mRNA_H-elongata_contig65783.14161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65783.14161.1
Unique NamemRNA_H-elongata_contig65783.14161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65783.14161.1 vs. uniprot
Match: A0A6H5L8E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8E6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-7
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:  287 RHSLCPVLLQVQSKIDELTMLDKALYEACAEEFERVIAPQTDQVQSDLVEFYKLQRQMGEYMNTNPTSMANKLYRFTDMVNSYPPP 544
            R   C +  +VQ++IDELT+LD+ALY+A  +EFE+ ++  +   Q++L  F +LQ  +  Y+  N + +A ++YR  D V + PPP
Sbjct:  270 RPDFCHLSEEVQARIDELTILDQALYDAGKKEFEKRLSSTSTSFQAELAGFQELQDNVCTYLEGNSSGLAREMYRSMDAVYTDPPP 355
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BLAST of mRNA_H-elongata_contig65783.14161.1 vs. uniprot
Match: A0A6H5JIK1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.850e-7
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 2 
Query:  314 QVQSKIDELTMLDKALYEACAEEFERVIAPQTDQVQSDLVEFYKLQRQMGEYMNTNPTSMANKLY 508
            QVQ+KID+LT LD+ LYEA  +EFE+ +AP    VQ D+ +F +LQ  + +Y+N N +S+A ++Y
Sbjct:  269 QVQNKIDDLTRLDRVLYEAGKDEFEKRLAPYASSVQEDIPQFQELQGVIKDYLNGNSSSLAYQMY 333
[Close]
BLAST of mRNA_H-elongata_contig65783.14161.1 vs. uniprot
Match: A0A6H5JMW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.020e-7
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 2 
Query:  317 VQSKIDELTMLDKALYEACAEEFERVIAPQTDQVQSDLVEFYKLQRQMGEYMNTNPTSMANKLYRFTDMVNSYPPP 544
            VQ KIDELT LD+ LY+A    FE  +AP T QV +DL  F +LQ  + EY+  NP+S A  LY +   V    PP
Sbjct:  377 VQEKIDELTTLDRRLYDAGVAAFEESLAPFTAQVDADLEGFRELQTVVNEYLRDNPSSPAQALYSYKTAVYYEDPP 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65783.14161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L8E6_9PHAE1.110e-738.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIK1_9PHAE1.850e-747.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW5_9PHAE5.020e-747.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65783contigH-elongata_contig65783:2..2256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-3-O-sulfotransferase
Ec32 orthologEc-09_000360.1
Exons3
Model size1641
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65783.14161.1prot_H-elongata_contig65783.14161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65783 345..1171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.0802445-UTR-H-elongata_contig65783:1..3441622931045.0802445-UTR-H-elongata_contig65783:1..344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65783 2..344 +
1691679675.31528-UTR-H-elongata_contig65783:1..3441691679675.31528-UTR-H-elongata_contig65783:1..344Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65783 2..344 +
1622931045.1489644-UTR-H-elongata_contig65783:1171..22561622931045.1489644-UTR-H-elongata_contig65783:1171..2256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65783 1172..2256 +
1691679675.3747792-UTR-H-elongata_contig65783:1171..22561691679675.3747792-UTR-H-elongata_contig65783:1171..2256Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65783 1172..2256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.0941045-CDS-H-elongata_contig65783:344..3921622931045.0941045-CDS-H-elongata_contig65783:344..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 345..392 +
1691679675.3257613-CDS-H-elongata_contig65783:344..3921691679675.3257613-CDS-H-elongata_contig65783:344..392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 345..392 +
1622931045.1148567-CDS-H-elongata_contig65783:647..7601622931045.1148567-CDS-H-elongata_contig65783:647..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 648..760 +
1691679675.339115-CDS-H-elongata_contig65783:647..7601691679675.339115-CDS-H-elongata_contig65783:647..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 648..760 +
1622931045.131732-CDS-H-elongata_contig65783:1119..11711622931045.131732-CDS-H-elongata_contig65783:1119..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 1120..1171 +
