mRNA_H-elongata_contig6547.14129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6547.14129.1
Unique NamemRNA_H-elongata_contig6547.14129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.870e-28
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  112 PPSVVIRFNRYTGLACSGDPRYEGCVPIAAIETSWSATGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            P  VV++F  Y+G   S   RY  CVPI+ ++T+W     +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:  144 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 250
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.650e-27
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  112 PPSVVIRFNRYTGLACSGDPRYEGCVPIAAIETSWSATGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            P  VV++F  Y+G   S   RY  CVPI+ ++T+W     +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:  318 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 424
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.170e-27
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  112 PPSVVIRFNRYTGLACSGDPRYEGCVPIAAIETSWSATGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            P  VV++F  Y+G   S   RY  CVPI+ ++T+W     +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:   35 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 141
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.610e-27
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  112 PPSVVIRFNRYTGLACSGDPRYEGCVPIAAIETSWSATGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            P  VV++F  Y+G   S   RY  CVPI+ ++T+W     +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct: 1449 PLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ----DGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 1555
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.600e-20
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  226 GDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            G++G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:    7 GEDGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 79
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.560e-20
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:  118 SVVIRFNRYTGLACSGDPRYEGCVPIAAIETSWSATGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            S+  R   +  ++    P  + C      +  WS    +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:   36 SMFCRAVTWRSISARFPPSEKDCRQACGGDR-WSTGRKDGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 143
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.130e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:  223 TGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            +G++G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:    4 SGEDGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.310e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:  223 TGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            +G++G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:    4 SGEDGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.250e-18
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:  223 TGDEGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            +G++G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:    4 SGEDGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.790e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:  232 EGK*ESREELPLALCWAAIIMHKSQGQTVDKAVVGLGMSEATAGLTFVCLRRAKRLVDHLVKPVPFDMLSKL 447
            +G  + R +LPL LCWA I MHKSQGQT+ KAV+ LG  EA  GLTFVCL RAKRLVD +V+P+ FD +  L
Sbjct:    4 DGGTQVRTQLPLRLCWA-ITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNL 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6547.14129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE1.870e-2852.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE2.650e-2752.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE3.170e-2752.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE9.610e-2752.68ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5KSF1_9PHAE6.600e-2060.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE8.560e-2045.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE1.130e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE2.310e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE2.250e-1860.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K214_9PHAE8.790e-1861.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6547contigH-elongata_contig6547:6623..7895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size665
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6547.14129.1prot_H-elongata_contig6547.14129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6547 6743..7075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.393955-UTR-H-elongata_contig6547:6622..67421622931041.393955-UTR-H-elongata_contig6547:6622..6742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 6623..6742 -
