mRNA_H-elongata_contig65299.14118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65299.14118.1
Unique NamemRNA_H-elongata_contig65299.14118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: D7FTM6_ECTSI (Putative fusion of putative sugar/xylulosekinase and ribulose-phosphate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.360e-32
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMF 246
            +QTHADVSNVP+++TRE EA +LGSAILAAVG G FPDI SAAR MVHVE TV PNPEAHA Y+ +LERYRAVYPALKP+F
Sbjct:  113 LQTHADVSNVPMKVTREREACVLGSAILAAVGGGLFPDIPSAARAMVHVEGTVMPNPEAHAEYKRVLERYRAVYPALKPLF 193          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.710e-32
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMF 246
            +QTHADVSNVP+++TRE EA LLGSAILAAVG G FPDI SAAR MVHVE TV PNPEAHA+Y+ +LERYRAVYPALKP+F
Sbjct:  421 LQTHADVSNVPMKVTREREACLLGSAILAAVGGGLFPDIPSAARAMVHVEGTVMPNPEAHAKYKRVLERYRAVYPALKPVF 501          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A6G8PTX9_9ACTN (Xylulose kinase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A6G8PTX9_9ACTN)

HSP 1 Score: 104 bits (260), Expect = 2.220e-24
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH 264
            +Q HADVSN+P+ + RE E  +LGSA+LAAVGAG +P+++ AA +MVH ERT+EPNPEAH +Y+  ++RY   YP ++P+ H  ARH
Sbjct:  426 MQMHADVSNIPVSVPRESEGPVLGSAMLAAVGAGVYPNVQEAADNMVHTERTIEPNPEAHEQYKFYVDRYVETYPQMRPLMHELARH 512          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A1D1ZPV9_AUXPR (Glycerol kinase n=5 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZPV9_AUXPR)

HSP 1 Score: 100 bits (248), Expect = 9.800e-23
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKA 258
            +Q HAD+SN+PLR+T   EA  LGSAILAAV AG +P I  A R MVH+ RTV+PNP  H  YRE    Y+ +YPAL+P FH+ A
Sbjct:  415 LQLHADISNIPLRLTEVAEAPALGSAILAAVAAGWYPSIPDAVRGMVHIARTVQPNPAVHEAYRESYAAYKELYPALRPTFHAAA 499          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A6G8Q0V9_9ACTN (Xylulose kinase n=1 Tax=Rubrobacter marinus TaxID=2653852 RepID=A0A6G8Q0V9_9ACTN)

HSP 1 Score: 95.9 bits (237), Expect = 3.260e-21
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH 264
            +Q HADVSNVP+  TRE E  +LGSA+LAAVGAG +PD+++AAR+MVH ERT+EP+   H  Y+  ++RY   YP ++   H   RH
Sbjct:  426 MQMHADVSNVPVSFTRESEGPVLGSAMLAAVGAGVYPDVQTAARNMVHTERTIEPDAARHEEYQFYVDRYVETYPQMRESMHKTVRH 512          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A835SXP3_CHLIN (FGGY_C domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXP3_CHLIN)

HSP 1 Score: 95.9 bits (237), Expect = 3.690e-21
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFH 249
            +Q HAD+S VPLR+TRE EA +LG AILAAV AG +PD+  A + MVHVER V P+P A A Y   L RY A+YPAL P+FH
Sbjct:  315 LQIHADMSGVPLRLTRECEAPMLGCAILAAVAAGWYPDVPGAVQHMVHVERQVAPDPAAVAAYAAPLARYAALYPALAPLFH 396          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A2P6TT72_CHLSO (Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO)

