mRNA_H-elongata_contig65259.14114.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A6H5JXI4_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXI4_9PHAE) HSP 1 Score: 472 bits (1215), Expect = 1.010e-163 Identity = 217/288 (75.35%), Postives = 251/288 (87.15%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF-FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCL-EFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGFHTHSKARDHRAKLHFKDSSRKPGAKKKA 858
+GHDCGH+TFS YPWVNA+ GHLCHAPLLVPFWPWAKSHNEHH NHVEKDMSYPWFG +QFE+EV PFTK + KTP P T++ FTYL+ GWYDGSHFNPFSVLFW+R+EQ QCAVST SV+ Y++ S L +F+WSAIV+RH+VP++IMNYWL+MVTYLQHHE+DT TFD+ DFHFATAAMETVDR FGWGIDDAHHNITD HV HHLFFTKIPHYNL+KATAA+RP LE LGLYRYR NP+FLWVF R++Y+LGF+THSKA DHRAK+H+ D+SR P K K+
Sbjct: 95 IGHDCGHTTFSNYPWVNALVGHLCHAPLLVPFWPWAKSHNEHHKYHNHVEKDMSYPWFGKQQFEQEVKPFTKLFLKTPFHPFTSYLFTYLLAGWYDGSHFNPFSVLFWSRKEQVQCAVSTASVLTFIYLLVSVLFDFDWSAIVVRHLVPVMIMNYWLVMVTYLQHHEEDTKTFDNSDFHFATAAMETVDRKFGWGIDDAHHNITDGHVAHHLFFTKIPHYNLQKATAAIRPSLEKLGLYRYRNNPNFLWVFARENYKLGFYTHSKAHDHRAKMHYLDASRTPAFKSKS 382
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A835YPJ0_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ0_9STRA) HSP 1 Score: 349 bits (896), Expect = 1.600e-115 Identity = 162/266 (60.90%), Postives = 203/266 (76.32%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF-FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVI-MAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGFHTHSKA 792
+GHDCGH+TFS Y WVNAVCGHLCHAPLLVPFWPWA+SH++HH NHVEKD S+PWF EQ+ ++ + KTPL PL ++ +YL G++DGSHFNPF LF R ++ QCAVS+ +V + + + +E++WSA +++ P I NYWL+MVTYLQHHE D+ T+DD D+ FA AAMETVDR + WG+DD HHNITD HVVHHLFFTKIPHYNL KAT ALRPYLE LG+YRY++NP FLW F++ +Y+ G THSKA
Sbjct: 96 VGHDCGHTTFSEYTWVNAVCGHLCHAPLLVPFWPWAQSHHQHHSYHNHVEKDHSFPWFRKEQYATQLSGVGRTILKTPLHPLFSYGVSYLFFGYWDGSHFNPFGSLFKNRTQRVQCAVSSLAVALFLGLFLHYVIEYSWSAFAVKYAAPWCIYNYWLVMVTYLQHHEPDSITYDDADYSFAVAAMETVDRKYCWGVDDLHHNITDGHVVHHLFFTKIPHYNLMKATDALRPYLEGLGVYRYQRNPLFLWTFVQYNYKYGLFTHSKA 361
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A1S7C7R3_9STRA (Om n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1S7C7R3_9STRA) HSP 1 Score: 254 bits (649), Expect = 7.520e-78 Identity = 128/263 (48.67%), Postives = 173/263 (65.78%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF-FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMR----HVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGF 774
+GHDCGH +FS Y W+N +CGH+CHAPL+VP+WPW KSH HH NH+ KDMS+PW E FE ++ PF + + PL + F YL G DGSH PFS LF +E+ QCAVST +V+ ++ LE + R +VVPLL+ N W+ MVTYLQHH++DT + + ++++ A+ET+DR +G GIDD HNITD HV HHLFFT+IPHY+L ATAA+R L+ G Y+ R++ +FL F +YRL +
Sbjct: 75 IGHDCGHGSFSEYKWLNDICGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTKEVFE-DLTPFEQALLENPLSLFIKYTFLYLFAGKMDGSHVVPFSPLFTDTKERVQCAVSTLGMVVAGALVYIGLEGGKEGGMARIGSIYVVPLLVFNAWITMVTYLQHHDEDTKVYAEGEWNYIKGALETIDREYGMGIDDLSHNITDGHVAHHLFFTQIPHYHLTAATAAVRQCLQPTGTYKKRRSWNFLARFTELNYRLKY 336
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A7S4PZI0_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4PZI0_9DINO) HSP 1 Score: 249 bits (637), Expect = 2.360e-76 Identity = 118/255 (46.27%), Postives = 177/255 (69.41%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF-FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALG--LYRYRKNPHFLWVFMRD 756
+GHDCGH++FS Y W+N +CGH+CHAPL+VP+WPW +SH+ HH NH +KD S+PW + + +++ + PLF + + YL+ G DGSHF+PFS LF T +++ QCAVS+ SVV + M + +W + PL N WL++VTYLQHH+D+T +D+ ++++ A ETVDR++G+GIDD HHNITD HV+HH+FFT+IPHY+LK+ATAA+ P ++ G LY+++++ FL+ + R+