1691679673.7456262-UTR-H-elongata_contig6547:6622..67421691679673.7456262-UTR-H-elongata_contig6547:6622..6742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 6623..6742 -
1622931041.4350476-UTR-H-elongata_contig6547:7075..71941622931041.4350476-UTR-H-elongata_contig6547:7075..7194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7076..7194 -
1691679673.777367-UTR-H-elongata_contig6547:7075..71941691679673.777367-UTR-H-elongata_contig6547:7075..7194Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7076..7194 -
1622931041.4535503-UTR-H-elongata_contig6547:7376..74071622931041.4535503-UTR-H-elongata_contig6547:7376..7407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7377..7407 -
1691679673.7952821-UTR-H-elongata_contig6547:7376..74071691679673.7952821-UTR-H-elongata_contig6547:7376..7407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7377..7407 -
1622931041.4719682-UTR-H-elongata_contig6547:7833..78951622931041.4719682-UTR-H-elongata_contig6547:7833..7895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7834..7895 -
1691679673.8091567-UTR-H-elongata_contig6547:7833..78951691679673.8091567-UTR-H-elongata_contig6547:7833..7895Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6547 7834..7895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.4173286-CDS-H-elongata_contig6547:6742..70751622931041.4173286-CDS-H-elongata_contig6547:6742..7075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6547 6743..7075 -
1691679673.7555346-CDS-H-elongata_contig6547:6742..70751691679673.7555346-CDS-H-elongata_contig6547:6742..7075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6547 6743..7075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6547.14129.1

>prot_H-elongata_contig6547.14129.1 ID=prot_H-elongata_contig6547.14129.1|Name=mRNA_H-elongata_contig6547.14129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MECHGGRGQVGVARGATPRTLLGGDYYAQEPGTDGGQGSGRPGDVRSNRR
ADLRLPQTGQATGRPLSEACAFRHAFQAREKTYLRLRLEEKARLKALVVK
KHRRHGVGIP*
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mRNA from alignment at H-elongata_contig6547:6623..7895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6547.14129.1 ID=mRNA_H-elongata_contig6547.14129.1|Name=mRNA_H-elongata_contig6547.14129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-elongata_contig6547:6623..7895- (Himanthalia elongata Himel1 dioecious)
TGACAGAGAGCGGCAGCAACAGCTGCGACTTCAGAAACAACAGCAGGCCG
CGCGGGCTCTAGGTAACTACCCAACGTCCGCTTCTACTGCTTTGTGTTGT
TGTTTTTCTATGGGATTGTTCATGTGTTGAGGTGTGGTATGGGCCTTGTG
CGGTGGTAAGAATATTAACCGAATATAATTAATACTGGTATTGAGTATAC
TCTACGGTACGACAAAATAAGGCCACAAACGCCGACATACGACGCCTACT
CCCGCTAAAGAGCTTAAATCTATACAGCAACTTGTCTATACAATGATATC
AACCTTGCTTTTTTATTTTGCTGTGTATTGCGTGGCTTCTGTACACTTAT
GTTGTGTGGATTATACCATGGTTCGCGCTTTGGGTGAACTGTTGTAGATG
TTGTCGCAACTACGATGTGGCCATGTTTGACTCTCTCTCTCCGCACGTGT
GTCCTGAAACTTCTCCCTTGCCAAACGACATCTTCCAGCCTACACCGCGG
CGGCCGCTTCTGCAGCACGGTGAGCTCAGTAAGAAAAAGGAGCCCACGAT
GCAGGTAGCGACACATCACCGAAGATGTTTCATGATGTCCTGCACGAGTG
ATATTGGCGGCCTACTGCTGTGGTATGCATCACTGCTTCCCTCATTGTTA
GACCAACCCCTAACACCATGTCCCTTTCTTGCTATAATCTACTCCCACCA
GCGCAACTGTCGCAAAGGCCCCCCATCCGTGGTCATCAGGTTCAACAGGT
ACACCGGCCTAGCGTGTTCTGGCGACCCGCGATATGAGGGGTGTGTCCCC
ATCGCTGCCATAGAGACGTCATGGAGTGCCACGGGGGACGAGGGCAAGTA
GGAGTCGCGAGAGGAGCTACCCCTCGCACTCTGCTGGGCGGCGATTATTA
TGCACAAGAGCCAGGGACAGACGGTGGACAAGGCAGTGGTCGGCCTGGGG
ATGTCCGAAGCAACCGCAGGGCTGACCTTCGTTTGCCTCAGACGGGCCAA
GCGACTGGTAGACCACTTAGTGAAGCCTGTGCCTTTCGACATGCTTTCCA
AGCTAGAGAAAAAACATATTTGAGGCTTAGACTTGAAGAGAAAGCGCGCC
TCAAAGCGCTGGTAGTTAAGAAACATCGACGTCACGGGGTGGGAATTCCG
TAGTTCGTCGGTGTTGATAGGGTTTAAAGGGTTTTGCTGTTGGATGAGGA
GGGGTTATATTATCGACCACACGTTTTTTGTTTTTGTTTTTTAAACTACA
CATTGAAGGGATCATCATGTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig6547:6623..7895-

>mRNA_H-elongata_contig6547.14129.1 ID=mRNA_H-elongata_contig6547.14129.1|Name=mRNA_H-elongata_contig6547.14129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig6547:6623..7895- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGCCACGGGGGACGAGGGCAAGTAGGAGTCGCGAGAGGAGCTAC
CCCTCGCACTCTGCTGGGCGGCGATTATTATGCACAAGAGCCAGGGACAG
ACGGTGGACAAGGCAGTGGTCGGCCTGGGGATGTCCGAAGCAACCGCAGG
GCTGACCTTCGTTTGCCTCAGACGGGCCAAGCGACTGGTAGACCACTTAG
TGAAGCCTGTGCCTTTCGACATGCTTTCCAAGCTAGAGAAAAAACATATT
TGAGGCTTAGACTTGAAGAGAAAGCGCGCCTCAAAGCGCTGGTAGTTAAG
AAACATCGACGTCACGGGGTGGGAATTCCGTAGATGGAGTGCCACGGGGG
ACGAGGGCAAGTAGGAGTCGCGAGAGGAGCTACCCCTCGCACTCTGCTGG
GCGGCGATTATTATGCACAAGAGCCAGGGACAGACGGTGGACAAGGCAGT
GGTCGGCCTGGGGATGTCCGAAGCAACCGCAGGGCTGACCTTCGTTTGCC
TCAGACGGGCCAAGCGACTGGTAGACCACTTAGTGAAGCCTGTGCCTTTC
GACATGCTTTCCAAGCTAGAGAAAAAACATATTTGAGGCTTAGACTTGAA
GAGAAAGCGCGCCTCAAAGCGCTGGTAGTTAAGAAACATCGACGTCACGG
GGTGGGAATTCCGTAG
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