mRNA_H-elongata_contig65815.14167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65815.14167.1
Unique NamemRNA_H-elongata_contig65815.14167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A6H5JAK3_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAK3_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 1.330e-103
Identity = 143/174 (82.18%), Postives = 160/174 (91.95%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAPPLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  GLGTWAWGNK+VWGY+ +MDAELQEAFNLCV EGINWFDTADSYGTG+IVGQAERLLGKF REYPG    R DLQIATKFAPYPYR+GS+SI++ACDETLER+ A+SLG+GQLHWAPPLGWQEEAYW GLA+L+A GR+ EVGLSNYGPKGV+RAHRFLAG++TPLASNQV
Sbjct:   81 SPMGLGTWAWGNKVVWGYEDAMDAELQEAFNLCVTEGINWFDTADSYGTGKIVGQAERLLGKFVREYPGSDKIRGDLQIATKFAPYPYRVGSQSIVKACDETLERVGADSLGVGQLHWAPPLGWQEEAYWTGLAQLKADGRIGEVGLSNYGPKGVARAHRFLAGLDTPLASNQV 254
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A835ZGI2_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGI2_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.450e-66
Identity = 101/153 (66.01%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:   64 MDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAPPLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            MDAELQ AFN C+  GINWFDTADSYGTG++ GQ+E+LLGKF REYPG A  R D+++ATKFAPYP+RIG  S+ +AC ETL+RL+   L + QLHW P LGWQE AY + LA LRA GRVRE+GLSNYGP+G+ R H  LA    PLASNQV
Sbjct:    1 MDAELQAAFNTCIDAGINWFDTADSYGTGKLAGQSEKLLGKFIREYPG-ASKRDDIRVATKFAPYPFRIGEGSMRQACQETLDRLERPVLDVAQLHWPPSLGWQEAAYLRALAGLRAEGRVREIGLSNYGPRGLRRVHAALAAAGAPLASNQV 152
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A0G4GSM4_VITBC (Aldo_ket_red domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSM4_VITBC)

HSP 1 Score: 213 bits (543), Expect = 2.150e-64
Identity = 100/171 (58.48%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:   10 GLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAPPLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            G+GTWAWGNK +W YD + DAELQ AFN CV  G+NWFD+ADSYGTG + G++E LLGKF + Y G  G R D+++ATKFAPYP+R+G  SI++AC ETLERLQ   L + QLHW+PPLGWQE+AY  GLA+    G  R +G+SNYGP  +    R L      LASNQV
Sbjct:  151 GIGTWAWGNKFLWDYDPARDAELQAAFNYCVEHGLNWFDSADSYGTGELAGRSEILLGKFIQSYKG--GPRDDIRVATKFAPYPWRVGRGSIVQACRETLERLQRPCLDVAQLHWSPPLGWQEDAYIDGLADCVDRGMARAIGVSNYGPVKLQGVVRQLKARGLTLASNQV 319
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A0V0HLN1_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HLN1_SOLCH)

HSP 1 Score: 200 bits (508), Expect = 1.870e-62
Identity = 95/180 (52.78%), Postives = 123/180 (68.33%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQVMT 528
            S  G GTWAWGN+L+WGY  SMD+ELQ+ FN  V  GIN FDTADSYGTG++ GQ+E+LLGKF RE+PGD   + D+ IATKFA YP+R+     + AC  +LER++   +G+GQLHW+     PL  QE A W GL  +   G VR VG+SNYGPK + + +++L     PL S QV+T
Sbjct:    7 SPMGFGTWAWGNQLLWGYQDSMDSELQQTFNFAVENGINLFDTADSYGTGKLNGQSEKLLGKFIREFPGDKQVKNDIVIATKFAAYPWRLTPGQFVNACKSSLERMEIEQIGIGQLHWSTANYAPL--QERALWDGLVAMYEKGLVRAVGVSNYGPKQLLKIYKYLDDRGVPLRSAQVLT 184
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A835EYI5_9POAL (Aldo_ket_red domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835EYI5_9POAL)

