mRNA_H-elongata_contig65545.14137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65545.14137.1
Unique NamemRNA_H-elongata_contig65545.14137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: D7G5A2_ECTSI (Probable chromatin remodelling complex ATPase chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A2_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 4.730e-54
Identity = 117/194 (60.31%), Postives = 144/194 (74.23%), Query Frame = 1 
Query:  142 SGAGSNSAPVKMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAEIAAKQAAKRQARHADPASKSYMRERALVRPGGPKRERRITMEEDMSPERLAARKKAKQQRDEQKAGRLAREAESDRQKKSIAAAAAAMARKRIKYILRQSDIFATHFGVTLSES 723
            SGAG+  APVK   SAY +FQ +QY+N+KD+F GL++G+ GAEI+RRW+ +   ER+R+ AL AEDRKRF+ ES ARDAE+AA+Q A R AR+ADPAS +YMRERA V P   K+ER++T EEDMS ERL AR+ AK++R +QK  RLA EAE               ARKRIKYILRQSDIFATHFGV LS+S
Sbjct:    4 SGAGAFGAPVKAATSAYMFFQGDQYSNHKDEFAGLALGQQGAEISRRWRELPQEERSRFDALAAEDRKRFQEESEARDAEVAARQEANRAARYADPASSTYMRERASVEP---KKERKVTREEDMSEERLEARRLAKEKRAKQKDARLAAEAEXXXXXXXXXXXXXXXARKRIKYILRQSDIFATHFGVALSDS 194
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BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: A0A1Y2X1X1_9PEZI (HMG box domain-containing protein n=18 Tax=Fungi TaxID=4751 RepID=A0A1Y2X1X1_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 8.500e-7
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +D+  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A  AE
Sbjct:   27 KRGLSAYMFFANEQRENVRDENPGISFGQVGKILGERWKALNDKQRAPYEAKAAADKKRYEDEKQAYQAE 96
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BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: A0A8H5DGD2_9HYPO (HMG box domain-containing protein n=15 Tax=Sordariomycetes TaxID=147550 RepID=A0A8H5DGD2_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 9.560e-7
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  118 GPSEDHTMSGAGSNSAPVKMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            G   + T  G    +AP K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +A+
Sbjct:   10 GGKTEKTKRGKKDPNAP-KRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNAD 96
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BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: T5AGK8_OPHSC (HMG box protein n=2 Tax=Ophiocordyceps sinensis TaxID=72228 RepID=T5AGK8_OPHSC)

HSP 1 Score: 55.1 bits (131), Expect = 2.130e-6
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +D+  G+S G+ G  +  RWK++  ++R  Y+A  A D+KR+E E +A +AE
Sbjct:   23 KRGLSAYMFFANEQRENVRDENPGISFGQVGKLLGERWKALNDKQRGPYEAKAAADKKRYEDEKQAYNAE 92
[Close]
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: A0A369H951_9HYPO (HMG box domain-containing protein n=11 Tax=Hypocreales TaxID=5125 RepID=A0A369H951_9HYPO)

HSP 1 Score: 55.1 bits (131), Expect = 2.340e-6
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +AE
Sbjct:   26 KRGLSAYMFFANEQRENVREENPGISFGQVGKILGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNAE 95
[Close]
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: W7LC01_GIBM7 (Structure-specific recognition protein 1 n=42 Tax=Fusarium TaxID=5506 RepID=W7LC01_GIBM7)

HSP 1 Score: 54.7 bits (130), Expect = 3.380e-6
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  130 DHTMSGAGSNSAPVKMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            + T  G    +AP K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +A+
Sbjct:   13 EKTKRGKKDPNAP-KRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNAD 95
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BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 n=6 Tax=Sordariaceae TaxID=5148 RepID=NHP6_NEUCR)

HSP 1 Score: 54.7 bits (130), Expect = 3.460e-6
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +AE
Sbjct:   27 KRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAE 96
[Close]
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: A0A420PYT2_FUSOX (HMG box domain-containing protein n=2 Tax=Fusarium TaxID=5506 RepID=A0A420PYT2_FUSOX)

HSP 1 Score: 54.7 bits (130), Expect = 5.730e-6
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  130 DHTMSGAGSNSAPVKMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            + T  G    +AP K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +A+
Sbjct:   37 EKTKRGKKDPNAP-KRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNAD 119
[Close]
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: A0A2C5YJL9_9HYPO (HMG box domain-containing protein n=2 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5YJL9_9HYPO)

HSP 1 Score: 53.9 bits (128), Expect = 6.000e-6
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +A+
Sbjct:   25 KRGLSAYMFFANEQRENVREENPGISFGQVGKILGERWKALNEKQRAPYEAKAATDKKRYEDEKQAYNAD 94
[Close]
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Match: C7YHL0_FUSV7 (HMG box-containing protein n=8 Tax=Fusarium TaxID=5506 RepID=C7YHL0_FUSV7)

