mRNA_H-elongata_contig65524.14135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65524.14135.1
Unique NamemRNA_H-elongata_contig65524.14135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65524.14135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65524contigH-elongata_contig65524:822..2825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004680.1
Exons1
Model size2004
Cds size1260
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65524.14135.1prot_H-elongata_contig65524.14135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65524 938..2197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.0029356-UTR-H-elongata_contig65524:821..9371622931042.0029356-UTR-H-elongata_contig65524:821..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65524 822..937 +
1691679674.0558777-UTR-H-elongata_contig65524:821..9371691679674.0558777-UTR-H-elongata_contig65524:821..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65524 822..937 +
1622931042.0412173-UTR-H-elongata_contig65524:2197..28251622931042.0412173-UTR-H-elongata_contig65524:2197..2825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65524 2198..2825 +
1691679674.080298-UTR-H-elongata_contig65524:2197..28251691679674.080298-UTR-H-elongata_contig65524:2197..2825Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65524 2198..2825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.0226164-CDS-H-elongata_contig65524:937..21971622931042.0226164-CDS-H-elongata_contig65524:937..2197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 938..2197 +
1691679674.068488-CDS-H-elongata_contig65524:937..21971691679674.068488-CDS-H-elongata_contig65524:937..2197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 938..2197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65524.14135.1

>prot_H-elongata_contig65524.14135.1 ID=prot_H-elongata_contig65524.14135.1|Name=mRNA_H-elongata_contig65524.14135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=420bp
MSDGYRHPSSDDAARNANAEPDDRSRHQSDGCGVQSCRSSPSPLSPLRKT
PQGAGIDGVDTLATSLSLSQKDASEMLRRSAPAPHGEGEHAEIGSRVLMG
EDGVSARQRTPTPRDIVDTITGTEYLCSQNDKGLGGRTMKAEETVCAEGQ
PAEAALLGKDVIQTAPSSRKGSRLADSLDARRVRGHISDDEQHACIGDNG
GDRSGKSEERERITTSNMERRPSFEQVLAGEVVPVTSVNSSPRIEGIAQS
NTSYVEGSTHTCSSGTSGSWTSRSTGSHISEHSSAAWISRGGEDMSAGGG
ETSRQSPGSHSPHLTANVLDLQPCNDDEPLVSEDQKGPAVNSANVKPSPL
ATGTLTTQVAGAPSSDIPVGNLTTEVEVGPQDHPGEVDVGAESTPLSTSL
APAGRGGEGKNLGSSESPR*
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mRNA from alignment at H-elongata_contig65524:822..2825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65524.14135.1 ID=mRNA_H-elongata_contig65524.14135.1|Name=mRNA_H-elongata_contig65524.14135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2004bp|location=Sequence derived from alignment at H-elongata_contig65524:822..2825+ (Himanthalia elongata Himel1 dioecious)