HSP 1 Score: 206 bits (525), Expect = 2.150e-62
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  G GTWAWGN+L+WGY +SMD+ELQE FNL +R GIN FDTADSYGTG++ GQ+ERLLGKF RE+ G   +  D+ IATKFA YP+R+ S   + AC  +LERLQ + LG+GQLHW+     PL  QE A W GL E+   G VR VG+SNYGPK + + H +LA    PL+S QV
Sbjct:   55 SPMGFGTWAWGNQLLWGYQESMDSELQECFNLALRNGINLFDTADSYGTGKLNGQSERLLGKFIREFEGSIKSPDDVVIATKFAAYPWRLTSGQFVSACKSSLERLQLDQLGIGQLHWSTANYAPL--QERALWDGLVEMYEKGLVRAVGVSNYGPKQLLKIHSYLASKGVPLSSAQV 230
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A2K2D0B4_BRADI (Aldo_ket_red domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2D0B4_BRADI)

HSP 1 Score: 205 bits (521), Expect = 2.890e-62
Identity = 101/178 (56.74%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  G GTWAWGN+L+WGY +SMD+ELQE FNL ++ GIN FDTADSYGTG++ GQ+ERLLGKF RE+ G   +  D+ IATKFA YP+R+ S   + AC  +LERLQ + LG+GQLHW+     PL  QE   W GL E+ A G VR VG+SNYGPK + + H +LA    PL+S QV
Sbjct:   39 SPMGFGTWAWGNQLLWGYQESMDSELQECFNLALKNGINLFDTADSYGTGKLNGQSERLLGKFIREFEGPIKSPDDVVIATKFAAYPWRLTSGQFVNACKSSLERLQIDRLGIGQLHWSTANYAPL--QERVLWDGLVEMYAKGLVRAVGVSNYGPKQLLKIHGYLASRGVPLSSAQV 214
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: I1I5F0_BRADI (Aldo_ket_red domain-containing protein n=14 Tax=Pooideae TaxID=147368 RepID=I1I5F0_BRADI)

HSP 1 Score: 205 bits (521), Expect = 4.570e-62
Identity = 101/178 (56.74%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  G GTWAWGN+L+WGY +SMD+ELQE FNL ++ GIN FDTADSYGTG++ GQ+ERLLGKF RE+ G   +  D+ IATKFA YP+R+ S   + AC  +LERLQ + LG+GQLHW+     PL  QE   W GL E+ A G VR VG+SNYGPK + + H +LA    PL+S QV
Sbjct:   56 SPMGFGTWAWGNQLLWGYQESMDSELQECFNLALKNGINLFDTADSYGTGKLNGQSERLLGKFIREFEGPIKSPDDVVIATKFAAYPWRLTSGQFVNACKSSLERLQIDRLGIGQLHWSTANYAPL--QERVLWDGLVEMYAKGLVRAVGVSNYGPKQLLKIHGYLASRGVPLSSAQV 231
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A452YMJ7_AEGTS (Aldo_ket_red domain-containing protein n=4 Tax=Triticeae TaxID=147389 RepID=A0A452YMJ7_AEGTS)

HSP 1 Score: 202 bits (514), Expect = 2.930e-61
Identity = 101/178 (56.74%), Postives = 125/178 (70.22%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  G GTWAWGN+L+WGY +SMD+ELQE FNL ++ GIN FDTADSYGTG++ GQ+ERLLGKF RE  G   +  D+ IATKFA YP+R+ S   + AC  +LERLQ + LG+GQLHW+     PL  QE A W GL E+   G VR VG+SNYGPK + + H +LA    PL+S QV
Sbjct:   78 SPMGFGTWAWGNQLLWGYQESMDSELQECFNLALKNGINLFDTADSYGTGKLNGQSERLLGKFIRECQGPIKSPDDVIIATKFAAYPWRLTSGQFVNACKSSLERLQIDRLGIGQLHWSTANYAPL--QERALWDGLVEMYDKGLVRAVGVSNYGPKQLLKIHSYLASRGVPLSSAQV 253
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A3L6TQN3_PANMI (Aldo_ket_red domain-containing protein n=3 Tax=Panicum TaxID=4539 RepID=A0A3L6TQN3_PANMI)