HSP 1 Score: 53.9 bits (128), Expect = 6.280e-6
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  172 KMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWKSMGTRERARYQALHAEDRKRFEMESRARDAE 381
            K  +SAY +F  EQ  N +++  G+S G+ G  +  RWK++  ++RA Y+A  A D+KR+E E +A +A+
Sbjct:   25 KRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAYNAD 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65545.14137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5A2_ECTSI4.730e-5460.31Probable chromatin remodelling complex ATPase chai... [more]
A0A1Y2X1X1_9PEZI8.500e-741.43HMG box domain-containing protein n=18 Tax=Fungi T... [more]
A0A8H5DGD2_9HYPO9.560e-736.36HMG box domain-containing protein n=15 Tax=Sordari... [more]
T5AGK8_OPHSC2.130e-640.00HMG box protein n=2 Tax=Ophiocordyceps sinensis Ta... [more]
A0A369H951_9HYPO2.340e-640.00HMG box domain-containing protein n=11 Tax=Hypocre... [more]
W7LC01_GIBM73.380e-636.90Structure-specific recognition protein 1 n=42 Tax=... [more]
NHP6_NEUCR3.460e-640.00Non-histone chromosomal protein 6 n=6 Tax=Sordaria... [more]
A0A420PYT2_FUSOX5.730e-636.90HMG box domain-containing protein n=2 Tax=Fusarium... [more]
A0A2C5YJL9_9HYPO6.000e-638.57HMG box domain-containing protein n=2 Tax=Ophiocor... [more]
C7YHL0_FUSV76.280e-638.57HMG box-containing protein n=8 Tax=Fusarium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65545contigH-elongata_contig65545:354..1845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue5.3e-49
Seed eggNOG ortholog2880.D7G5A2
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65545.14137.1prot_H-elongata_contig65545.14137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65545 354..1707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.290731-CDS-H-elongata_contig65545:353..4711622931042.290731-CDS-H-elongata_contig65545:353..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65545 354..471 -
1691679674.126612-CDS-H-elongata_contig65545:353..4711691679674.126612-CDS-H-elongata_contig65545:353..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65545 354..471 -
1622931042.3042462-CDS-H-elongata_contig65545:1189..17071622931042.3042462-CDS-H-elongata_contig65545:1189..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65545 1190..1707 -
1691679674.1377122-CDS-H-elongata_contig65545:1189..17071691679674.1377122-CDS-H-elongata_contig65545:1189..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65545 1190..1707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.3227227-UTR-H-elongata_contig65545:1707..18451622931042.3227227-UTR-H-elongata_contig65545:1707..1845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65545 1708..1845 -
1691679674.1501007-UTR-H-elongata_contig65545:1707..18451691679674.1501007-UTR-H-elongata_contig65545:1707..1845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65545 1708..1845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65545.14137.1

>prot_H-elongata_contig65545.14137.1 ID=prot_H-elongata_contig65545.14137.1|Name=mRNA_H-elongata_contig65545.14137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MSGAGSNSAPVKMVMSAYAYFQTEQYTNNKDDFIGLSVGKAGAEIARRWK
SMGTRERARYQALHAEDRKRFEMESRARDAEIAAKQAAKRQARHADPASK
SYMRERALVRPGGPKRERRITMEEDMSPERLAARKKAKQQRDEQKAGRLA
REAESDRQKKSIAAAAAAMARKRIKYILRQSDIFATHFGVTLSESEDEED
EAQEEQAAAAGL
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mRNA from alignment at H-elongata_contig65545:354..1845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65545.14137.1 ID=mRNA_H-elongata_contig65545.14137.1|Name=mRNA_H-elongata_contig65545.14137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-elongata_contig65545:354..1845- (Himanthalia elongata Himel1 dioecious)
TGGGAAGGAGCTTTAAAAGAGCACTGCTTTGGTAATTCGAGAGTGGTGCA
CTTGTCACCGCGCCGCCCGTGGTGTGTGATCCGTGGTACTATTTTTGGCT
GCAGCTCGAGGTTCTGAGGTCCTTCGGAGGATCATACCATGTCGGGGGCC
GGATCGAACAGCGCGCCGGTCAAAATGGTGATGTCGGCGTACGCATACTT
TCAAACTGAACAATACACCAACAATAAAGATGACTTCATTGGATTGTCTG
TTGGTAAAGCGGGGGCCGAGATCGCGCGTCGCTGGAAGTCGATGGGAACA
AGGGAGAGGGCGCGATACCAAGCTTTACATGCAGAGGATCGTAAGCGCTT
TGAAATGGAATCTCGAGCAAGGGATGCAGAGATCGCGGCTAAGCAGGCAG
CGAAACGTCAAGCCCGCCATGCCGATCCAGCCTCCAAGAGCTATATGCGG
GAACGAGCCCTGGTGAGGCCAGGAGGGCCCAAGAGGGAGCGAAGGATAAC
AATGGAGGAGGATATGTCACCCGAGAGACTGGCTGCGAGGAAGAAAGCCA
AGCAACAGCGGGACGAGCAAAAAGCGGGCAGGCTTGCTCGGGAGGCGGAG
AGCGATCGACAGAAGAAAAGCATTGCCGCGGCTGCTGCGGCTATGGCTCG
TAAGAGGTGAGTCTTGTACGGCGAAGAAAAATCAACGCGTAGGTAGTGCC
TAAGTTGTTCGTAGTAGCCCTACCTATGACTGCCTCTGAAGGGGATAAGA
AAGCTGCGCGTGCCTGTCATAAAAATCTATGTAGGATAATCGTGTCTGAG
TGGTCGATAAATGCACAAAGTTGCTCCGTTCTTCTCGTGACATAAGGCCC
CTTCCTCCCCGGGAGTAATTCGATCGGGGGCATATCTGTCGAAGGTATCG
AGGGAGTGGGCAGGGGCGGGATACAGCTGGACTTGACGCCTCCGGGAAAC
GATAGCGGGGTACATATAGCTGGATGTCCTCAACTTATTCGGCGAGAGAG
GGTGTGTTACGCTTTCTATCCCAGGCCTTAAGCAAAGTAACTTACGCGGG
TTCTTTAACTACAGAACTTAAAATACTGCTGTTTGCTTGTGGTCGCCTTG
CACCTCAAGTTTTACCGTGAGGCGATTACAGTATGCCAAATGTGCATTTC
AATAACCGCGATTACGAATTTAGCCTTGATACTCTACAGTACAAGCTGGA
AGGTCAAAGGTGGTAAATCCGTTCCTCACTTTCACCATCTCATGTATTCT
CTAGCTCAAACACACACACACACAAGTTATTTTTACGATATGAACCACGT
CTCACGTCAACATATTACCATCTTTCGCGCGGTCCTTGTGTGGGTATAAT
CCCCCCTGGGGGGTCTCCCTTCAGGATTAAATACATCCTTAGGCAGTCGG
ATATATTCGCCACACACTTTGGCGTTACCCTTAGCGAGTCGGAAGACGAG
GAAGACGAGGCCCAAGAGGAGCAGGCTGCGGCTGCGGGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig65545:354..1845-

