mRNA_H-elongata_contig652.14112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig652.14112.1
Unique NamemRNA_H-elongata_contig652.14112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: D7FYU7_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU7_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.440e-32
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDLASGDRGLAENSGASSSHVAGGLMCANAGTPAVLS 318
            GVRVSDG+S+ + L  PVVLR+WHL GLPSDKTS++SAI  T++ATGRWPLLIDPQ+QACRWLK+K A Q+  S     A  +  +S  V  GL+CANAG+P++LS
Sbjct: 3006 GVRVSDGFSVAQVLITPVVLREWHLQGLPSDKTSVDSAIAATTVATGRWPLLIDPQRQACRWLKNKAAAQENISSTETTAVRN--ASPEVDEGLLCANAGSPSLLS 3109          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: Q24IM0_TETTS (Dynein heavy chain n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24IM0_TETTS)

HSP 1 Score: 82.0 bits (201), Expect = 5.810e-16
Identity = 34/66 (51.52%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    4 VRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKE 201
            +++S+GYSL   LG+P+++R+W+++GLPSD  S E+ I+T +  T RWPL+IDPQQQA RW++  E
Sbjct: 3988 IQISEGYSLESTLGEPIIIRKWNMNGLPSDAFSRENGIITYN--TRRWPLMIDPQQQANRWIRKNE 4051          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: A0A182GUR9_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GUR9_AEDAL)

HSP 1 Score: 80.5 bits (197), Expect = 2.010e-15
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   13 SDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            SD ++LVK LG    +RQW++ GLP D+ S+E+AI++T    GRWPL+IDPQ+QA RW+++ EA+ +L
Sbjct: 2848 SDSFNLVKILGDSFKIRQWNIFGLPRDEISIENAIISTE--AGRWPLIIDPQEQANRWVRNMEAQNEL 2913          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: A0A086KJJ5_TOXGO (ATPase family associated with various cellular activities (AAA) domain-containing protein (Fragment) n=3 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A086KJJ5_TOXGO)

HSP 1 Score: 80.1 bits (196), Expect = 2.700e-15
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAI-VTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            G+  +D +SL + L  P+ LR W L GLPSD+TSLES + V +++  GR PL+IDPQQQA +W+K++E+   L
Sbjct: 1254 GIACADNFSLTEVLSDPIELRDWDLQGLPSDRTSLESGVFVRSAVKLGRAPLVIDPQQQAKKWIKNRESENGL 1326          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: A0A7S2W474_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W474_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.060e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            G+  S+ +SLVK +G PV++R+W + GLP+D+ S  +AI+ T     RWPL+IDPQ QA RW+K KE+R  +
Sbjct:  122 GIPCSNTFSLVKVIGDPVLVREWQIFGLPTDEISTNNAILATR--GKRWPLMIDPQMQANRWIKQKESRNGI 191          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: A0A7M6DM49_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DM49_9CNID)

HSP 1 Score: 79.7 bits (195), Expect = 3.750e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            G+  SD YSL+  L  P  +RQW+  GLPSD  S+E+AI+ T     RWPL+IDPQ QA RW++ KEAR  L
Sbjct: 2986 GIPASDDYSLIHVLADPFEIRQWNSDGLPSDSLSIENAILVTR--GRRWPLMIDPQDQANRWIRTKEARNGL 3055          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: UPI001304464F (dynein heavy chain 6, axonemal n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI001304464F)

