mRNA_H-elongata_contig65665.14148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65665.14148.1
Unique NamemRNA_H-elongata_contig65665.14148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5JD26_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD26_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.460e-19
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++CM+D RLPK  + G + GG G  GGQ+ +W+  L +DL +F +  ++    W  +A+D   W   VE GA
Sbjct:  758 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVICMEDNRLPKRTLLGVMAGGVGYRGGQESDWVSRLGEDLVVFNMGDEKEGGKWKQSAKDSEVWNNEVEDGA 864
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.610e-19
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  145 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 251
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5JYP4_9PHAE (Myb_DNA-bind_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.500e-19
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++CM+D+RLPK ++ G + GG G  GGQ+ +W+  L +DL  F +  ++    W  + +D   W   VE GA
Sbjct:  145 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMCMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKKSVKDPEVWYNKVEDGA 251
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.990e-19
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  175 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 281
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.410e-18
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGIN----ADQWTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D+RLPK ++ G + GG G  GGQ+ +W+  L +DL  F +      D+W  +A+D   W   VE+GA
Sbjct:  284 RSDRPLSYAHALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGA 390
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.830e-18
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  265 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 371
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-18
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINAD----QWTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ GE+ GG    GGQ+  W+  + +DL  F +  +    +W  +A+D   W   VE GA
Sbjct:   88 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.170e-18
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  354 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 460
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.330e-18
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  444 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 550
[Close]
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.360e-18
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 RTDDPISYLDTLMKTG-SENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFGEIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQ----WTIAAQDEGEWRKTVEQGA 306
            R+D P+SY   L++ G  E IEA +R+RR+ FAGF++ M+D RLPK ++ G + GG G  GGQ+ +W+  L +DL  FG+  ++    W  +A+D+  W   +E GA
Sbjct:  509 RSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGA 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65665.14148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD26_9PHAE1.460e-1942.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSH7_9PHAE7.610e-1941.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYP4_9PHAE9.500e-1941.12Myb_DNA-bind_7 domain-containing protein n=1 Tax=E... [more]
A0A6H5KB07_9PHAE9.990e-1941.12Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LG55_9PHAE1.410e-1842.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5T8_9PHAE1.830e-1841.12Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6M5_9PHAE1.900e-1840.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD24_9PHAE2.170e-1841.12Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JF72_9PHAE2.330e-1841.12Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE2.360e-1841.12Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65665contigH-elongata_contig65665:3075..3380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.7
Seed ortholog evalue2.8e-11
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.5001462-CDS-H-elongata_contig65665:3074..33801622931043.5001462-CDS-H-elongata_contig65665:3074..3380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65665 3075..3380 +
1691679674.587901-CDS-H-elongata_contig65665:3074..33801691679674.587901-CDS-H-elongata_contig65665:3074..3380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65665 3075..3380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65665.14148.1prot_H-elongata_contig65665.14148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65665 3075..3380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65665.14148.1

>prot_H-elongata_contig65665.14148.1 ID=prot_H-elongata_contig65665.14148.1|Name=mRNA_H-elongata_contig65665.14148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RTDDPISYLDTLMKTGSENIEAIMRRRRILFAGFLVCMDDTRLPKCLMFG
EIMGGAGRVGGQKKEWMGYLLKDLKMFGINADQWTIAAQDEGEWRKTVEQ
GA
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mRNA from alignment at H-elongata_contig65665:3075..3380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65665.14148.1 ID=mRNA_H-elongata_contig65665.14148.1|Name=mRNA_H-elongata_contig65665.14148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig65665:3075..3380+ (Himanthalia elongata Himel1 dioecious)
CGCACCGATGACCCGATCTCCTATCTGGACACCCTAATGAAGACGGGAAG
CGAGAACATTGAGGCGATCATGCGCAGGAGGCGGATCCTGTTCGCCGGAT
TCCTGGTATGTATGGACGACACGAGACTGCCGAAGTGCCTAATGTTCGGA
GAAATCATGGGAGGCGCGGGTCGCGTGGGAGGGCAGAAAAAAGAGTGGAT
GGGATATCTTCTGAAAGACCTCAAAATGTTCGGTATCAACGCCGACCAGT
GGACAATCGCAGCCCAGGACGAGGGGGAGTGGCGCAAGACGGTGGAACAA
GGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig65665:3075..3380+

>mRNA_H-elongata_contig65665.14148.1 ID=mRNA_H-elongata_contig65665.14148.1|Name=mRNA_H-elongata_contig65665.14148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig65665:3075..3380+ (Himanthalia elongata Himel1 dioecious)
CGCACCGATGACCCGATCTCCTATCTGGACACCCTAATGAAGACGGGAAG
CGAGAACATTGAGGCGATCATGCGCAGGAGGCGGATCCTGTTCGCCGGAT
TCCTGGTATGTATGGACGACACGAGACTGCCGAAGTGCCTAATGTTCGGA
GAAATCATGGGAGGCGCGGGTCGCGTGGGAGGGCAGAAAAAAGAGTGGAT
GGGATATCTTCTGAAAGACCTCAAAATGTTCGGTATCAACGCCGACCAGT
GGACAATCGCAGCCCAGGACGAGGGGGAGTGGCGCAAGACGGTGGAACAA
GGGGCGCGCACCGATGACCCGATCTCCTATCTGGACACCCTAATGAAGAC
GGGAAGCGAGAACATTGAGGCGATCATGCGCAGGAGGCGGATCCTGTTCG
CCGGATTCCTGGTATGTATGGACGACACGAGACTGCCGAAGTGCCTAATG
TTCGGAGAAATCATGGGAGGCGCGGGTCGCGTGGGAGGGCAGAAAAAAGA
GTGGATGGGATATCTTCTGAAAGACCTCAAAATGTTCGGTATCAACGCCG
ACCAGTGGACAATCGCAGCCCAGGACGAGGGGGAGTGGCGCAAGACGGTG
GAACAAGGGGCG
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