>mRNA_H-elongata_contig65545.14137.1 ID=mRNA_H-elongata_contig65545.14137.1|Name=mRNA_H-elongata_contig65545.14137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig65545:354..1845- (Himanthalia elongata Himel1 dioecious)
ATGTCGGGGGCCGGATCGAACAGCGCGCCGGTCAAAATGGTGATGTCGGC
GTACGCATACTTTCAAACTGAACAATACACCAACAATAAAGATGACTTCA
TTGGATTGTCTGTTGGTAAAGCGGGGGCCGAGATCGCGCGTCGCTGGAAG
TCGATGGGAACAAGGGAGAGGGCGCGATACCAAGCTTTACATGCAGAGGA
TCGTAAGCGCTTTGAAATGGAATCTCGAGCAAGGGATGCAGAGATCGCGG
CTAAGCAGGCAGCGAAACGTCAAGCCCGCCATGCCGATCCAGCCTCCAAG
AGCTATATGCGGGAACGAGCCCTGGTGAGGCCAGGAGGGCCCAAGAGGGA
GCGAAGGATAACAATGGAGGAGGATATGTCACCCGAGAGACTGGCTGCGA
GGAAGAAAGCCAAGCAACAGCGGGACGAGCAAAAAGCGGGCAGGCTTGCT
CGGGAGGCGGAGAGCGATCGACAGAAGAAAAGCATTGCCGCGGCTGCTGC
GGCTATGGCTCGTAAGAGATGTCGGGGGCCGGATCGAACAGCGCGCCGGT
CAAAATGGTGATGTCGGCGTACGCATACTTTCAAACTGAACAATACACCA
ACAATAAAGATGACTTCATTGGATTGTCTGTTGGTAAAGCGGGGGCCGAG
ATCGCGCGTCGCTGGAAGTCGATGGGAACAAGGGAGAGGGCGCGATACCA
AGCTTTACATGCAGAGGATCGTAAGCGCTTTGAAATGGAATCTCGAGCAA
GGGATGCAGAGATCGCGGCTAAGCAGGCAGCGAAACGTCAAGCCCGCCAT
GCCGATCCAGCCTCCAAGAGCTATATGCGGGAACGAGCCCTGGTGAGGCC
AGGAGGGCCCAAGAGGGAGCGAAGGATAACAATGGAGGAGGATATGTCAC
CCGAGAGACTGGCTGCGAGGAAGAAAGCCAAGCAACAGCGGGACGAGCAA
AAAGCGGGCAGGCTTGCTCGGGAGGCGGAGAGCGATCGACAGAAGAAAAG
CATTGCCGCGGCTGCTGCGGCTATGGCTCGTAAGAGGATTAAATACATCC
TTAGGCAGTCGGATATATTCGCCACACACTTTGGCGTTACCCTTAGCGAG
TCGGAAGACGAGGAAGACGAGGCCCAAGAGGAGCAGGCTGCGGCTGCGGG
GTTGGATTAAATACATCCTTAGGCAGTCGGATATATTCGCCACACACTTT
GGCGTTACCCTTAGCGAGTCGGAAGACGAGGAAGACGAGGCCCAAGAGGA
GCAGGCTGCGGCTGCGGGGTTG
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