mRNA_H-elongata_contig65524.14134.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65524.14134.1
Unique NamemRNA_H-elongata_contig65524.14134.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65524.14134.1 vs. uniprot
Match: A0A6H5JZ68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ68_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.690e-25
Identity = 56/87 (64.37%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 VSQLRQEVSLLRRDVDHIRSSMQQMHQEVGSAVLLLSRFIGLRWDTSEAVRLADERAASTSEAVNRLSKNVDVLEQRLAVSEESKPG 261
            V QLRQEV+ LRRDVD IRS+MQ MH+EVGSAVLLLSRF+GL+W+T E V L +++ A  SEAV+RL+ NV  L+QRL ++EE+K G
Sbjct:   12 VDQLRQEVATLRRDVDTIRSTMQDMHREVGSAVLLLSRFVGLQWNTDEVVGLVEDKTALASEAVDRLADNVGTLQQRLTIAEETKLG 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65524.14134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZ68_9PHAE1.690e-2564.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65524contigH-elongata_contig65524:289..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004680.1
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.0919106-CDS-H-elongata_contig65524:288..3721622931042.0919106-CDS-H-elongata_contig65524:288..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 289..372 +
1691679674.089991-CDS-H-elongata_contig65524:288..3721691679674.089991-CDS-H-elongata_contig65524:288..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 289..372 +
1622931042.1641722-CDS-H-elongata_contig65524:631..8081622931042.1641722-CDS-H-elongata_contig65524:631..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 632..808 +
1691679674.1008387-CDS-H-elongata_contig65524:631..8081691679674.1008387-CDS-H-elongata_contig65524:631..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65524 632..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65524.14134.1prot_H-elongata_contig65524.14134.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65524 289..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65524.14134.1

>prot_H-elongata_contig65524.14134.1 ID=prot_H-elongata_contig65524.14134.1|Name=mRNA_H-elongata_contig65524.14134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
VSQLRQEVSLLRRDVDHIRSSMQQMHQEVGSAVLLLSRFIGLRWDTSEAV
RLADERAASTSEAVNRLSKNVDVLEQRLAVSEESKPG
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mRNA from alignment at H-elongata_contig65524:289..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65524.14134.1 ID=mRNA_H-elongata_contig65524.14134.1|Name=mRNA_H-elongata_contig65524.14134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=520bp|location=Sequence derived from alignment at H-elongata_contig65524:289..808+ (Himanthalia elongata Himel1 dioecious)
GTGAGCCAGCTGCGTCAAGAAGTGTCTCTGCTCCGGAGGGACGTCGACCA
CATTCGATCTAGCATGCAACAGATGCATCAAGAGGTGGGGTTTCTCTCAG
CCACTGCTCTTCCAGCCGCACCCGTTTTCTTTTGATTCCTCTTAAAACAT
GCCGGTATAAATCAAAAGTAAACCTGTTTTAAGTTACACGCGCATCATGA
GCCATATCCTGTTGGTTTCAGCTACACGCGCATAGTGCGTATGCAACAGT
AACAGTAACGATTATGGTACCATGCAACAACATGGGCGATTATCCGCCCG
TCCATCCGCCGCCTCTGGAAATGAAATATATTGACAACTCCAGGTTGGAT
CGGCAGTCCTTTTGCTCAGCCGGTTTATCGGACTGCGTTGGGACACGAGC
GAAGCAGTGCGTCTCGCAGATGAACGAGCCGCCTCGACGAGCGAGGCGGT
GAACCGACTCTCCAAGAACGTCGACGTACTCGAGCAGCGTCTTGCAGTAT
CGGAAGAATCAAAACCCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig65524:289..808+

>mRNA_H-elongata_contig65524.14134.1 ID=mRNA_H-elongata_contig65524.14134.1|Name=mRNA_H-elongata_contig65524.14134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig65524:289..808+ (Himanthalia elongata Himel1 dioecious)
GTGAGCCAGCTGCGTCAAGAAGTGTCTCTGCTCCGGAGGGACGTCGACCA
CATTCGATCTAGCATGCAACAGATGCATCAAGAGGTGAGCCAGCTGCGTC
AAGAAGTGTCTCTGCTCCGGAGGGACGTCGACCACATTCGATCTAGCATG
CAACAGATGCATCAAGAGGTTGGATCGGCAGTCCTTTTGCTCAGCCGGTT
TATCGGACTGCGTTGGGACACGAGCGAAGCAGTGCGTCTCGCAGATGAAC
GAGCCGCCTCGACGAGCGAGGCGGTGAACCGACTCTCCAAGAACGTCGAC
GTACTCGAGCAGCGTCTTGCAGTATCGGAAGAATCAAAACCCGGCGTTGG
ATCGGCAGTCCTTTTGCTCAGCCGGTTTATCGGACTGCGTTGGGACACGA
GCGAAGCAGTGCGTCTCGCAGATGAACGAGCCGCCTCGACGAGCGAGGCG
GTGAACCGACTCTCCAAGAACGTCGACGTACTCGAGCAGCGTCTTGCAGT
ATCGGAAGAATCAAAACCCGGC
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