HSP 1 Score: 95.5 bits (236), Expect = 5.060e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKA 258
            +QTHADVSNVP  +T+  +A  LG AILAAV AG FPD+ +A   MVH +R V+P+P+ HA Y+   + Y+A+YPALKP FH+ A
Sbjct:  417 LQTHADVSNVPFILTKVSDAPALGCAILAAVAAGLFPDVPAACAAMVHQDRVVQPDPQRHAEYQRHFQAYKALYPALKPGFHTAA 501          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A0A6J4QM13_9ACTN (Carbohydrate kinase, FGGY family (Fragment) n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4QM13_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 5.120e-21
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH 264
            ++ HADVSNVP+  T+  E  +LGSA+LAAVGAG +PDI++AA +MVH   T+EP+PE H  YR  +ERY   YP +K + H   RH
Sbjct:  274 MRMHADVSNVPIAFTKVSEGPVLGSAMLAAVGAGIYPDIQTAAANMVHTADTIEPDPERHEEYRFYVERYLEAYPQMKELMHKTVRH 360          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: UPI001F08CE46 (FGGY-family carbohydrate kinase n=1 Tax=Rubrobacter indicoceani TaxID=2051957 RepID=UPI001F08CE46)

HSP 1 Score: 95.1 bits (235), Expect = 6.030e-21
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH 264
            +Q HADVSN+P+ +T+  E  +LG+A+LA+VGAG + D++ AA++MVH E  +EPNPEAH +YR  L+RY   YP +K + H   RH
Sbjct:  426 MQMHADVSNLPIALTKVSEGPVLGAAMLASVGAGIYKDVQEAAKNMVHTENHIEPNPEAHEKYRFYLDRYVETYPQMKDLMHQMTRH 512          
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Match: A8JHF0_CHLRE (Glycerol kinase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JHF0_CHLRE)

HSP 1 Score: 95.1 bits (235), Expect = 6.070e-21
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 IQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHVERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH 264
            +Q HAD+S VPLR+TRE EA +LG AILAAV AG + D+  A + MVHVER VEP+P A A Y   L RY A+YPAL P+FH    H
Sbjct:  433 LQIHADMSGVPLRLTRECEAPMLGCAILAAVAAGWYADVPGAVQHMVHVERQVEPDPAAVAAYAVPLARYAALYPALAPLFHGDHDH 519          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65299.14118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM6_ECTSI5.360e-3277.78Putative fusion of putative sugar/xylulosekinase a... [more]
A0A6H5K691_9PHAE5.710e-3279.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G8PTX9_9ACTN2.220e-2455.17Xylulose kinase n=2 Tax=Actinobacteria TaxID=20117... [more]
A0A1D1ZPV9_AUXPR9.800e-2357.65Glycerol kinase n=5 Tax=Auxenochlorella prototheco... [more]
A0A6G8Q0V9_9ACTN3.260e-2152.87Xylulose kinase n=1 Tax=Rubrobacter marinus TaxID=... [more]
A0A835SXP3_CHLIN3.690e-2160.98FGGY_C domain-containing protein n=1 Tax=Chlamydom... [more]
A0A2P6TT72_CHLSO5.060e-2155.29Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]
A0A6J4QM13_9ACTN5.120e-2152.87Carbohydrate kinase, FGGY family (Fragment) n=1 Ta... [more]
UPI001F08CE466.030e-2150.57FGGY-family carbohydrate kinase n=1 Tax=Rubrobacte... [more]
A8JHF0_CHLRE6.070e-2158.62Glycerol kinase (Fragment) n=1 Tax=Chlamydomonas r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65299contigH-elongata_contig65299:2474..3282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.8e-28
Seed eggNOG ortholog2880.D7FTM6
Preferred nameXK-RPE
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
EggNOG OGsCOG0036@1,COG0554@1,KOG2517@2759,KOG3111@2759
Ec32 ortholog descriptionCarbohydrate kinase, FGGY, N-terminal
Ec32 orthologEc-06_008860.1
EC5.1.3.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.3099513-CDS-H-elongata_contig65299:2473..26351622931040.3099513-CDS-H-elongata_contig65299:2473..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65299 2474..2635 +
1691679673.3113415-CDS-H-elongata_contig65299:2473..26351691679673.3113415-CDS-H-elongata_contig65299:2473..2635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65299 2474..2635 +
1622931040.3371913-CDS-H-elongata_contig65299:3180..32821622931040.3371913-CDS-H-elongata_contig65299:3180..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65299 3181..3282 +
1691679673.3292556-CDS-H-elongata_contig65299:3180..32821691679673.3292556-CDS-H-elongata_contig65299:3180..3282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65299 3181..3282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65299.14118.1prot_H-elongata_contig65299.14118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65299 2474..3282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65299.14118.1