HSP 1 Score: 79.3 bits (194), Expect = 5.110e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAI-VTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            GV+ ++ YSLV  L  P  +R W+ HGLP DK S E+AI VT SI   RWPL+IDPQ+QA RW+++ E   DL
Sbjct: 2976 GVKTTESYSLVSILADPYKIRLWNTHGLPRDKVSTENAIFVTQSI---RWPLMIDPQEQANRWIRNMEQENDL 3045          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: A0A1S4EW29_AEDAE (Dynein heavy chain n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A1S4EW29_AEDAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.520e-15
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   13 SDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            SD ++LVK LG    +RQW++ GLP D+ S+E+AI++T    GRWPL+IDPQ+QA RW+++ E+  +L
Sbjct: 2822 SDKFNLVKILGDSFQIRQWNIFGLPRDEISIENAIISTE--AGRWPLIIDPQEQANRWIRNMESHNEL 2887          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: Q17P46_AEDAE (AAEL000512-PA n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q17P46_AEDAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.520e-15
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   13 SDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            SD ++LVK LG    +RQW++ GLP D+ S+E+AI++T    GRWPL+IDPQ+QA RW+++ E+  +L
Sbjct: 2868 SDKFNLVKILGDSFQIRQWNIFGLPRDEISIENAIISTE--AGRWPLIIDPQEQANRWIRNMESHNEL 2933          
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Match: UPI001863DCD9 (LOW QUALITY PROTEIN: dynein heavy chain 6, axonemal n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863DCD9)

HSP 1 Score: 78.6 bits (192), Expect = 9.530e-15
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWPLLIDPQQQACRWLKHKEARQDL 216
            G+ +SDG+SLV  LG P  +RQW+  GLP D  S E+ I+ T     RWPL+IDPQ QA RW++ KE +  L
Sbjct: 3032 GIPISDGFSLVNILGDPYEIRQWNAEGLPRDTVSTENGILVTR--GRRWPLMIDPQDQANRWIRSKETKNGL 3101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig652.14112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYU7_ECTSI1.440e-3261.32Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
Q24IM0_TETTS5.810e-1651.52Dynein heavy chain n=1 Tax=Tetrahymena thermophila... [more]
A0A182GUR9_AEDAL2.010e-1551.47Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A086KJJ5_TOXGO2.700e-1549.32ATPase family associated with various cellular act... [more]
A0A7S2W474_9STRA3.060e-1548.61Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7M6DM49_9CNID3.750e-1552.78Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
UPI001304464F5.110e-1553.42dynein heavy chain 6, axonemal n=1 Tax=Nomia melan... [more]
A0A1S4EW29_AEDAE9.520e-1550.00Dynein heavy chain n=1 Tax=Aedes aegypti TaxID=715... [more]
Q17P46_AEDAE9.520e-1550.00AAEL000512-PA n=1 Tax=Aedes aegypti TaxID=7159 Rep... [more]
UPI001863DCD99.530e-1550.00LOW QUALITY PROTEIN: dynein heavy chain 6, axonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig652contigH-elongata_contig652:16444..17100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog2880.D7FYU7
KEGG koko:K10408
KEGG Pathwayko05016,map05016
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig652.14112.1prot_H-elongata_contig652.14112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig652 16444..17100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.4729252-CDS-H-elongata_contig652:16443..165621622931039.4729252-CDS-H-elongata_contig652:16443..16562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 16444..16562 -
1691679672.9549425-CDS-H-elongata_contig652:16443..165621691679672.9549425-CDS-H-elongata_contig652:16443..16562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 16444..16562 -
1622931039.492803-CDS-H-elongata_contig652:16703..168661622931039.492803-CDS-H-elongata_contig652:16703..16866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 16704..16866 -
1691679672.9724038-CDS-H-elongata_contig652:16703..168661691679672.9724038-CDS-H-elongata_contig652:16703..16866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 16704..16866 -
1622931039.5129817-CDS-H-elongata_contig652:17064..171001622931039.5129817-CDS-H-elongata_contig652:17064..17100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 17065..17100 -
1691679672.9827554-CDS-H-elongata_contig652:17064..171001691679672.9827554-CDS-H-elongata_contig652:17064..17100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig652 17065..17100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig652.14112.1