GTGGTGCAAAGGGCATTCCTCGCGGCGACGACGATCACGAGCAATCATCA
TCTGGATTCACCGGTAGCGAAGAGGGGGACACTCGGACAGGAGGTACTGA
GTCCGGGGACGCCAGCATGTCCGACGGGTATCGACATCCCTCGAGCGACG
ACGCAGCCAGGAACGCGAATGCCGAACCCGATGATCGTTCCCGACATCAG
AGCGATGGATGTGGGGTCCAATCTTGTCGGTCGTCCCCATCACCTTTGTC
GCCTCTCAGAAAAACGCCTCAGGGAGCTGGCATCGACGGGGTGGATACGC
TGGCAACCTCCTTGTCGCTCTCTCAGAAAGATGCGTCGGAAATGTTGCGC
CGATCAGCACCAGCTCCGCACGGTGAAGGCGAGCATGCCGAGATAGGTAG
CCGAGTGCTGATGGGAGAAGATGGGGTGAGCGCCCGGCAACGCACGCCCA
CACCGCGCGATATAGTTGACACTATCACAGGCACAGAGTATCTATGTTCT
CAAAACGATAAAGGGTTGGGCGGCCGAACCATGAAAGCGGAAGAAACAGT
GTGCGCGGAAGGACAGCCCGCGGAAGCGGCCCTTTTGGGCAAAGACGTTA
TTCAAACAGCTCCATCATCGAGGAAGGGATCTAGGTTAGCTGACTCCCTC
GACGCTCGGCGGGTTCGCGGGCATATATCTGACGACGAGCAACACGCATG
CATTGGCGACAACGGCGGCGATCGTAGCGGAAAGTCGGAAGAGCGCGAGA
GAATCACCACCAGCAACATGGAGCGACGCCCCTCTTTCGAACAAGTTTTA
GCGGGAGAAGTTGTGCCCGTGACTTCAGTGAATAGCAGCCCACGGATCGA
GGGAATCGCCCAGAGTAATACGAGTTACGTCGAAGGGAGTACTCATACTT
GTAGCAGCGGGACGTCCGGCAGCTGGACTTCTAGAAGCACTGGTTCCCAT
ATTTCTGAACATAGTTCGGCTGCGTGGATTTCCCGTGGTGGGGAGGATAT
GAGTGCAGGCGGCGGGGAAACAAGCAGGCAGTCACCCGGTTCTCATTCTC
CGCACTTGACTGCGAATGTACTCGATTTACAACCTTGCAATGACGACGAA
CCACTTGTTTCTGAAGATCAAAAGGGTCCCGCTGTGAACAGCGCCAATGT
AAAACCGTCGCCGCTAGCGACGGGAACGCTCACTACCCAAGTGGCTGGCG
CACCGAGTTCCGATATTCCAGTTGGTAATCTGACCACGGAAGTGGAGGTA
GGACCGCAGGATCACCCCGGTGAGGTAGACGTCGGTGCTGAGTCGACGCC
CCTGTCCACCTCGCTGGCACCAGCCGGTCGTGGAGGCGAAGGTAAAAATT
TGGGCTCGTCTGAATCGCCACGTTGAAGGCCGGAATAAATACTTCCTGTT
TACGGTGTGCTAGATTGCGCCAGACTGGTGGCAGCCAGTAGCGCTGGCGT
GGGACCTGTATTTTCATTGGCACCAACAGCGTCCTTGGAGGCTCGTTCCT
TAAGCGATGGTTAAGGCTGCTGACACCGACAAGCAGGCGGTATACTTCGC
GGCCATCACCTCGAGCATAAAGCGGGGTATCTAATACATCTGCCCTAGTT
TCGGTGCGATACCGTGCGTCTACAGCTGTCGGGTGGTTAGGAGTAGTGAG
CTGTTGCGCTGTATCAAAGAGTAGTGGATGACTTGATATAATTCAGCTTC
GGTTTCTACGTGCGCTGTTTATACCTCATGTCTAGGTGGTCAATCGCCCG
TGTCCGTACTTCAATCGATGAAATGAAATAATCTGCCGACGTGAAGAGAT
GAGCGTAAATTTGTTCGGGTAGGGTCGATAAGGTTCGGGCGTCCGAAAAG
CTTCGCCCGCGAATGTTGCCGAGGACACACCATAATATATTTGCGTCAGA
GGGAGAAGAGGAGGAGCTGCGACTTCAGGCTCCTCGTATATCGCTTGCTT
ATTGATCGATCGAGGACGAAACGAGGCATTTCATACATCGTAATCGACCA
CGAT
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Coding sequence (CDS) from alignment at H-elongata_contig65524:822..2825+

>mRNA_H-elongata_contig65524.14135.1 ID=mRNA_H-elongata_contig65524.14135.1|Name=mRNA_H-elongata_contig65524.14135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2520bp|location=Sequence derived from alignment at H-elongata_contig65524:822..2825+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGACGGGTATCGACATCCCTCGAGCGACGACGCAGCCAGGAACGC
