mRNA_H-elongata_contig65782.14160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65782.14160.1
Unique NamemRNA_H-elongata_contig65782.14160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65782.14160.1 vs. uniprot
Match: A0A6H5JSE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSE0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.740e-39
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 ALMAFFQGGLEIFRQQEKGMRRRQVLLDRINRRYDADNALWAYVRSRLEAELMGALPPPGAPPGARAPINPRASCPVYVAELTTEILSADSQE 279
            AL+AFFQGG  I  + EK MRRRQV+LD +N+R+D DNALWAYVRSRLEAEL GALPPPGAPPGARAP+NPRA+CPVYVAELTTE+LSA SQE
Sbjct:  347 ALLAFFQGGGSICGEMEKSMRRRQVVLDGMNKRHDRDNALWAYVRSRLEAELQGALPPPGAPPGARAPVNPRAACPVYVAELTTEVLSAASQE 439
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BLAST of mRNA_H-elongata_contig65782.14160.1 vs. uniprot
Match: A0A7S2GJK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJK9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.410e-6
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   13 FFQGGLEIFRQQEKGMRRRQVLLDRINRRYDADNALWAYVRSRLEAELMGALPPPGAPPGARAPINPR 216
            +F  G  +    +K   + +  L     +Y  +   W  +R+RLEAEL+G+ PPPGAP GA++PI+PR
Sbjct:  108 YFHSGDALISSVQKSTEKTKKALTLALSQYVEEGGAWDRMRNRLEAELLGSQPPPGAPEGAQSPISPR 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65782.14160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSE0_9PHAE1.740e-3979.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2GJK9_9STRA7.410e-638.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65782contigH-elongata_contig65782:51..3154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue3.9e-33
Seed eggNOG ortholog2880.D7FY51
KEGG koko:K12491
KEGG Pathwayko04144,map04144
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0705@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65782.14160.1prot_H-elongata_contig65782.14160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65782 57..3154 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.9992614-UTR-H-elongata_contig65782:50..561622931044.9992614-UTR-H-elongata_contig65782:50..56Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65782 51..56 +
1691679675.282863-UTR-H-elongata_contig65782:50..561691679675.282863-UTR-H-elongata_contig65782:50..56Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65782 51..56 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.0187917-CDS-H-elongata_contig65782:56..1971622931045.0187917-CDS-H-elongata_contig65782:56..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65782 57..197 +
1691679675.2930157-CDS-H-elongata_contig65782:56..1971691679675.2930157-CDS-H-elongata_contig65782:56..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65782 57..197 +