1691679675.361863-CDS-H-elongata_contig65783:1119..11711691679675.361863-CDS-H-elongata_contig65783:1119..1171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65783 1120..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65783.14161.1

>prot_H-elongata_contig65783.14161.1 ID=prot_H-elongata_contig65783.14161.1|Name=mRNA_H-elongata_contig65783.14161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MLDKALYEACAEEFERVIAPQTDQVQSDLVEFYKLQRQMGEYMNTNPTSM
ANKLYRFTDMVNSYPPPYPF*
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mRNA from alignment at H-elongata_contig65783:2..2256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65783.14161.1 ID=mRNA_H-elongata_contig65783.14161.1|Name=mRNA_H-elongata_contig65783.14161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2255bp|location=Sequence derived from alignment at H-elongata_contig65783:2..2256+ (Himanthalia elongata Himel1 dioecious)
TCCTTGAAGGTAAGTCCAGCCTTACTTTGCTAGAAAGACCCCCTTGCCGG
GGCAGCGAGGGGATTACACAATTATGAGTCATAAACCAGGCGAGACGCGA
AAGGTAGTTTCACGACCAGCATAAACATTTTCGAGGCCTTAGATTACCAA
TCCGTGTAAAAAATTAGAATAGGCCACCTGGAGACTGACGACGTATTTTA
AACCAAGGCGGTCTTTGATTACTGATGTACGCTTCTTTGGAACAATCTAA
AGTACCCCGGTAAATATTTTCACGTTCTCAGCCGTGCGTCATTCATTGTG
TCCGGTACTATTGCAGGTCCAAAGCAAAATCGACGAGCTTACTATGCTTG
ACAAGGCATTATATGAAGCCTGCGCGGAGGAGTTTGAAAGGGTACGTGAG
ATGAACATCAAAGGTGGTCACAGCAAAAATTGAACGGGGCTCCCCCCCCC
CCCCCCCCCCCCCTCACGCGATATTCCTTCATTCGCGAACATTTTGTCAA
CAAGATCGCGAGCTAGTCCTGTTGTGTGGTGTGGTGTGAATTCACTCTGT
TTCAGCTTCGACAATATTCTACTGGGGGAAAAGATGCCCTGTAACTTGTC
TAATCCAAAAACGATTACGTTATATTTTCTTTGTTCCTTGTTCCAGGTCA
TTGCACCACAAACTGACCAAGTGCAGTCGGACTTGGTGGAGTTTTACAAG
CTGCAGCGTCAGATGGGGGAATATATGAACACAAACCCAACGAGCATGGC
TAACAAATTGTACGGAGCTAGATAGTGTAACATGGGCATGGGTGTATTAT
CAAAACGTAGAGATTAACGCATGTGTGGTAGCGTGGTAGCTCTAAGAAAG
GTAGGATACCAGCACGGAAGAAACTCATTTCACCTCATGATTCCATTCTT
ACTTCTTGGTGTGCGTCATTTCCTCCTAAATACCGGTATGTTACAATCCC
GTGAAGCATATTTTCACGCTATCCTGGATTTCACCTTTCATTGTTCGAAG
AAGGTTTGGATGTTGGGAGGATTTGAAATAATCCGTACGTATGTTTTAAA
ATAAAACAATATATACCCACATTATTTCCTCCCTTTTCTCCATAATGCCT
ACGGTTGTCACGTCATAGATACAGGTTTACGGACATGGTCAACTCATATC
CGCCACCATACCCGTTCTGATATCGACGTCACTTGGAGGGTGCCAGCTTT
ATCCCTCGTAGAAGCCAAGACCAAGGCCATGCAACATCTTGGAAAACTTG
CGCCAAGATCAGCCGTTCTGTGTAGACTAGGGAATTTGGTTCCCGCAAAA
AAGGGTCGCAAACCTTGGGTCGATGTAGCTGCCCATATGTCACCCGCATG
ACTCGTGAAGTAAAGACACGATTAATATGCTATCGGCATGTTTTCGAAAT
CAGCGCTTGATGCGGTATAAGATTTGTGCCCTCGGCGGAATAGCATTTAT
TTTTGTGTAAATTTGAAATATGTTTTCTTGCCATTTTCGCCATTTCTATG
GTATTTCGTGGAAGCAATACATTGGTCGGAATTTGAAAATAAATTTAGAA
GACATATAAAACTAGATTCTGAAGGAAGAGTATACCGGTATTCGGCTCGA
GTTGAATGAAGAACCTGGTTGCCCTTAGTTTATTATTGACTTACATAGTT
CAGGGGTTCTCTGGGAAAAAATGAAAATTGATAGTATTTGAAGAAAAATT
ATGGCAATTCAAGCCCACAGTAGATATTGGTTAACGGTTTTGTTCTGGTT
GAACACACATTCCATCCTCTGCATTGGAGAGCGTCCCTTGATTCGACGGC
CTAAGAACCTTGCCAGACAAAGATTGCATATAGTACGTCGTATTTTTGGA
TAATCACAGCTATTCAATGTAGTTATTCCTTCAGGCTGGTTACCAAGGTA
TGCGAGCGTGTTTATTTAACGGGAGCATGATTTTGTTGTTTTGTTGCCTA
GAGCTCCTCGACGTGGGCAAGCAAAAGCTCCCAAATTCATCGTGTCCTTG
CTCGATGTAGGGTAGAGTTGAGAGGTCTGATTAAAATAGGAGCCAGACAA
ACCGCCCAACCTATCCGGAAGCCTTTTTTAGTTTTTTATGGACTGTATGA
TTATAACATATACTGGTAGCAGAGTAAGATCAACCGGATTTGGCTGCCTT
CTGCCCGTGGTCAGCTGAACAGAGAAAAACAATTTTACTCTCTCCCCGTT
CGCGCCTAATATTTTGGTCTCGCTAGACAGGTTCAGTAGTCCCGTCCCGC
GTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig65783:2..2256+

>mRNA_H-elongata_contig65783.14161.1 ID=mRNA_H-elongata_contig65783.14161.1|Name=mRNA_H-elongata_contig65783.14161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig65783:2..2256+ (Himanthalia elongata Himel1 dioecious)
ATGCTTGACAAGGCATTATATGAAGCCTGCGCGGAGGAGTTTGAAAGGAT
GCTTGACAAGGCATTATATGAAGCCTGCGCGGAGGAGTTTGAAAGGGTCA
TTGCACCACAAACTGACCAAGTGCAGTCGGACTTGGTGGAGTTTTACAAG
CTGCAGCGTCAGATGGGGGAATATATGAACACAAACCCAACGAGCATGGC
TAACAAATTGTCATTGCACCACAAACTGACCAAGTGCAGTCGGACTTGGT
GGAGTTTTACAAGCTGCAGCGTCAGATGGGGGAATATATGAACACAAACC
CAACGAGCATGGCTAACAAATTATACAGGTTTACGGACATGGTCAACTCA
TATCCGCCACCATACCCGTTCTGAATACAGGTTTACGGACATGGTCAACT
CATATCCGCCACCATACCCGTTCTGA
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