mRNA_H-elongata_contig6552.14133.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A6H5JVV9_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE) HSP 1 Score: 167 bits (424), Expect = 9.670e-46 Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 2
Query: 164 DTNGWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRRSTKASPARV-VPNSPGS 439
D GWT TGRGFEVRDHARLS+EVLGRFFKQDKFSSFQRQLNLYGFRKITKGSE+GSYQHPHFRRGERTTLLTIRRSTKASPARV VP SP S
Sbjct: 76 DIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPARVAVPVSPAS 168
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.470e-21 Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2
Query: 158 SLDTNGWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
S D GW+ +GR F +R+ ++L ++FK DKFSSFQRQLNLYGFRKI KG+E+G Y H +FRRG L +RR
Sbjct: 16 SADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 93
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A835Z533_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z533_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.790e-20 Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 2
Query: 176 WTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
WT TGR F ++D R +VL FK DKFSSFQRQLNLYGFRKI +G EAG Y H F+RG L +RR
Sbjct: 20 WTSTGRAFGIQDMPRFRTQVLPTHFKHDKFSSFQRQLNLYGFRKIVRGKEAGGYMHKDFQRGRADLLPHVRR 91
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK) HSP 1 Score: 94.7 bits (234), Expect = 5.110e-20 Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 2
Query: 80 YLLSGQLG*TWEHTPSLFLRKPRFRVSL---DTNGWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRRSTKAS 406
Y +GQ G P F RK + + D W G F VRD R S E+L ++F+ KF+SFQRQLNLYGFRKIT+GS+AGSY H +FR+G+ L +RRS +S
Sbjct: 3 YPRTGQRG-----APQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 8.140e-19 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query: 173 GWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
GW+ +G+ F + D + E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+EAG Y HP F RG+ L +RR
Sbjct: 69 GWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 141
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 8.940e-19 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query: 173 GWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
GW+ +G+ F + D + E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+EAG Y HP F RG+ L +RR
Sbjct: 46 GWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 118
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A835YN41_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN41_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.060e-18 Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 2
Query: 77 GYLLSGQLG*TWEHTPSLFLRKPRFRVSLDTNG------WTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
GY GQL P+ F P +S+ N W+ TGR F +R+ A ++L ++FK DKFSSFQRQLNLYGFRKI KG E+G Y H +F+RG L +RR
Sbjct: 6 GYTDQGQLRPLTATAPAGF---PYVLISILENESPEIITWSSTGRAFGIRNMAAFKTKILPQYFKHDKFSSFQRQLNLYGFRKIVKGRESGCYIHCYFQRGHPELLKQVRR 113
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A6H5JIP5_9PHAE (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP5_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 7.530e-18 Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 2
Query: 158 SLDTNGWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRR 391
S D WT +G+ F+V D+ R S E+L ++F+ +KFSSF+RQLNLYG+RK+ KG +AG+Y HP F+RG L +++
Sbjct: 65 SSDIITWTKSGQAFQVVDYTRFSEEILLKYFRHNKFSSFRRQLNLYGYRKVIKGPDAGAYMHPFFQRGRPELLGEVKK 142
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A7S2V3K7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3K7_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 9.820e-18 Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2
Query: 173 GWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRRSTKASPAR 415
GW+P+G GF +++ ++L ++F+ +SSFQRQLNLYGFRKITKG E G+Y H FRRG LL+I+R+ + S A+
Sbjct: 6 GWSPSGEGFFLKNPKIFIEKILQKYFRHQNYSSFQRQLNLYGFRKITKGPEIGAYSHDSFRRGHPDLLLSIKRAPQWSAAK 86
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Match: A0A835ZDM3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM3_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.240e-17 Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query: 164 DTNGWTPTGRGFEVRDHARLSAEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSEAGSYQHPHFRRGERTTLLTIRRSTKA 403
D W P+G F +RD R S EVL FK +K SSFQRQLNLYGFRKI++G +AG+Y H HF R + + S++A
Sbjct: 50 DIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKISRGPDAGAYAHEHFLRDRPEDIQVMAMSSRA 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6552.14133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6552.14133.1 >prot_H-elongata_contig6552.14133.1 ID=prot_H-elongata_contig6552.14133.1|Name=mRNA_H-elongata_contig6552.14133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp PFQSHGNVQLQYSTPRKETLDSKVCRVPSQRTIGLNLGTHTLTLFKEAQVback to top mRNA from alignment at H-elongata_contig6552:1885..4705+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6552.14133.1 ID=mRNA_H-elongata_contig6552.14133.1|Name=mRNA_H-elongata_contig6552.14133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2821bp|location=Sequence derived from alignment at H-elongata_contig6552:1885..4705+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6552:1885..4705+ >mRNA_H-elongata_contig6552.14133.1 ID=mRNA_H-elongata_contig6552.14133.1|Name=mRNA_H-elongata_contig6552.14133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig6552:1885..4705+ (Himanthalia elongata Himel1 dioecious)back to top |