mRNA_H-elongata_contig65613.14141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65613.14141.1
Unique NamemRNA_H-elongata_contig65613.14141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65613.14141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65613contigH-elongata_contig65613:2413..2674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size245
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65613.14141.1prot_H-elongata_contig65613.14141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65613 2413..2553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.6315293-CDS-H-elongata_contig65613:2412..25291622931042.6315293-CDS-H-elongata_contig65613:2412..2529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65613 2413..2529 +
1691679674.2691486-CDS-H-elongata_contig65613:2412..25291691679674.2691486-CDS-H-elongata_contig65613:2412..2529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65613 2413..2529 +
1622931042.64401-CDS-H-elongata_contig65613:2547..25531622931042.64401-CDS-H-elongata_contig65613:2547..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65613 2548..2553 +
1691679674.2799811-CDS-H-elongata_contig65613:2547..25531691679674.2799811-CDS-H-elongata_contig65613:2547..2553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65613 2548..2553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.6555824-UTR-H-elongata_contig65613:2553..26741622931042.6555824-UTR-H-elongata_contig65613:2553..2674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65613 2554..2674 +
1691679674.2876568-UTR-H-elongata_contig65613:2553..26741691679674.2876568-UTR-H-elongata_contig65613:2553..2674Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65613 2554..2674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65613.14141.1

>prot_H-elongata_contig65613.14141.1 ID=prot_H-elongata_contig65613.14141.1|Name=mRNA_H-elongata_contig65613.14141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
ENNFPCCPTSRLLNLVHTPGILSILSISTTASIYLLLPTI*
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mRNA from alignment at H-elongata_contig65613:2413..2674+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65613.14141.1 ID=mRNA_H-elongata_contig65613.14141.1|Name=mRNA_H-elongata_contig65613.14141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=262bp|location=Sequence derived from alignment at H-elongata_contig65613:2413..2674+ (Himanthalia elongata Himel1 dioecious)
GAAAATAATTTCCCCTGTTGTCCCACTTCGCGCCTGTTGAATCTGGTGCA
TACTCCCGGGATCCTCTCAATCCTCTCAATTTCCACGACGGCGTCCATCT
ATCTACTACTGCCAACCGCCATCGGGCCAATCCAGATTTAATCAGCGCAA
TGTACCGACGGCGTTTACTACCGAGCTACCGCCAGCACTGAGCCAATAGT
CCTCAAGGTAGTTTGACTAACGGGTGTAGCCTATTGAGGCAACCCCAATT
ATTGTACGCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig65613:2413..2674+

>mRNA_H-elongata_contig65613.14141.1 ID=mRNA_H-elongata_contig65613.14141.1|Name=mRNA_H-elongata_contig65613.14141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig65613:2413..2674+ (Himanthalia elongata Himel1 dioecious)
GAAAATAATTTCCCCTGTTGTCCCACTTCGCGCCTGTTGAATCTGGTGCA
TACTCCCGGGATCCTCTCAATCCTCTCAATTTCCACGACGGCGTCCATCT
ATCTACTACTGCCAACCGAAAATAATTTCCCCTGTTGTCCCACTTCGCGC
CTGTTGAATCTGGTGCATACTCCCGGGATCCTCTCAATCCTCTCAATTTC
CACGACGGCGTCCATCTATCTACTACTGCCAACCATTTAAATTTAA
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