1622931045.0345373-CDS-H-elongata_contig65782:3022..31541622931045.0345373-CDS-H-elongata_contig65782:3022..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65782 3023..3154 +
1691679675.302507-CDS-H-elongata_contig65782:3022..31541691679675.302507-CDS-H-elongata_contig65782:3022..3154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65782 3023..3154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65782.14160.1

>prot_H-elongata_contig65782.14160.1 ID=prot_H-elongata_contig65782.14160.1|Name=mRNA_H-elongata_contig65782.14160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MAFFQGGLEIFRQQEKGMRRRQVLLDRINRRYDADNALWAYVRSRLEAEL
MGALPPPGAPPGARAPINPRASCPVYVAELTTEILSADSQE
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mRNA from alignment at H-elongata_contig65782:51..3154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65782.14160.1 ID=mRNA_H-elongata_contig65782.14160.1|Name=mRNA_H-elongata_contig65782.14160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3104bp|location=Sequence derived from alignment at H-elongata_contig65782:51..3154+ (Himanthalia elongata Himel1 dioecious)
GCCTTGATGGCGTTCTTCCAGGGGGGACTGGAGATTTTCCGGCAGCAGGA
GAAAGGGATGAGAAGACGCCAGGTTCTGTTGGACCGCATAAACCGCCGCT
ACGACGCCGATAACGCTCTCTGGGCCTATGTTCGTTCGCGCCTCGAGGTG
AGTTTGTGTGTTACCATAGCCGGTTAACATTGAACAGAAGCACGACCGTT
CACAAGTCCACGGCTGCACAAGAGGAGAGAAGCACACACGCACTAATAAT
ATATTAACAGCTGTGTTCGCAGTATACACCAACATATTAACAGTAGGGCA
TACAGTACGACTATTGACTATATTGGCAACAAACGCGCGTGATTATTCGC
GTGATTATTTGGTACTTGGTATAAAGAAGTACCTGCCAGGTAGAGTAGAG
TACCCGTTACGTACTACCTCTGGTATCAGAATGTAGTAGAAATAGTTGGG
TGCTTGTTAGCAATAGTTGTAGTCTCAACATTGATTGTAGTAGTAGTAGT
ATATCGCTCTCTAGAGTTTATTATTTATTATTATTATTGATTGAATTCTC
ACATAAGCTGATGTCAAAATCCAGACCGTGGTCACAAGGTAGAAAAAAAC
GCTATCCGGAAGGGAAAAACGCTTAACGTACTCTCCAATACAAAAGGAAA
CGACAATGGTGCATAATATTCGGAAAAAGCGACATCTTCAAAGAATAAGA
AACACAAAAAACAAAACAAAACAAAAACACATAAAAAAGCACCAAAAATA
TACACAAAAAATATACCAAAAAAACGCACAAAAAAGAGAACACAGTTGTT
AACGAATGGCACGTGGCCGTCGGGAGGCGGGCCTATCGAAGAACGATTGA
ACGAAAAGCCACGGGTTCAATGAAAGCACAAAAAAAAACGAAAACGAAAG
AAAAACAAGACAAGAAAAAACCTAACGCCAGAGAAAGGCAATATGACATC
GGGAAGCAAAAAAAACGCCCGGGGGATAAGTTCGCGCCACTTGTAGTTAA
TAAACTATAGCGAGCAAACCAGCACGAGCACGCTTGCTTTGAGTTATCCT
CTCCTTGGTCCTCCCCGTCACGTTCGGACATGCTAGTGCATGCCGTAGTC
CAGTCCTAACTTTCTCTGGAGCGATCCATTTTGTCATGAAACGTTCCGCC
CCTTGTTCCGCCATCTTACGCCATCTCCCCTCGTCCTGGGCTGCAATCGT
CCACTGGTCGGCGTTGATATCGAAAGTTTTGAGGTCTTCCAAAAGATACC
CCATCCACTCTTTTTCCTGCACCCCCACGCAGCCCGCGCCTTCCATGACT
TCTCCGAACATCACGCACTTCGGCAGTCTCGTATCGTCCATGCGTACCAC
AAATCCCGCGAACAGGATTTGCCTCCTGTACATGATCGTCTCGATGCTCT
CACTTCCCGTCTTCATTAGGGTGTCCAGATAGGAGATCGGGTGATCGGTG