HSP 1 Score: 201 bits (510), Expect = 4.310e-61
Identity = 98/175 (56.00%), Postives = 124/175 (70.86%), Query Frame = 1 
Query:   10 GLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            G+GTWAWGN+L+WGY++SMD+ELQE FNL +R GIN FDTADSYGTG++ GQ+ERLLG+F RE+ G   +  D+ IATKFA YP+R+ +   + AC  +LERLQ   LG+GQLHW+     PL  QE   W GL E+   G VR VG+SNYGPK + + H +LA    PL S QV
Sbjct:    2 GIGTWAWGNQLLWGYEESMDSELQECFNLALRNGINLFDTADSYGTGKLNGQSERLLGRFIREFEGPIKSPDDVVIATKFAAYPWRLSTGQFVGACKSSLERLQLGRLGIGQLHWSTANYAPL--QERVLWDGLVEMYDKGLVRAVGVSNYGPKQLLKIHGYLASKGVPLNSAQV 174
[Close]
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Match: A0A5J5AR49_9ASTE (Aldo_ket_red domain-containing protein n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5AR49_9ASTE)

HSP 1 Score: 202 bits (514), Expect = 4.390e-61
Identity = 98/178 (55.06%), Postives = 122/178 (68.54%), Query Frame = 1 
Query:    1 SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTGRIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACDETLERLQANSLGMGQLHWAP----PLGWQEEAYWKGLAELRATGRVREVGLSNYGPKGVSRAHRFLAGMNTPLASNQV 522
            S  G GTWAWGN+L+WGY +SMD ELQ+ FNL V  GIN FDTADSYGTGR+ GQ+E+LLGKF RE+ G  GAR D+ IATKFA YP+R+     ++AC  +L+R+Q   +G+GQLHW+     PL  QE A W GL  +   G VR VG+SNYGPK + + H +L     PL S QV
Sbjct:   50 SPMGFGTWAWGNQLLWGYQQSMDCELQQTFNLAVENGINLFDTADSYGTGRLNGQSEKLLGKFIREFQGQKGARDDIVIATKFAAYPWRLTPGQFVKACKSSLDRMQIEQIGIGQLHWSTANYAPL--QESALWDGLVAMYEKGLVRGVGVSNYGPKQLVKIHDYLKARGVPLCSAQV 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65815.14167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAK3_9PHAE1.330e-10382.18Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A835ZGI2_9STRA2.450e-6666.01NADP-dependent oxidoreductase domain-containing pr... [more]
A0A0G4GSM4_VITBC2.150e-6458.48Aldo_ket_red domain-containing protein n=2 Tax=Vit... [more]
A0A0V0HLN1_SOLCH1.870e-6252.78Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A835EYI5_9POAL2.150e-6257.30Aldo_ket_red domain-containing protein n=1 Tax=Dig... [more]
A0A2K2D0B4_BRADI2.890e-6256.74Aldo_ket_red domain-containing protein n=1 Tax=Bra... [more]
I1I5F0_BRADI4.570e-6256.74Aldo_ket_red domain-containing protein n=14 Tax=Po... [more]
A0A452YMJ7_AEGTS2.930e-6156.74Aldo_ket_red domain-containing protein n=4 Tax=Tri... [more]
A0A3L6TQN3_PANMI4.310e-6156.00Aldo_ket_red domain-containing protein n=3 Tax=Pan... [more]
A0A5J5AR49_9ASTE4.390e-6155.06Aldo_ket_red domain-containing protein n=3 Tax=Nys... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65815contigH-elongata_contig65815:321..2124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue8.9e-82
Seed eggNOG ortholog2880.D8LL18
KEGG rclassRC00116
KEGG koko:K05275
KEGG ReactionR01708
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004033,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010287,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0036094,GO:0042364,GO:0042651,GO:0042816,GO:0042817,GO:0042819,GO:0042821,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050236,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0070402,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
EC1.1.1.65
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAldo/keto reductase
Ec32 orthologEc-27_000770.1
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65815.14167.1prot_H-elongata_contig65815.14167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65815 321..2124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.6259081-CDS-H-elongata_contig65815:320..5241622931045.6259081-CDS-H-elongata_contig65815:320..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 321..524 -
1691679675.515336-CDS-H-elongata_contig65815:320..5241691679675.515336-CDS-H-elongata_contig65815:320..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 321..524 -
1622931045.6436677-CDS-H-elongata_contig65815:996..11371622931045.6436677-CDS-H-elongata_contig65815:996..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 997..1137 -
1691679675.5283942-CDS-H-elongata_contig65815:996..11371691679675.5283942-CDS-H-elongata_contig65815:996..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 997..1137 -
1622931045.6614687-CDS-H-elongata_contig65815:1511..15541622931045.6614687-CDS-H-elongata_contig65815:1511..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 1512..1554 -
1691679675.5398178-CDS-H-elongata_contig65815:1511..15541691679675.5398178-CDS-H-elongata_contig65815:1511..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 1512..1554 -
1622931045.6804674-CDS-H-elongata_contig65815:1981..21241622931045.6804674-CDS-H-elongata_contig65815:1981..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 1982..2124 -
1691679675.5497062-CDS-H-elongata_contig65815:1981..21241691679675.5497062-CDS-H-elongata_contig65815:1981..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65815 1982..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65815.14167.1

