mRNA_H-elongata_contig65627.14143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65627.14143.1
Unique NamemRNA_H-elongata_contig65627.14143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: D7FXL3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXL3_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.080e-55
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---------------GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKYRDWLAASK 315
            +GGVVGHGESYE++ RREL+EEMG               G LRHCFSF+YKD HTNVWGDAWDC+WGGEI+PQPEEV+SVH +++SELI GRD+AG  L+ TPDGV ALEKYRDWLA +K
Sbjct:   83 TGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETK 202          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A1V1WXX1_9DELT (NUDIX hydrolase n=1 Tax=Desulfobacterales bacterium PC51MH44 TaxID=1869304 RepID=A0A1V1WXX1_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-20
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV   E+YEES RREL+EE+G     L H F FYY+DG+  VWG A+ C++ G+I+ Q EEVES     + E+I     AGN L  TPD ++ L++Y
Sbjct:   66 TGGVVLDKETYEESARRELEEELGIRDVPLSHLFDFYYQDGNNRVWGRAYTCVYDGKIVLQEEEVESGSFRDVDEIIRM---AGNELY-TPDSLYVLKRY 161          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A7Y4U2S0_9DELT (NUDIX hydrolase YfcD n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4U2S0_9DELT)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-20
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKYRDWLAAS 312
            +GGVV  GESYEES RREL+EEMG     L     FY+ D  T VWG A+ C++ G +  Q EEVESV   T+ E+           Q TPDG++ L++YR+ L+A+
Sbjct:   67 TGGVVLAGESYEESARRELEEEMGIRQVPLTRLSDFYFADERTQVWGAAFSCVYEGPLSLQAEEVESVSLMTMDEIFH----RARTEQFTPDGLYVLQRYRENLSAA 169          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A7V3BHW3_9BACT (NUDIX hydrolase YfcD n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3BHW3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.330e-17
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG--GV-LRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV  GE+YE+   REL EEMG  GV L   F FY+++ HT +WG A+ C + GEI+ QPEEVES    +I +++            TPDG++ L +Y
Sbjct:   67 AGGVVLAGETYEQGAERELNEEMGIRGVPLTSLFDFYFENEHTCLWGRAFSCTYDGEIVLQPEEVESGAFVSIQDIL----RRAETEPFTPDGLYVLRRY 162          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A1Q6DM17_9DELT (NUDIX hydrolase n=1 Tax=Desulfobulbaceae bacterium DB1 TaxID=1920419 RepID=A0A1Q6DM17_9DELT)

HSP 1 Score: 77.8 bits (190), Expect = 8.500e-16
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMGGV---LRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVVG GE+YEES RREL+EE+G V   L   F F+++D    VWG A+ C + G +  Q EEVE      + ++    +E   ++  TPDG++AL+++
Sbjct:   68 TGGVVGAGETYEESARRELEEELGIVGQPLDALFDFFWQDEGNRVWGRAFVCRYDGPVALQQEEVEWGEFMPLGQV----NEMVKSMPFTPDGLYALDRF 163          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A2E8YDR9_9GAMM (NUDIX hydrolase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E8YDR9_9GAMM)

HSP 1 Score: 75.1 bits (183), Expect = 8.660e-15
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV + ESY+ S  RE  EE+G     + HCF F+Y+D    +WG  + C++ GE + QPEEVES    ++  + +G          TPD   ALE +
Sbjct:   66 AGGVVLNDESYQLSAEREAAEELGIRQTPIEHCFDFFYEDDLNRIWGAVFKCVYDGEFVLQPEEVESGRFMSVDAVRNGE-----VSPVTPDSEVALEHF 160          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A0S8AF51_9DELT (NUDIX hydrolase n=1 Tax=Desulfobacterales bacterium SG8_35 TaxID=1703400 RepID=A0A0S8AF51_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-14
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV  GESY+ES RREL+EE+G    VL   F+F+Y++G   VWG  + C+   E+  Q EE+ES      ++++          + TPDG+  L++Y
