mRNA_H-elongata_contig65784.14162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65784.14162.1
Unique NamemRNA_H-elongata_contig65784.14162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLE     G
Sbjct:  450 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEALVDAG 491
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.750e-13
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLE     G
Sbjct:  548 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEALVDAG 589
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-8
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            KAVL  AR G+LVLMDEMGSGTDP QG ALAQ+LLE     G
Sbjct:  460 KAVLERARPGALVLMDEMGSGTDPAQGVALAQALLEALLDSG 501
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A0G4ECS6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECS6_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            KAVL  A  G+LVLMDEMG+GTDP QGAALAQ+LLE     G
Sbjct:  475 KAVLERAGRGALVLMDEMGTGTDPSQGAALAQALLETLVDSG 516
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A4D9D3J8_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.400e-7
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 VLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            VLS A +G+LVLMDEMGSGTDP QG A+AQ+LLE     G
Sbjct:  509 VLSNAASGALVLMDEMGSGTDPAQGVAIAQALLEALLETG 548
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A6C1NLR0_9BACT (Endonuclease MutS2 n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6C1NLR0_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 8.720e-7
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    7 VLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            +L GA  G+LVLMDEMG+GTDP +GAALA+++LEV    G
Sbjct:  428 ILEGASPGTLVLMDEMGTGTDPSEGAALARAILEVLVERG 467
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A485M4Q8_9ZZZZ (Endonuclease MutS2 n=2 Tax=root TaxID=1 RepID=A0A485M4Q8_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.190e-6
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 VLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            +++GA  GSL+L+DE+G+GTDP +GAALAQS+LE    LG
Sbjct:  406 IVNGAGRGSLILLDELGAGTDPTEGAALAQSILEKLHALG 445
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A651HN39_9BACT (Endonuclease MutS2 n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HN39_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 VLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            +L GA  G+LVLMDEMG+GTDP +GAALA+S+LE     G
Sbjct:  427 ILDGAGPGTLVLMDEMGTGTDPAEGAALARSILETLVERG 466
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A5Q4DEE1_9BACT (Endonuclease MutS2 (Fragment) n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A5Q4DEE1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 VLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLG 126
            +L GA  G+LVLMDEMG+GTDP +GAALA++LLE     G
Sbjct:  187 ILEGAGPGTLVLMDEMGTGTDPAEGAALARALLETLVARG 226
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BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Match: A0A383W1M4_TETOB (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W1M4_TETOB)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-6
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLE 108
            K +L+GA AGSLVL+DE+GSGTDP +GAALA+++L+
Sbjct:  567 KLLLAGAGAGSLVLLDEVGSGTDPQEGAALARAVLD 602
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65784.14162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI6.750e-1388.10MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE6.750e-1388.10DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA3.800e-871.43Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A0G4ECS6_VITBC1.820e-769.05Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9D3J8_9STRA3.400e-767.50Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6C1NLR0_9BACT8.720e-762.50Endonuclease MutS2 n=1 Tax=Gemmatimonadales bacter... [more]
A0A485M4Q8_9ZZZZ1.190e-660.00Endonuclease MutS2 n=2 Tax=root TaxID=1 RepID=A0A4... [more]
A0A651HN39_9BACT1.630e-662.50Endonuclease MutS2 n=1 Tax=Gemmatimonadales bacter... [more]
A0A5Q4DEE1_9BACT1.630e-662.50Endonuclease MutS2 (Fragment) n=1 Tax=Gemmatimonad... [more]
A0A383W1M4_TETOB3.050e-666.67DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65784contigH-elongata_contig65784:945..1076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.200743-CDS-H-elongata_contig65784:944..10761622931045.200743-CDS-H-elongata_contig65784:944..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65784 945..1076 +
1691679675.3850236-CDS-H-elongata_contig65784:944..10761691679675.3850236-CDS-H-elongata_contig65784:944..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65784 945..1076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65784.14162.1prot_H-elongata_contig65784.14162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65784 945..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65784.14162.1

>prot_H-elongata_contig65784.14162.1 ID=prot_H-elongata_contig65784.14162.1|Name=mRNA_H-elongata_contig65784.14162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
KAVLSGARAGSLVLMDEMGSGTDPMQGAALAQSLLEVTTTLGH*
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mRNA from alignment at H-elongata_contig65784:945..1076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65784.14162.1 ID=mRNA_H-elongata_contig65784.14162.1|Name=mRNA_H-elongata_contig65784.14162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig65784:945..1076+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGTGCTCAGCGGGGCGAGAGCGGGGTCGTTGGTTCTCATGGACGA
AATGGGAAGCGGCACGGACCCCATGCAGGGCGCCGCGCTCGCGCAGTCAC
TCCTCGAGGTTACAACAACATTAGGACATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig65784:945..1076+

>mRNA_H-elongata_contig65784.14162.1 ID=mRNA_H-elongata_contig65784.14162.1|Name=mRNA_H-elongata_contig65784.14162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig65784:945..1076+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGTGCTCAGCGGGGCGAGAGCGGGGTCGTTGGTTCTCATGGACGA
AATGGGAAGCGGCACGGACCCCATGCAGGGCGCCGCGCTCGCGCAGTCAC
TCCTCGAGGTTACAACAACATTAGGACATTAGAAGGCGGTGCTCAGCGGG
GCGAGAGCGGGGTCGTTGGTTCTCATGGACGAAATGGGAAGCGGCACGGA
CCCCATGCAGGGCGCCGCGCTCGCGCAGTCACTCCTCGAGGTTACAACAA
CATTAGGACATTAG
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