mRNA_H-elongata_contig65574.14138.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI) HSP 1 Score: 208 bits (529), Expect = 5.860e-59 Identity = 129/245 (52.65%), Postives = 151/245 (61.63%), Query Frame = 1
Query: 1 QVAEHAGGNLDFFIKFHIYCQELKQICLDSMSDAKEMENLARIAAKRKSPEPRTAQSEASEKSVADYGGEGTGGTLPFPPPSPTDGTDKIATLGTVALQKRPSESPSVGGLTSGGG---LSGSADQ--TTARGVEEEGNREKHDGRGEEEPWGVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQVRFSGVGFCLVPLNSIKR 720
QV HA G+L FFIKFHIYCQE KQICLDS+SDAKEMENLAR A + +S A++ V G T G + G ++ R S T GGG L S D+ T +E G + +G+G PWGVVLRNTIIRDL GFGMEHAG IGRSLIS+VL+VSQDNYPEMM +CYIINAPWVFYALWKGL PL+SA TAKK+Q+ V CL S++R
Sbjct: 185 QVTAHANGDLGFFIKFHIYCQEFKQICLDSLSDAKEMENLARRAKRASXXXXXXXESTATDPRVPATGXXXXXXXXXXXXXXTTGGGGRDTGAGR-GMRGRAS--------TIGGGGLPLPESEDKGGTVPPKLEGRGVESEEEGKG---PWGVVLRNTIIRDLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTAKKVQMLKYDVLSCLSETISLER 417
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE) HSP 1 Score: 206 bits (523), Expect = 4.020e-57 Identity = 123/222 (55.41%), Postives = 142/222 (63.96%), Query Frame = 1
Query: 4 VAEHAGGNLDFFIKFHIYCQELKQICLDSMSDAKEMENLARIAAKRKSPEPRTAQSEASEKSVADYGGEGTGGTLPFPPPSPTDGTDKIATLGTVALQKRPSESPSVGGLTSGGGLSGSADQTTARGVEEEGNREKHDGRGEEEPWGVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
V HA G+L FFIKFHIYCQE KQICLDS+SDAKEMENLAR A + SP +S A+ V GG +GG + +G D A G + + + GGL L S D + + GEE PWGVVLRNTIIRDL GFGMEHAG IGRSLIS+VL+VSQDNYPEMM +CYIINAPWVFYALWKGL PL+SA TA K+Q+
Sbjct: 273 VTAHANGDLGFFIKFHIYCQEFKQICLDSLSDAKEMENLARRAKRASSPSRPPTESTATGPRVPAIGGGRSGGXXXT---TGGEGRDTGAGRG----MRGNASTIGRGGLP----LPESEDXXXXXXXXXXXXXVESEKEGEE-PWGVVLRNTIIRDLSGFGMEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTANKVQM 482
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A7S3USY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY2_HETAK) HSP 1 Score: 95.5 bits (236), Expect = 7.540e-20 Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 448 VLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
V+R+T++RDL GFG+EHA GR ++ V++V+ NYPEMM RC I+NAPWVF+ LW+ + P++S ++A K++V
Sbjct: 2 VVRHTVVRDLGGFGLEHAQARGREILRVVMAVTTANYPEMMHRCIIVNAPWVFFTLWRVIKPMLSEHSANKVKV 75
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A835YKX5_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.370e-19 Identity = 36/66 (54.55%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 472 DLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
DL GF MEHAGP R L+ +V+SVS NYPE+M C+++NAPW+F+A++KG+ PL+SA+T K+++
Sbjct: 1 DLRGFSMEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 66
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A7S2V3E4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3E4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.270e-16 Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 430 EEPWGVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQVRFSGVGFCLVPLNSIKRET 726
E+ WG VL+ IIRDL GF EH GP+GR S+++ VSQ NYP +M C +IN P++F A WK + PL+ +T +KI F G F I+ ET
Sbjct: 113 EDGWGEVLQVFIIRDLGGFNTEHLGPVGRDTSSRIVQVSQANYPNVMYCCCLINTPFLFRAFWKLIKPLLPTHTTRKIH--FYGKSFVQDLSKFIEPET 209
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A7S3GTP2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTP2_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.570e-13 Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 436 PWGVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
P+GV++ ++RDL+G G H G+ +I V++V+ DNYPE+M +C++INAP++F A W + +S T K+ +
Sbjct: 180 PYGVIVNICVVRDLNGVGFAHLSAQGQEIIKAVIAVASDNYPELMRKCFMINAPFLFNAAWYVIKGFLSPRTLAKVSL 257
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A7S3M0V6_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0V6_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.310e-12 Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 436 PWGVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
P+GV++ ++RDL+G G H G+ +I V++V+ DNYPE+M +C++INAP++F A W + +S T K+ +
Sbjct: 180 PYGVIVNICVVRDLNGVGFAHLSAQGQEIIKAVIAVASDNYPELMRKCFMINAPFLFNAAWYVIKGFLSPRTLAKVSL 257
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A830HAR5_9CHLO (Cytosolic factor, phosphatidylinositol/phosphatidylcholine transfer protein n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HAR5_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 8.470e-10 Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 448 VLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
V + ++ ++DG G R +++K+ SVSQDNYPEM+ + +IINAP+ F +W + P+++ T +KI+V
Sbjct: 261 VDQTCVVLNVDGVSTRQFGGEIRQILTKIASVSQDNYPEMLGKMFIINAPFTFRVIWAAIRPMLNERTKEKIEV 334
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: C5LMF5_PERM5 (Phosphatidylinositol/phosphatidylcholine transfer protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LMF5_PERM5) HSP 1 Score: 65.1 bits (157), Expect = 7.240e-9 Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 442 GVVLRNTIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
GV TII DL G G++ P ++++ K+ V+ DNYPE++ +++NAP++F A+WK ++P+V T KI V
Sbjct: 163 GVDKTCTII-DLKGLGLKQFTPQVKNMMQKLAKVANDNYPEVLGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVV 237
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Match: A0A7S3G6M9_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6M9_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 1.000e-8 Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 460 TIIRDLDGFGMEHAGPIGRSLISKVLSVSQDNYPEMMARCYIINAPWVFYALWKGLTPLVSANTAKKIQV 669
T+I + G GM+HA P S I K+ QDN+PE M CYI+N P F A WK + P++S T +K++V
Sbjct: 161 TLI-NAKGVGMQHAAPNAISTIKKLFGPGQDNFPENMKVCYILNTPAFFAACWKLIEPMLSKRTREKVKV 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65574.14138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65574.14138.1 >prot_H-elongata_contig65574.14138.1 ID=prot_H-elongata_contig65574.14138.1|Name=mRNA_H-elongata_contig65574.14138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp QVAEHAGGNLDFFIKFHIYCQELKQICLDSMSDAKEMENLARIAAKRKSPback to top mRNA from alignment at H-elongata_contig65574:742..2998+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65574.14138.1 ID=mRNA_H-elongata_contig65574.14138.1|Name=mRNA_H-elongata_contig65574.14138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2257bp|location=Sequence derived from alignment at H-elongata_contig65574:742..2998+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65574:742..2998+ >mRNA_H-elongata_contig65574.14138.1 ID=mRNA_H-elongata_contig65574.14138.1|Name=mRNA_H-elongata_contig65574.14138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig65574:742..2998+ (Himanthalia elongata Himel1 dioecious)back to top |