>prot_H-elongata_contig652.14112.1 ID=prot_H-elongata_contig652.14112.1|Name=mRNA_H-elongata_contig652.14112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GVRVSDGYSLVKALGKPVVLRQWHLHGLPSDKTSLESAIVTTSIATGRWP
LLIDPQQQACRWLKHKEARQDLASGDRGLAENSGASSSHVAGGLMCANAG
TPAVLS
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mRNA from alignment at H-elongata_contig652:16444..17100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig652.14112.1 ID=mRNA_H-elongata_contig652.14112.1|Name=mRNA_H-elongata_contig652.14112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at H-elongata_contig652:16444..17100- (Himanthalia elongata Himel1 dioecious)
GGTGTACGCGTGTCTGATGGATATTCTTTAGTGAAGGTGGGAACGAGGAC GCACGGAGATATTGACTGGCTAAAATATCGTTTAAGCCCTTGTCATCGCC GATACCGAAGGGTTCATTCGATGTGACAATCATTCTTCATTAGGTGAAAA CATTTTCCTCCGAACCGAGAGCCTCTCTAATCTTGATTCTATGGGAGGAA ACACGTGAAACATCTGATTATTGTGTCGGAGCAGGCCTTGGGAAAACCAG TTGTATTGCGGCAATGGCATCTCCACGGGCTTCCGAGTGACAAGACCTCG CTGGAAAGTGCGATTGTGACCACGAGCATTGCCACTGGAAGATGGCCCCT TTTAATTGACCCACAGCAGCAAGCCTGCCGCTGGCTGAAGCACAAAGGTA CGAAAATAAGGGTTATTGTACACTATACTCAGGCAGCGCACGTGCGACAG AATGTATTTTGATCGGATGATCGCTGCACTCCCCTCTACCGCGCTGTGCG CTGTCCCCCACCTCGATTCCCCTTAATCACGCGCTCAGAGGCCAGACAAG ACCTCGCGAGTGGTGATAGGGGCTTGGCCGAAAATAGCGGCGCTAGTTCT TCTCATGTCGCCGGGGGGTTAATGTGTGCCAACGCGGGCACTCCCGCAGT CCTATCA
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Coding sequence (CDS) from alignment at H-elongata_contig652:16444..17100-

>mRNA_H-elongata_contig652.14112.1 ID=mRNA_H-elongata_contig652.14112.1|Name=mRNA_H-elongata_contig652.14112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig652:16444..17100- (Himanthalia elongata Himel1 dioecious)
GGTGTACGCGTGTCTGATGGATATTCTTTAGTGAAGGGTGTACGCGTGTC
TGATGGATATTCTTTAGTGAAGGCCTTGGGAAAACCAGTTGTATTGCGGC
AATGGCATCTCCACGGGCTTCCGAGTGACAAGACCTCGCTGGAAAGTGCG
ATTGTGACCACGAGCATTGCCACTGGAAGATGGCCCCTTTTAATTGACCC
ACAGCAGCAAGCCTGCCGCTGGCTGAAGCACAAAGGCCTTGGGAAAACCA
GTTGTATTGCGGCAATGGCATCTCCACGGGCTTCCGAGTGACAAGACCTC
GCTGGAAAGTGCGATTGTGACCACGAGCATTGCCACTGGAAGATGGCCCC
TTTTAATTGACCCACAGCAGCAAGCCTGCCGCTGGCTGAAGCACAAAGAG
GCCAGACAAGACCTCGCGAGTGGTGATAGGGGCTTGGCCGAAAATAGCGG
CGCTAGTTCTTCTCATGTCGCCGGGGGGTTAATGTGTGCCAACGCGGGCA
CTCCCGCAGTCCTATCAAGGCCAGACAAGACCTCGCGAGTGGTGATAGGG
GCTTGGCCGAAAATAGCGGCGCTAGTTCTTCTCATGTCGCCGGGGGGTTA
ATGTGTGCCAACGCGGGCACTCCCGCAGTCCTATCA
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