CGCTTGTTCTTTCGCCAATCGATGCAGCGAGTCAAGAAGCTGTGGTGGGC
TTGGCGCAGCGTGTCGTAGTACCACGCGCGCGGGCTCCACGTGACCAGCC
GTACAGCATTGTCTCGATTACCTTGGCTTTCAGCATCCAGATTTTGAGCT
CGAGGGGGGTGCTGAGTCGGTCGTACGGTTCTCGGGGGGGGGTGTACTTC
CGGAAGCTGCACCATGCGTTGCGTATGCGCCGGTTGACCTCGATGGACAG
GTCAGCGTTGTGGTTGACGTCCCCCCGGAGGTATACGAACTCCTTTGTTT
GGTTGTACACGTGACCGGCTGCTTCTATGCTGAATGTCGCGGTGGCCTCT
GACATCCCCTTCGTGCGTAAACACATGATCTCAGTTTTGGCCTCCGATAC
GGTGAGACCCAATGCCGCGCATATGACCACGATCACTCCTATCATCTTCC
TGAGCTGCTCGGGCGATTGCGAGCCGACTCGGGCATATAGCATACTCCAC
AGCGACATCGCCAAGGATGACTCTCTGGTGGTTGCTATCCCCCGTCTCCT
CGCCCTCGTTTTGTTCATGAGGTGCACCAGGGCGTCTATGATGTCTTTGT
TTACCTTGAAACGCGTGTAGGCCACGTTTTGAGTAGAAGGGGCTTGAGCA
CGGATACTCGACGAAGGTGTTGTTCCACAGCGAACCACCCCGAGTAAACC
CGGTCATCGAGCCGCACACATGCTCGCATGCCATCATGGAATTGACGAAT
GACCGAGATTATCTGTTGTGGCACGCCGAAACGGGCGAGTACTGTCCAGA
GGAGGGTTCGGTCAGCGAAGTCGTACGCTTTTGTAAGATCGGTAGGGCAT
GCATACAACGGAGTCCGTTTCTTCCGCGCCAACTCCTGTAGTCGACAAAT
CACGAGCATCATATCGGTGGTAAAAAGGTTCGGTCGGAAACCTATATATA
TATATATATATTGTTGACTCAGTTGTGTGTCACCGTTGTTCTTCAGTTGG
TATTTGCAAGGATTTAAAAAGAAGAAAAAAGCATGTCTCGAATAATTTAT
TTTAAAGATTGCAATTTATTAAAAAATAATAATAATAATTCATATTTCTA
CCAATGTTTTGTTGGGGGGTTCGAAATATGTCAAGCAGCAGGGGTGTAAA
TGTAAATATCCCTAGATTTTGTTACCACGATGAAAAAAAAAAATGATATT
AGGGAAGGAGAGCTTGTTATACAGAGAAAAAAAACGCCTCTTCGCCCTAA
GTGGTATTATATTACAGTGTATTGGTATATTCTCGGGAGGTGCGTAGACG
CCGTTATTATAGGAGACCTTTATAAAAAGTAATCGTGGTAAAATAAAAAC
CAAAAAATAAATAAAATGCCCTCCTTAATTAATCATTTTGTGCCATAATT
ATACATTTATATATATATAATACATGTTTTAGGAGGTTTTGTTTACATTG
AAGGTGATTAAAAAAACAGTTAACCAACCAATCAACGTCACAGCGCGCTC
GGACGACACCACCCCATCGCAGGCGGAGTTGATGGGCGCGTTACCGCCTC
CCGGAGCACCTCCCGGAGCACGAGCGCCGATCAACCCTCGTGCTTCCTGC
CCCGTGTACGTGGCCGAGCTGACGACGGAGATACTGTCTGCTGACAGCCA
GGAG
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Coding sequence (CDS) from alignment at H-elongata_contig65782:51..3154+

>mRNA_H-elongata_contig65782.14160.1 ID=mRNA_H-elongata_contig65782.14160.1|Name=mRNA_H-elongata_contig65782.14160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig65782:51..3154+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTCTTCCAGGGGGGACTGGAGATTTTCCGGCAGCAGGAGAAAGG
GATGAGAAGACGCCAGGTTCTGTTGGACCGCATAAACCGCCGCTACGACG
CCGATAACGCTCTCTGGGCCTATGTTCGTTCGCGCCTCGAGATGGCGTTC
TTCCAGGGGGGACTGGAGATTTTCCGGCAGCAGGAGAAAGGGATGAGAAG
ACGCCAGGTTCTGTTGGACCGCATAAACCGCCGCTACGACGCCGATAACG
CTCTCTGGGCCTATGTTCGTTCGCGCCTCGAGGCGGAGTTGATGGGCGCG
TTACCGCCTCCCGGAGCACCTCCCGGAGCACGAGCGCCGATCAACCCTCG
TGCTTCCTGCCCCGTGTACGTGGCCGAGCTGACGACGGAGATACTGTCTG
CTGACAGCCAGGAGGCGGAGTTGATGGGCGCGTTACCGCCTCCCGGAGCA
CCTCCCGGAGCACGAGCGCCGATCAACCCTCGTGCTTCCTGCCCCGTGTA
CGTGGCCGAGCTGACGACGGAGATACTGTCTGCTGACAGCCAGGAG
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