIADCVTDVLSNWELDIKNAVAATTDSGANVIAAFRTL------DLLRISCFGHTLDLAVKKGLSSPMIQ 309          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: A0A8H3MAX6_9GLOM (Zinc finger BED domain-containing protein RICESLEEPER 2-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3MAX6_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 2.360e-10
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    7 FGGSTDIWTGN-NRKMFISLTIHFIDGP-TLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLS-----CFCHSLQLAVQRFL 336
            F  + DIWT + N+ +F+ LTIH+ID    L +  L   PF ++HTG+NI++E+  ++ + G+  K  A +T DN S M+  G  +A   +++ +TL+     C  H L L V++ L
Sbjct:  173 FSLTADIWTSSVNQDVFLGLTIHYIDSNWRLCNFLLDIIPFTISHTGINISQEITRVLEEFGISNKIIA-LTTDNESAMLVCGREMASAFEDDFLTLTFSHYRCAAHVLNLGVKKGL 288          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: UPI00077B9B39 (zinc finger BED domain-containing protein 1-like n=1 Tax=Tetranychus urticae TaxID=32264 RepID=UPI00077B9B39)

HSP 1 Score: 66.6 bits (161), Expect = 2.360e-10
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 KFFGGSTDIWTGN-NRKMFISLTIHFIDGPTLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAV 324
            + F  ++DIWT   N + +I LT+H++DG   +SI +  + F+ +HT +NIA+ + +I+ D  +  +K    T D+ASNMI A   L+      I  + C  H + L V
Sbjct:  148 EMFSLTSDIWTDQMNSRSYIGLTLHYLDGYEQKSICIGARNFDESHTAINIADIITSILSDYDIPMEKVISFTTDSASNMIAAVNHLS------IPHVKCVAHRINLLV 250          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: UPI000DC13964 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13964)

HSP 1 Score: 66.2 bits (160), Expect = 3.260e-10
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   16 STDIWTGNNRKMFISLTIHFIDGPT-LRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCFCHSLQLAVQRFL 336
            +TD WT N    F++ T HF D  T L+S  L C  F+  HTG NI  +L TI+ +  +  K  A I  DNA+N+  A       +  N   +SCF H+L LAVQ  L
Sbjct:  206 TTDCWTSNENTSFMATTAHFFDVNTELKSFCLDCTEFSERHTGDNIRAKLMTIVSNWNITHKVTA-IVSDNAANVTNA------IQKTNYRQVSCFAHTLNLAVQNGL 306          
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Match: A0A2Z6QTF6_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QTF6_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 4.440e-10
Identity = 42/123 (34.15%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    7 FGGSTDIWTGN-NRKMFISLTIHFIDGP-TLRSIDLACKPFNVTHTGVNIAEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLS-----CFCHSLQLAVQRFLGLTMVK 354
            F  + DIWT + N+ +F+ LTIH+ID    L +  L   PF ++HTG+NI++E+  ++ + G+  K  A +T DN S M+  G  +A   +++ +TL+     C  H L L + + L   M+K
Sbjct:  197 FSLTADIWTSSVNQDVFLGLTIHYIDSNWRLCNFLLDIIPFTISHTGINISQEITRVLEEFGISNKIIA-LTTDNESAMLVCGREMASAFEDDFLTLTFSHYRCAAHILNLGILK-LAFYMLK 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65867.14171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.000e-4674.04Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI00143D54821.150e-1231.90zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7VJT8_AMPQE1.540e-1238.98Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI000B931CE92.980e-1240.74zinc finger BED domain-containing protein 1-like n... [more]
UPI00105489525.560e-1236.11zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7TEC0_AMPQE3.330e-1133.06BED-type domain-containing protein n=1 Tax=Amphime... [more]
A0A8H3MAX6_9GLOM2.360e-1035.04Zinc finger BED domain-containing protein RICESLEE... [more]
UPI00077B9B392.360e-1033.94zinc finger BED domain-containing protein 1-like n... [more]
UPI000DC139643.260e-1039.81zinc finger BED domain-containing protein 1-like n... [more]
A0A2Z6QTF6_9GLOM4.440e-1034.15Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65867contigH-elongata_contig65867:1712..2077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.7
Seed ortholog evalue1e-12
Seed eggNOG ortholog7955.ENSDARP00000061379
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs39RW9@33154,3BH13@33208,3D40F@33213,48425@7711,4931H@7742,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.9262428-CDS-H-elongata_contig65867:1711..20771622931045.9262428-CDS-H-elongata_contig65867:1711..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65867 1712..2077 -
1691679675.6374164-CDS-H-elongata_contig65867:1711..20771691679675.6374164-CDS-H-elongata_contig65867:1711..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65867 1712..2077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65867.14171.1prot_H-elongata_contig65867.14171.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65867 1712..2077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65867.14171.1