>prot_H-elongata_contig65815.14167.1 ID=prot_H-elongata_contig65815.14167.1|Name=mRNA_H-elongata_contig65815.14167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
SVAGLGTWAWGNKLVWGYDKSMDAELQEAFNLCVREGINWFDTADSYGTG
RIVGQAERLLGKFTREYPGDAGARRDLQIATKFAPYPYRIGSESIIRACD
ETLERLQANSLGMGQLHWAPPLGWQEEAYWKGLAELRATGRVREVGLSNY
GPKGVSRAHRFLAGMNTPLASNQVMT*
back to top

mRNA from alignment at H-elongata_contig65815:321..2124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65815.14167.1 ID=mRNA_H-elongata_contig65815.14167.1|Name=mRNA_H-elongata_contig65815.14167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1804bp|location=Sequence derived from alignment at H-elongata_contig65815:321..2124- (Himanthalia elongata Himel1 dioecious)
TCCGTGGCAGGGCTCGGAACGTGGGCGTGGGGCAACAAGCTTGTATGGGG
CTACGACAAAAGTATGGACGCCGAGCTACAGGAGGCGTTCAATCTGTGCG
TTCGCGAGGGGATCAACTGGTTCGACACGGCAGACAGCTATGGGTGGGGA
CAAGGATTTACAAGCGACGGCTTCGGTAGCCATACGAAGTTTTTTCGGGA
CTTGCGTTGCTTGGCAAAAGGCAGCATATGTAATATATATAGAGAAAGCG
ATAGAGAGAATGCACAGCGGAGTATTTTTAGGTTCGTTTCAGACGTTCGC
GACTGTTACTGTTTCTAAAATATACCGGATGACGAGAGTAAATGGACGCC
TGCGCGCGAAACCTGCTCGCCCGCGAGAGGACATTGCAACGATGCTGAGT
TGCAGTGTTCGGGGACCTTGATCGATTCCGATAGACTGCCGTCATCTCGA
ACTAAGTGGTGGCTTCATTGATCGTAACACACTACCCTCCTTCGCTTTTT
TTTTTCGCCTCTTCCCCTTCTCCACCCGTCCGTGTTCCGTCGGTACCCCC
GGGATCGCGTCACACGACAGAACCGGTAGGATAGTCGGGCAAGCGGAGCG
CCTCTTGGGCAAGGTCAGAGCGCATCGCTCGTCTGTCATCCAGTGCCCCC
CGTGAAGCATGTCCTTCCTCGGTGAACAGGGGTCGCAGCGGCACGTGGTG
CGGAGGTTGCGGCAATTGGAACACCACATCTTATGCGTCGGACGTACCCC
ACCAGATCGTAGCGGCGCGCCGTTTGTTAACGGGTGATACTGTTTAAGCT
CCCCTACCCCCCACCCGTTCCGCCTGGCTAATGTTTCTCCCCTTTATCTT
GGCGCTCTGGAGGGGTCAATCATTGCGATTTGAACGGTGTCTTCAGGACG
GATCATACTTTGACAGCAACGAGGATTTCATCATCTCAACGCGCGCGTCC
GCCTTGTTGCACCTCCCACATTTGATTCTCCTCGCAGTTCACGCGTGAAT
ACCCCGGGGACGCCGGGGCGCGTCGGGATCTCCAAATCGCCACCAAGTTC
GCGCCCTACCCCTATAGAATTGGGAGCGAGTCTATCATCCGGGCGTGCGA
TGAGACGCTCGAGCGCTTGCAGGCTAACGTGAGTGCTGCACTAGACCCTA
GGCCTTTGCCGGGCTGGGGGTTGCCGTGGACCCGCTCCGCGACTCTTCTT
TCCATCTACCGTTGACCTTACAATTTACATCCCCAGGTTTTGAAACAAAC
GCGGAACGAATATAATCTCGCACAAGCGCATTGTTTAGCCGCGTGATCCA
ACTGTTTCGTGTTGTGCTGCTGTGCAAGAACGGGGGGATGCACAAAAGGG
AGAAGACGATCGAAATCGGGGAGGAAGCCCGAAAATTCGTCTTGGTCGGC
CCGAAACGTTCGCACGGTTGACAATTTTGTATCTCGTCACTTACGTCAGT
TGGAGGGAGATCAGGTGATTAGGAACTTGTTTGTCTCCTTCTGGGCCACC
TCGCGTCAGAATCTGCTTTTATTTTTCGTGAAGTACACGTATTACCGACG
CACATTCCCGCCTTTTCTGCTGATACTTATACATGCCGGCAACGCTGCAG
TCTCTAGGTATGGGACAGTTGCATTGGGCCCCGCCGCTCGGATGGCAAGA
GGAAGCCTACTGGAAAGGGCTTGCCGAGTTACGAGCGACAGGCCGCGTAC
GCGAGGTCGGGCTGAGCAACTATGGTCCGAAGGGGGTTTCGAGGGCGCAT
CGCTTCCTCGCCGGTATGAACACGCCGCTGGCCAGCAACCAGGTGATGAC
GTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65815:321..2124-