Sbjct: 112 VGHDCGHTSFSNYGWLNDLCGHICHAPLMVPYWPWRRSHHLHHSYHNHTDKDKSHPWMRQQDWA-QLNAIQAAGMECPLFAFVGYTWIYLLAGICDGSHFSPFSKLFETTQQRVQCAVSSLSVVAFSVGMYFYFD-SWGQWFSMYFGPLCFFNMWLVLVTYLQHHDDETLAYDEGEWNYLRGAFETVDRTYGFGIDDIHHNITDGHVLHHIFFTQIPHYHLKEATAAIVPVIQKYGKGLYKHQESRDFLYKYSRN 364
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: I2CR09_NANGC (Glycerolipid omega-3 fatty acid desaturase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR09_NANGC) HSP 1 Score: 246 bits (627), Expect = 5.300e-74 Identity = 124/263 (47.15%), Postives = 170/263 (64.64%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF-FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMR----HVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGF 774
+GHDCGH +FS Y W N VCGH+CHAPL+VP+WPW KSH HH NH+ KDMS+PW E FE ++ PF + + PL + F YL G DGSH P S LF +E+ QCAVST +++ ++ LE + R +++PLL+ N W+ MVTYLQHH++DT + + ++ + A+ET+DR +G GIDD HNITD HV HHLFFT+IPHY+LK ATAA+R L G Y+ +++ +FL F +Y+L +
Sbjct: 125 IGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE-DLTPFEQALLENPLSLFIKYTFLYLFAGKLDGSHVLPTSPLFSDTKERIQCAVSTLCMLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDDLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKY 386
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A4U8UWN0_STECR (FA_desaturase domain-containing protein n=2 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8UWN0_STECR) HSP 1 Score: 237 bits (605), Expect = 4.870e-71 Identity = 122/263 (46.39%), Postives = 161/263 (61.22%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLF--PLTAFFTYLVM---GWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGF 774
+GHDCGH TFS Y WVN +CGH+ HAP+L P+WPW KSH +HH H+ KD +PW + FEK W + P++AFF ++V G DGSHF P S LF + E+ QC +S + + AYV + ++W ++VP+L +WL MVTYLQH DD N ++D + + M+T+DR +G+GID H+ITD HV HHLFFTKIPHYNL KAT ALR LE G+YR R + FL F R + RL +
Sbjct: 155 VGHDCGHGTFSNYTWVNDICGHIAHAPILAPYWPWQKSHRQHHTYTGHLTKDRGHPWITEKVFEKWG------WSEKQYANNPVSAFFRWVVYTFGGVTDGSHFWPGSSLFNSTTERIQCFISGLACALCAYVAFAFCSYDWLTYGKFYIVPVLCQGFWLTMVTYLQHQSDDINVYEDGTWGYVRGQMQTIDRPYGFGIDQLMHHITDGHVAHHLFFTKIPHYNLMKATKALRDKLEPFGVYRRRVSYDFLLEFCRLNMRLEY 411
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A0N5D9B4_THECL (FA_desaturase domain-containing protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5D9B4_THECL) HSP 1 Score: 229 bits (585), Expect = 8.440e-69 Identity = 110/254 (43.31%), Postives = 156/254 (61.42%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAFFT----YLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFM 750
+GHDCGH TFS Y W+N + GH+ HAPLL P+WPW KSH +HH +H++ DM +PW E F + F F FPL+ F Y V+G DGSHF P+S LF RE+ QC +S S ++ A +++W + + + LL YWL+++TYLQH++ +++ + + ++T+DR +G+GID A H+ITD HV HH FFTKIPHY+L KATAA++ LE G YR + N FLW ++
Sbjct: 93 VGHDCGHGTFSEYTWINDLFGHIAHAPLLAPYWPWKKSHRQHHQYTSHIDNDMGHPWILEEDFLRRGWIFRHF----SKFPLSGFIRWNPIYTVVGLPDGSHFWPYSKLFNNNRERVQCLISGLSCLLCAVGAFVICDYSWFLFIKYYYISLLFQGYWLVIITYLQHNDYSIEVYEEGYWSYVMGQVQTIDRVYGFGIDVAMHHITDGHVAHHFFFTKIPHYHLMKATAAIKKVLEPYGAYRCKSNYDFLWEYL 342
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A1I8CT62_9BILA (FA_desaturase domain-containing protein n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CT62_9BILA) HSP 1 Score: 228 bits (580), Expect = 5.740e-68 Identity = 108/250 (43.20%), Postives = 158/250 (63.20%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAFFTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEAL-GLYRYRKNPHFLWVF 747