GAATGCCGAACCCGATGATCGTTCCCGACATCAGAGCGATGGATGTGGGG
TCCAATCTTGTCGGTCGTCCCCATCACCTTTGTCGCCTCTCAGAAAAACG
CCTCAGGGAGCTGGCATCGACGGGGTGGATACGCTGGCAACCTCCTTGTC
GCTCTCTCAGAAAGATGCGTCGGAAATGTTGCGCCGATCAGCACCAGCTC
CGCACGGTGAAGGCGAGCATGCCGAGATAGGTAGCCGAGTGCTGATGGGA
GAAGATGGGGTGAGCGCCCGGCAACGCACGCCCACACCGCGCGATATAGT
TGACACTATCACAGGCACAGAGTATCTATGTTCTCAAAACGATAAAGGGT
TGGGCGGCCGAACCATGAAAGCGGAAGAAACAGTGTGCGCGGAAGGACAG
CCCGCGGAAGCGGCCCTTTTGGGCAAAGACGTTATTCAAACAGCTCCATC
ATCGAGGAAGGGATCTAGGTTAGCTGACTCCCTCGACGCTCGGCGGGTTC
GCGGGCATATATCTGACGACGAGCAACACGCATGCATTGGCGACAACGGC
GGCGATCGTAGCGGAAAGTCGGAAGAGCGCGAGAGAATCACCACCAGCAA
CATGGAGCGACGCCCCTCTTTCGAACAAGTTTTAGCGGGAGAAGTTGTGC
CCGTGACTTCAGTGAATAGCAGCCCACGGATCGAGGGAATCGCCCAGAGT
AATACGAGTTACGTCGAAGGGAGTACTCATACTTGTAGCAGCGGGACGTC
CGGCAGCTGGACTTCTAGAAGCACTGGTTCCCATATTTCTGAACATAGTT
CGGCTGCGTGGATTTCCCGTGGTGGGGAGGATATGAGTGCAGGCGGCGGG
GAAACAAGCAGGCAGTCACCCGGTTCTCATTCTCCGCACTTGACTGCGAA
TGTACTCGATTTACAACCTTGCAATGACGACGAACCACTTGTTTCTGAAG
ATCAAAAGGGTCCCGCTGTGAACAGCGCCAATGTAAAACCGTCGCCGCTA
GCGACGGGAACGCTCACTACCCAAGTGGCTGGCGCACCGAGTTCCGATAT
TCCAGTTGGTAATCTGACCACGGAAGTGGAGGTAGGACCGCAGGATCACC
CCGGTGAGGTAGACGTCGGTGCTGAGTCGACGCCCCTGTCCACCTCGCTG
GCACCAGCCGGTCGTGGAGGCGAAGGTAAAAATTTGGGCTCGTCTGAATC
GCCACGTTGAATGTCCGACGGGTATCGACATCCCTCGAGCGACGACGCAG
CCAGGAACGCGAATGCCGAACCCGATGATCGTTCCCGACATCAGAGCGAT
GGATGTGGGGTCCAATCTTGTCGGTCGTCCCCATCACCTTTGTCGCCTCT
CAGAAAAACGCCTCAGGGAGCTGGCATCGACGGGGTGGATACGCTGGCAA
CCTCCTTGTCGCTCTCTCAGAAAGATGCGTCGGAAATGTTGCGCCGATCA
GCACCAGCTCCGCACGGTGAAGGCGAGCATGCCGAGATAGGTAGCCGAGT
GCTGATGGGAGAAGATGGGGTGAGCGCCCGGCAACGCACGCCCACACCGC
GCGATATAGTTGACACTATCACAGGCACAGAGTATCTATGTTCTCAAAAC
GATAAAGGGTTGGGCGGCCGAACCATGAAAGCGGAAGAAACAGTGTGCGC
GGAAGGACAGCCCGCGGAAGCGGCCCTTTTGGGCAAAGACGTTATTCAAA
CAGCTCCATCATCGAGGAAGGGATCTAGGTTAGCTGACTCCCTCGACGCT
CGGCGGGTTCGCGGGCATATATCTGACGACGAGCAACACGCATGCATTGG
CGACAACGGCGGCGATCGTAGCGGAAAGTCGGAAGAGCGCGAGAGAATCA
CCACCAGCAACATGGAGCGACGCCCCTCTTTCGAACAAGTTTTAGCGGGA
GAAGTTGTGCCCGTGACTTCAGTGAATAGCAGCCCACGGATCGAGGGAAT
CGCCCAGAGTAATACGAGTTACGTCGAAGGGAGTACTCATACTTGTAGCA
GCGGGACGTCCGGCAGCTGGACTTCTAGAAGCACTGGTTCCCATATTTCT
GAACATAGTTCGGCTGCGTGGATTTCCCGTGGTGGGGAGGATATGAGTGC
AGGCGGCGGGGAAACAAGCAGGCAGTCACCCGGTTCTCATTCTCCGCACT
TGACTGCGAATGTACTCGATTTACAACCTTGCAATGACGACGAACCACTT
GTTTCTGAAGATCAAAAGGGTCCCGCTGTGAACAGCGCCAATGTAAAACC
GTCGCCGCTAGCGACGGGAACGCTCACTACCCAAGTGGCTGGCGCACCGA
GTTCCGATATTCCAGTTGGTAATCTGACCACGGAAGTGGAGGTAGGACCG
CAGGATCACCCCGGTGAGGTAGACGTCGGTGCTGAGTCGACGCCCCTGTC
CACCTCGCTGGCACCAGCCGGTCGTGGAGGCGAAGGTAAAAATTTGGGCT
CGTCTGAATCGCCACGTTGA
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