>prot_H-elongata_contig65299.14118.1 ID=prot_H-elongata_contig65299.14118.1|Name=mRNA_H-elongata_contig65299.14118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MIQTHADVSNVPLRITREPEASLLGSAILAAVGAGQFPDIESAARDMVHV
ERTVEPNPEAHARYRELLERYRAVYPALKPMFHSKARH
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mRNA from alignment at H-elongata_contig65299:2474..3282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65299.14118.1 ID=mRNA_H-elongata_contig65299.14118.1|Name=mRNA_H-elongata_contig65299.14118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig65299:2474..3282+ (Himanthalia elongata Himel1 dioecious)
ATGATACAGACGCACGCCGACGTGAGCAACGTGCCCCTGAGGATCACCAG AGAACCAGAGGCATCTTTGTTGGGTTCGGCCATCCTCGCCGCCGTGGGGG CGGGGCAGTTTCCGGACATTGAGTCGGCTGCTCGTGACATGGTCCACGTC GAGAGGACGGTGGTGAGGATGATCATGCCCCCCTCCCCCCACCCTCTATA TACACCCTACTCAATGATGTCGCGCTCCCCTGAATATCCTTACTGTCTGT ATATTTTTGAGATTGTCTTCCTCAAATGGCTCTTTTTTTTCAGTCGAGGA AGGAGGGGATTGGTTGAAATCTGGAGAAGTGTGTCCTTGAAGGTGGGCGG AAAAAACCCAGGGCTGGTCTTTGTAAATATGTATGCACATTCTTTTTAGT ATTAGCTTTTATTGCTGCTATTTTGGTTGAGTTTTTTTTACGTCAAATAC TTTTTCGGTGGAGTTTTATTTTTATTTTATATTTGTGTGTTTTTTTCAGC AGTAGCATCTACTTTTATACCTATATTGTTCATTTTTCTCCGGTTGTCTC GCGATAAAAAAGCACATGCCGTGCTTAGTCGCCAAAATTACAAATATCGT TTTCACTTAAGCTGAGTGGCGCGAGACGAAAACAAGAACGCGAACAAGCC CCCCCCCCGTTCTTACGAAACCCGCGTTATCTGTGCAAAACCCCACGATT CGGTTAGGAGCCAAATCCGGAGGCACACGCGCGGTACAGAGAGCTGCTGG AGCGGTACAGGGCCGTGTATCCTGCTCTGAAGCCGATGTTCCATAGCAAG GCAAGACAC
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Coding sequence (CDS) from alignment at H-elongata_contig65299:2474..3282+

>mRNA_H-elongata_contig65299.14118.1 ID=mRNA_H-elongata_contig65299.14118.1|Name=mRNA_H-elongata_contig65299.14118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig65299:2474..3282+ (Himanthalia elongata Himel1 dioecious)
ATGATACAGACGCACGCCGACGTGAGCAACGTGCCCCTGAGGATCACCAG
AGAACCAGAGGCATCTTTGTTGGGTTCGGCCATCCTCGCCGCCGTGGGGG
CGGGGCAGTTTCCGGACATTGAGTCGGCTGCTCGTGACATGGTCCACGTC
GAGAGGACGGTGATGATACAGACGCACGCCGACGTGAGCAACGTGCCCCT
GAGGATCACCAGAGAACCAGAGGCATCTTTGTTGGGTTCGGCCATCCTCG
CCGCCGTGGGGGCGGGGCAGTTTCCGGACATTGAGTCGGCTGCTCGTGAC
ATGGTCCACGTCGAGAGGACGGTGGAGCCAAATCCGGAGGCACACGCGCG
GTACAGAGAGCTGCTGGAGCGGTACAGGGCCGTGTATCCTGCTCTGAAGC
CGATGTTCCATAGCAAGGCAAGACACGAGCCAAATCCGGAGGCACACGCG
CGGTACAGAGAGCTGCTGGAGCGGTACAGGGCCGTGTATCCTGCTCTGAA
GCCGATGTTCCATAGCAAGGCAAGACAC
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