Sbjct:   67 AGGVVLDGESYDESARRELEEELGIRDAVLTPHFTFFYEEGTNQVWGRVYSCIHDEEMTLQAEEIESGFFADPAQVLA----LSKTKKFTPDGIHVLKRY 162          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A0S7YVC9_9DELT (Nudix hydrolase domain-containing protein n=1 Tax=Deltaproteobacteria bacterium SG8_13 TaxID=1703398 RepID=A0A0S7YVC9_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 1.510e-14
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG----GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV  GE+Y ES +REL EE+G     + RH F FY++D  + +WG  + C + G I+ QPEE+ES     + +++D           TPDG+  L+++
Sbjct:   66 AGGVVLRGETYHESAKRELAEELGISGVEIQRH-FDFYHQDDRSRLWGRVYSCRYDGPIVLQPEEIESGAFCEVEQVLD----MSTRELFTPDGLVVLKRF 161          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: A0A0S8CVI4_9DELT (NUDIX hydrolase n=1 Tax=Desulfobacterales bacterium SG8_35_2 TaxID=1703401 RepID=A0A0S8CVI4_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 3.120e-14
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKY 291
            +GGVV  GESY+ES RREL EE+G     L   F+FYY++G   VWG  + C+  G+++ Q EEV S       +++    E       TPDG++ L++Y
Sbjct:   75 AGGVVLAGESYDESARRELHEELGIQNVSLAALFTFYYEEGKNKVWGRVYSCIHDGKLVLQAEEVASGFFAFPEKVLQISAEE----PFTPDGLYVLKRY 170          
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Match: W4L4J0_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4L4J0_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.760e-13
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 SGGVVGHGESYEESTRRELQEEMG---GVLRHCFSFYYKDGHTNVWGDAWDCLWGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKYRD 297
            +GGVV HGESYE S  REL+EE+G     L   F+ Y++D    VWG  + C++ G+++ Q EEVES     I  ++    +  +    TPD V  L +Y D
Sbjct:   67 TGGVVLHGESYELSATRELEEEVGIRDVPLTWHFNVYFEDDGCRVWGSVFSCVYDGDMVLQAEEVESGEFLPIETIL----QRVHFAPYTPDSVMVLRRYLD 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65627.14143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL3_ECTSI2.080e-5567.50Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A1V1WXX1_9DELT1.060e-2048.00NUDIX hydrolase n=1 Tax=Desulfobacterales bacteriu... [more]
A0A7Y4U2S0_9DELT1.060e-2045.79NUDIX hydrolase YfcD n=1 Tax=Deltaproteobacteria b... [more]
A0A7V3BHW3_9BACT1.330e-1744.00NUDIX hydrolase YfcD n=1 Tax=bacterium TaxID=18692... [more]
A0A1Q6DM17_9DELT8.500e-1641.00NUDIX hydrolase n=1 Tax=Desulfobulbaceae bacterium... [more]
A0A2E8YDR9_9GAMM8.660e-1538.00NUDIX hydrolase n=1 Tax=Thiotrichales bacterium Ta... [more]
A0A0S8AF51_9DELT1.160e-1439.00NUDIX hydrolase n=1 Tax=Desulfobacterales bacteriu... [more]
A0A0S7YVC9_9DELT1.510e-1437.62Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A0S8CVI4_9DELT3.120e-1440.00NUDIX hydrolase n=1 Tax=Desulfobacterales bacteriu... [more]
W4L4J0_9BACT1.760e-1339.22Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65627contigH-elongata_contig65627:1378..2651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue8.4e-43
Seed eggNOG ortholog2880.D7FXL3
EggNOG free text desc.hydrolase
EggNOG OGs2ARP2@1,2RZMS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-28_002140.1
Exons3
Model size321
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65627.14143.1prot_H-elongata_contig65627.14143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65627 1378..2651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.788391-CDS-H-elongata_contig65627:1377..15211622931042.788391-CDS-H-elongata_contig65627:1377..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 1378..1521 -
1691679674.3374903-CDS-H-elongata_contig65627:1377..15211691679674.3374903-CDS-H-elongata_contig65627:1377..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 1378..1521 -
1622931042.806211-CDS-H-elongata_contig65627:2393..24981622931042.806211-CDS-H-elongata_contig65627:2393..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 2394..2498 -