>mRNA_H-elongata_contig65815.14167.1 ID=mRNA_H-elongata_contig65815.14167.1|Name=mRNA_H-elongata_contig65815.14167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig65815:321..2124- (Himanthalia elongata Himel1 dioecious)
TCCGTGGCAGGGCTCGGAACGTGGGCGTGGGGCAACAAGCTTGTATGGGG
CTACGACAAAAGTATGGACGCCGAGCTACAGGAGGCGTTCAATCTGTGCG
TTCGCGAGGGGATCAACTGGTTCGACACGGCAGACAGCTATGGTCCGTGG
CAGGGCTCGGAACGTGGGCGTGGGGCAACAAGCTTGTATGGGGCTACGAC
AAAAGTATGGACGCCGAGCTACAGGAGGCGTTCAATCTGTGCGTTCGCGA
GGGGATCAACTGGTTCGACACGGCAGACAGCTATGGAACCGGTAGGATAG
TCGGGCAAGCGGAGCGCCTCTTGGGCAAGAACCGGTAGGATAGTCGGGCA
AGCGGAGCGCCTCTTGGGCAAGTTCACGCGTGAATACCCCGGGGACGCCG
GGGCGCGTCGGGATCTCCAAATCGCCACCAAGTTCGCGCCCTACCCCTAT
AGAATTGGGAGCGAGTCTATCATCCGGGCGTGCGATGAGACGCTCGAGCG
CTTGCAGGCTAACTTCACGCGTGAATACCCCGGGGACGCCGGGGCGCGTC
GGGATCTCCAAATCGCCACCAAGTTCGCGCCCTACCCCTATAGAATTGGG
AGCGAGTCTATCATCCGGGCGTGCGATGAGACGCTCGAGCGCTTGCAGGC
TAACTCTCTAGGTATGGGACAGTTGCATTGGGCCCCGCCGCTCGGATGGC
AAGAGGAAGCCTACTGGAAAGGGCTTGCCGAGTTACGAGCGACAGGCCGC
GTACGCGAGGTCGGGCTGAGCAACTATGGTCCGAAGGGGGTTTCGAGGGC
GCATCGCTTCCTCGCCGGTATGAACACGCCGCTGGCCAGCAACCAGGTGA
TGACGTAATCTCTAGGTATGGGACAGTTGCATTGGGCCCCGCCGCTCGGA
TGGCAAGAGGAAGCCTACTGGAAAGGGCTTGCCGAGTTACGAGCGACAGG
CCGCGTACGCGAGGTCGGGCTGAGCAACTATGGTCCGAAGGGGGTTTCGA
GGGCGCATCGCTTCCTCGCCGGTATGAACACGCCGCTGGCCAGCAACCAG
GTGATGACGTAA
back to top