mRNA_H-elongata_contig65426.14124.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI) HSP 1 Score: 210 bits (534), Expect = 1.630e-64 Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 10 AARQKHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDER 375
A +K+AKTLADN IDH+SCVSSMRLLSLCSLATEHEEIPYQVVADTLQV GDD+VE+WVL+AI+TGLMEAKMDQMQRVVVIRRCTNRVFGP+QWKTLQ KLGTWS NV+ LL+ I+KS+ER
Sbjct: 275 AFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNER 396
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA) HSP 1 Score: 136 bits (342), Expect = 7.860e-36 Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 1
Query: 37 LADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 372
L + I H+ CV +MRLLSLCSL +E +E+PY V+++TLQV +D VEEWVL+A + GLMEA+MDQ+++VV+I RCT RVFG QW +LQ KLG W NV LL TI++S+E
Sbjct: 286 LEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDPED-VEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S4S2I4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S2I4_9STRA) HSP 1 Score: 127 bits (318), Expect = 6.070e-35 Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 25 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 372
++ TL + + ++ CV MRLLSLCSLA EHEEIPY +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC R FG QWK LQT+L W NV+ +L +K+S +
Sbjct: 35 NSPTLTEYGLSNDDCVRYMRLLSLCSLAAEHEEIPYGAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMEQWKMLQTRLNDWKRNVKGVLDGLKQSQQ 149
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2MXL1_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXL1_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.650e-32 Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 25 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 372
++ TL + + ++ CV +MRLLSLCSLA EHEEIPY +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC R FG QWK LQ +L W NV+ +L +K+S +
Sbjct: 302 NSPTLTEYGLSNDDCVRNMRLLSLCSLAAEHEEIPYSAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMDQWKVLQVRLNDWKKNVKGVLDGLKQSQQ 416
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A6S8Z843_9STRA (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Z843_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.960e-32 Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 25 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 372
++ TL + + ++ CV MRLLSLCSLA EHEEIPY +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC R FG QWK LQT+L W NV+ +L +K+S +
Sbjct: 291 NSPTLTEYGLSNDDCVRYMRLLSLCSLAAEHEEIPYGAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMEQWKMLQTRLNDWKRNVKGVLDGLKQSQQ 405
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.940e-31 Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 34 TLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKS 366
T+ ++HE C+++MRLLSLCSLATEHEEIPY +A+TL+V ++ VE WV+ LM+AKMDQ+Q+VV+I RCT+RVF SQWK L +L TW NV +L TI+++
Sbjct: 269 TMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPLEE-VEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2UD50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD50_9STRA) HSP 1 Score: 115 bits (287), Expect = 5.520e-28 Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 31 KTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTN 333
K L N ++ E CV MRLLSLCSLA EHEEIPY + TL+V+ ++ VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC R FG +WK+LQT+L TW N
Sbjct: 304 KVLEKNGLNPEDCVRYMRLLSLCSLAAEHEEIPYAAIVSTLKVQPEE-VESWVITAVSSGLLLAKMDQLQQVVMVERCVVRRFGIEEWKSLQTRLHTWKKN 403
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S1E674_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E674_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.480e-27 Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 1
Query: 22 KHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSD 369
K + L+ +++ E C +MR+LSLCSLATE EE+PY +VA TL V +++VE WV+ A+ +GL+ AKMDQ+++ +++ R R F QWK LQ++L W NV +L +K+SD
Sbjct: 56 KKDEVLSKYSLNEEECTRNMRILSLCSLATEFEEVPYNLVATTLDVS-ENEVESWVIAAVSSGLLSAKMDQIEQRIMVERSVVRKFDMIQWKALQSQLQIWKHNVNGILEALKQSD 170
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A067FZM4_CITSI (Eukaryotic translation initiation factor 3 subunit M n=5 Tax=Citrus TaxID=2706 RepID=A0A067FZM4_CITSI) HSP 1 Score: 112 bits (280), Expect = 6.350e-27 Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 1
Query: 58 HESCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 372
HE C++ MRL+SL L + E +IPY ++ DTLQ+ D+ VE+WV++A LM+ KMDQM +VV++RRCT RVFG QW+TL+TKL TW NV +++TI+ +++
Sbjct: 292 HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDE-VEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNK 396
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: K0RLU6_THAOC (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RLU6_THAOC) HSP 1 Score: 112 bits (280), Expect = 8.330e-27 Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 49 NIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKS 366
N+ + C +M LLSL SLA EHEEIPY +A TL V+ +DDVE+WV+ A+ +GLMEAKMDQ+ +VV++ RC R FG +W L+ +L + TNV+ +L ++KS
Sbjct: 328 NLSEDDCTKNMSLLSLVSLAGEHEEIPYSEIASTLSVE-EDDVEKWVIAAVASGLMEAKMDQLSKVVIVERCAVRQFGTKEWSALKIRLEKYKTNVKGVLDALEKS 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65426.14124.1 >prot_H-elongata_contig65426.14124.1 ID=prot_H-elongata_contig65426.14124.1|Name=mRNA_H-elongata_contig65426.14124.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp MVCAARQKHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTback to top mRNA from alignment at H-elongata_contig65426:225..1389+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65426.14124.1 ID=mRNA_H-elongata_contig65426.14124.1|Name=mRNA_H-elongata_contig65426.14124.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1165bp|location=Sequence derived from alignment at H-elongata_contig65426:225..1389+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65426:225..1389+ >mRNA_H-elongata_contig65426.14124.1 ID=mRNA_H-elongata_contig65426.14124.1|Name=mRNA_H-elongata_contig65426.14124.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig65426:225..1389+ (Himanthalia elongata Himel1 dioecious)back to top |