1691679674.3511596-CDS-H-elongata_contig65627:2393..24981691679674.3511596-CDS-H-elongata_contig65627:2393..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 2394..2498 -
1622931042.8288307-CDS-H-elongata_contig65627:2579..26511622931042.8288307-CDS-H-elongata_contig65627:2579..2651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 2580..2651 -
1691679674.3590508-CDS-H-elongata_contig65627:2579..26511691679674.3590508-CDS-H-elongata_contig65627:2579..2651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65627 2580..2651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65627.14143.1

>prot_H-elongata_contig65627.14143.1 ID=prot_H-elongata_contig65627.14143.1|Name=mRNA_H-elongata_contig65627.14143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
SGGVVGHGESYEESTRRELQEEMGGVLRHCFSFYYKDGHTNVWGDAWDCL
WGGEIIPQPEEVESVHCHTISELIDGRDEAGNALQCTPDGVFALEKYRDW
LAASKG*
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mRNA from alignment at H-elongata_contig65627:1378..2651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65627.14143.1 ID=mRNA_H-elongata_contig65627.14143.1|Name=mRNA_H-elongata_contig65627.14143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1274bp|location=Sequence derived from alignment at H-elongata_contig65627:1378..2651- (Himanthalia elongata Himel1 dioecious)
TCAGGGGGGGTCGTGGGGCATGGCGAGTCGTATGAAGAGAGCACGAGGCG GGAGTTGCAAGAAGAAATGGGCGTTACGGCCAAGCATGAAACCGCCACTA TCGCGAGCGCCGGTGGTGGCAGCGGCAGCGGTAGCGGCGGCGGAAGAGAG GAGGGTGTCCTGCGGCATTGCTTCTCCTTCTACTACAAGGATGGCCACAC GAATGTTTGGGGGGATGCTTGGGACTGTTTGTGGGGGGGAGAGATCATCC CTCAACCTGTGAGAGGACCATACCATACCATACCATACTATACCATACCA TACCCGAGGCGAAACGGGGGGGGGGATACTAAGTTTTGTAATGCCTTAGC TGTTAGGGCCGTGTAAGATTACTTGAGTGTACTGCAATGTATTGGTGTGA CTGTGTAATGGACAGAGTAAGATATTATTATAGTAACATCTACATCTACA TACCAGTATAGTATAGTATAGTATGTATATCACAATGAACACTCGAACCT GACGATATAGTATAATAGCTGGTCACCTCGCATAGTGTGTAAAGTGTGGA TGTTCGGAGGGTTTGTATAAGTTCATTTTTTTTTTAACATAAATATATAC TGGTTCTATACCCTGGTATACTCTATCTCGATATAACTCTCTAAATATCT CTCTCTACAGATATGTAGCCACATGCAGTTCGTTAACAATTGTGTGTGTT CTCTTTTTTGTATTTATTTTTCTTTGGAGTTGTTCCTTTTTCCGAGTATT TCGATTATGCATCATTGCCGTTTCCTTTTGTATTGGAGAATACGTTGAAC ATTTTTCTCCTTCCGGATGGTGTTTTAAAAGACTTGTGACCACGGGCTGG ATTTTGACATCAGCTTATGTGGTAATTCAATCAATAGAATAAATAAATAA TCTAAGTCTCTCTCTCTCTCCCTATATATATCTTAAGTATATATCTTTCT ATATATATCTCCATGAGATTTTGTTGATTTCGCCGTTTTGTGCTTATTCG AACACTCACTGTCACACATACATCCACACAGACATGACGAGAGACACCGC GTGCGATGTTGGCGAAGCCTCATTCCTCACTCTATATTTCCCTCCCTCCA TACATCCCTCGCGTTTTGTTTTGTTTCCAGGAGGAAGTGGAAAGCGTCCA CTGCCACACCATCTCGGAGTTGATCGACGGAAGGGACGAGGCGGGCAACG CTCTGCAGTGCACGCCGGACGGAGTCTTCGCCCTCGAAAAGTACAGGGAC TGGCTGGCGGCTAGCAAAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig65627:1378..2651-

>mRNA_H-elongata_contig65627.14143.1 ID=mRNA_H-elongata_contig65627.14143.1|Name=mRNA_H-elongata_contig65627.14143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig65627:1378..2651- (Himanthalia elongata Himel1 dioecious)
TCAGGGGGGGTCGTGGGGCATGGCGAGTCGTATGAAGAGAGCACGAGGCG
GGAGTTGCAAGAAGAAATGGGCTCAGGGGGGGTCGTGGGGCATGGCGAGT
CGTATGAAGAGAGCACGAGGCGGGAGTTGCAAGAAGAAATGGGCGGTGTC
CTGCGGCATTGCTTCTCCTTCTACTACAAGGATGGCCACACGAATGTTTG
GGGGGATGCTTGGGACTGTTTGTGGGGGGGAGAGATCATCCCTCAACCTG
GTGTCCTGCGGCATTGCTTCTCCTTCTACTACAAGGATGGCCACACGAAT
GTTTGGGGGGATGCTTGGGACTGTTTGTGGGGGGGAGAGATCATCCCTCA
ACCTGAGGAAGTGGAAAGCGTCCACTGCCACACCATCTCGGAGTTGATCG
ACGGAAGGGACGAGGCGGGCAACGCTCTGCAGTGCACGCCGGACGGAGTC
TTCGCCCTCGAAAAGTACAGGGACTGGCTGGCGGCTAGCAAAGGGTAGGA
GGAAGTGGAAAGCGTCCACTGCCACACCATCTCGGAGTTGATCGACGGAA
GGGACGAGGCGGGCAACGCTCTGCAGTGCACGCCGGACGGAGTCTTCGCC
CTCGAAAAGTACAGGGACTGGCTGGCGGCTAGCAAAGGGTAG
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