+GHDCGH TFS Y W+N +CGH+ HAP++ P+WPW KSH +HH +H+EKD + W FE +D ++ + K P L + Y +G DGSHF P S LF E+ QCAVS +V + ++++ A + + +P YWL++VTYLQH +++ +++ +++ ++T+DR +G+GID H+ITDCHVVHHLFFTKIPHY+LK+AT A++P LE G Y+Y N FLW +
Sbjct: 95 VGHDCGHGTFSNYTWLNDICGHIAHAPIMAPYWPWQKSHRQHHTYTSHLEKDRGHVWITENHFEG-LDVISQNYVKFPPTGLLLWHMYTFLGIPDGSHFWPGSRLFTNTTERIQCAVSALAVAASCFAALYFVDYSVYAWLKYYYLPCCFAGYWLVIVTYLQHRDEEMEIYEEGTWNYVKGQVQTIDRWYGFGIDYLMHHITDCHVVHHLFFTKIPHYHLKEATKAIKPVLEKYEGAYKYHINYQFLWEY 343
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A811KVY1_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811KVY1_9BILA) HSP 1 Score: 228 bits (580), Expect = 7.180e-68 Identity = 114/263 (43.35%), Postives = 168/263 (63.88%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAF----FTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEAL-GLYRYRKNPHFLWVFMRDSYRLGF 774
+GHDCGH TFS Y W+N + GH+ HAP+L P+WPW KSH +HH +H+EKD +PW+ E++ +E +F FK FPL+AF F YL +G DGSH+ P+S LF T ++ +CAVST+ + AYV ++++S V ++ P+L WL+MVTYLQH +++ ++D ++ F +T+DR++G ID H+ITD HV HHLFFTKIPHY+L +AT ++ + GLY+ + N L F+R + RL +
Sbjct: 102 VGHDCGHGTFSEYTWLNDIIGHVAHAPILAPYWPWQKSHRQHHQYTSHLEKDKGHPWYTQEEYVQEPWVIQQF-FK---FPLSAFVRWNFVYLTLGLPDGSHYWPYSKLFKTTEDRVKCAVSTSLCIASAYVAFVICDYSFSTYVKYYLAPVLFQGLWLVMVTYLQHQDEEIEVYEDAEWSFVRGQTQTIDRTYGMFIDTLMHHITDGHVAHHLFFTKIPHYHLIEATEGIKKVFKKYPGLYKKQNNFLTLLEFLRLNVRLDY 360
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Match: A0A1I7Y654_9BILA (FA_desaturase domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7Y654_9BILA) HSP 1 Score: 228 bits (582), Expect = 8.410e-67 Identity = 117/258 (45.35%), Postives = 156/258 (60.47%), Query Frame = 1
Query: 1 LGHDCGHSTFSIYPWVNAVCGHLCHAPLLVPFWPWAKSHNEHHXXXNHVEKDMSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAFFTYLVMGWYDGSHFNPFSVLFWTRREQAQCAVSTTSVVIMAYVMTSCLEFNWSAIVMRHVVPLLIMNYWLIMVTYLQHHEDDTNTFDDEDFHFATAAMETVDRSFGWGIDDAHHNITDCHVVHHLFFTKIPHYNLKKATAALRPYLEALGLYRYRKNPHFLWVFMRDSYRLGF 774
+GHDCGH TFS Y WVN +CGH+ HAP+L P+WPW KSH +HH H+ KD +PW TE+ E K + P+ + + Y V G DGSHF P S LF E+ +C VS + AYV ++ +V+P+L +WL MVTYLQH DD N +++ + + M+TVDR +G+GID H+ITD HV HHLFFTKIPHY+L KAT A+R LE G+YR+R + FL+ F R + RL +
Sbjct: 230 VGHDCGHGTFSNYTWVNDICGHIAHAPILAPYWPWQKSHRQHHTYTGHLTKDRGHPWI-TEEVYSEWGWGQKQYANNPVTAIIRWVMYTVGGVTDGSHFWPTSSLFTNTVERVKCVVSGLACAFCAYVAFVLCGYDLYTYGKFYVLPVLSQGFWLTMVTYLQHQTDDINVYEEGTWGYVRGQMQTVDRPYGFGIDQLMHHITDGHVAHHLFFTKIPHYHLMKATEAIRSKLEPYGVYRHRVSYDFLFEFCRLNMRLEY 486 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65259.14114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65259.14114.1 >prot_H-elongata_contig65259.14114.1 ID=prot_H-elongata_contig65259.14114.1|Name=mRNA_H-elongata_contig65259.14114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp MSYPWFGTEQFEKEVDPFTKFWFKTPLFPLTAFFTYLVMGWYDGSHFNPFback to top mRNA from alignment at H-elongata_contig65259:296..2556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65259.14114.1 ID=mRNA_H-elongata_contig65259.14114.1|Name=mRNA_H-elongata_contig65259.14114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2261bp|location=Sequence derived from alignment at H-elongata_contig65259:296..2556+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65259:296..2556+ >mRNA_H-elongata_contig65259.14114.1 ID=mRNA_H-elongata_contig65259.14114.1|Name=mRNA_H-elongata_contig65259.14114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig65259:296..2556+ (Himanthalia elongata Himel1 dioecious)back to top |