>prot_H-elongata_contig65867.14171.1 ID=prot_H-elongata_contig65867.14171.1|Name=mRNA_H-elongata_contig65867.14171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
KFFGGSTDIWTGNNRKMFISLTIHFIDGPTLRSIDLACKPFNVTHTGVNI
AEELKTIMIDKGLDPKKCAGITMDNASNMIKAGEILAEDEDNNIVTLSCF
CHSLQLAVQRFLGLTMVKGSP*
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mRNA from alignment at H-elongata_contig65867:1712..2077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65867.14171.1 ID=mRNA_H-elongata_contig65867.14171.1|Name=mRNA_H-elongata_contig65867.14171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig65867:1712..2077- (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCGGTGGCTCCACGGATATTTGGACGGGCAACAACAGGAAAAT GTTCATCTCGCTTACCATCCACTTTATTGACGGCCCCACCCTACGATCGA TCGATCTCGCGTGCAAGCCGTTTAACGTGACACACACGGGAGTAAACATC GCGGAAGAGCTCAAGACCATCATGATCGACAAGGGTCTTGACCCGAAGAA GTGCGCCGGCATCACCATGGACAACGCGTCCAACATGATTAAAGCTGGGG AGATTCTCGCCGAAGACGAAGACAACAACATCGTCACGTTGTCTTGCTTC TGCCACTCTCTCCAGCTCGCAGTCCAGCGCTTCCTGGGTTTAACGATGGT GAAGGGCAGCCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig65867:1712..2077-

>mRNA_H-elongata_contig65867.14171.1 ID=mRNA_H-elongata_contig65867.14171.1|Name=mRNA_H-elongata_contig65867.14171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig65867:1712..2077- (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCGGTGGCTCCACGGATATTTGGACGGGCAACAACAGGAAAAT
GTTCATCTCGCTTACCATCCACTTTATTGACGGCCCCACCCTACGATCGA
TCGATCTCGCGTGCAAGCCGTTTAACGTGACACACACGGGAGTAAACATC
GCGGAAGAGCTCAAGACCATCATGATCGACAAGGGTCTTGACCCGAAGAA
GTGCGCCGGCATCACCATGGACAACGCGTCCAACATGATTAAAGCTGGGG
AGATTCTCGCCGAAGACGAAGACAACAACATCGTCACGTTGTCTTGCTTC
TGCCACTCTCTCCAGCTCGCAGTCCAGCGCTTCCTGGGTTTAACGATGGT
GAAGGGCAGCCCCTAAAAGTTCTTCGGTGGCTCCACGGATATTTGGACGG
GCAACAACAGGAAAATGTTCATCTCGCTTACCATCCACTTTATTGACGGC
CCCACCCTACGATCGATCGATCTCGCGTGCAAGCCGTTTAACGTGACACA
CACGGGAGTAAACATCGCGGAAGAGCTCAAGACCATCATGATCGACAAGG
GTCTTGACCCGAAGAAGTGCGCCGGCATCACCATGGACAACGCGTCCAAC
ATGATTAAAGCTGGGGAGATTCTCGCCGAAGACGAAGACAACAACATCGT
CACGTTGTCTTGCTTCTGCCACTCTCTCCAGCTCGCAGTCCAGCGCTTCC
TGGGTTTAACGATGGTGAAGGGCAGCCCCTAA
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