mRNA_H-elongata_contig65161.14107.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65161.14107.1
Unique NamemRNA_H-elongata_contig65161.14107.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65161.14107.1 vs. uniprot
Match: A0A6H5KHL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6
Identity = 33/67 (49.25%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:   10 DKLPQAEELHRRALKIRQYTLGEDHPSTIASLCHLAASLRDQGKTSQCELLQRRAYEIRTTSREKAR 210
            +KLPQAEELHRRALKIRQYTLGED                        +LL RRA EIR+ +R + R
Sbjct: 2998 NKLPQAEELHRRALKIRQYTLGEDXXXXXXXXXXXXXXXXXXXXXHAGDLLLRRAGEIRSPARSRGR 3064
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65161.14107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHL0_9PHAE6.890e-649.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65161contigH-elongata_contig65161:694..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.4084353-CDS-H-elongata_contig65161:693..10831622931038.4084353-CDS-H-elongata_contig65161:693..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65161 694..1083 +
1691679672.4441042-CDS-H-elongata_contig65161:693..10831691679672.4441042-CDS-H-elongata_contig65161:693..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65161 694..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65161.14107.1prot_H-elongata_contig65161.14107.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65161 694..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65161.14107.1

>prot_H-elongata_contig65161.14107.1 ID=prot_H-elongata_contig65161.14107.1|Name=mRNA_H-elongata_contig65161.14107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
RRQDKLPQAEELHRRALKIRQYTLGEDHPSTIASLCHLAASLRDQGKTSQ
CELLQRRAYEIRTTSREKARSSRIGLEVKASHWDGGYEMERYEEDRLPPL
VTMGEVNRGMDAAQWGGRRSFGGVGRGRGE
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mRNA from alignment at H-elongata_contig65161:694..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65161.14107.1 ID=mRNA_H-elongata_contig65161.14107.1|Name=mRNA_H-elongata_contig65161.14107.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig65161:694..1083+ (Himanthalia elongata Himel1 dioecious)
CGTCGACAGGACAAGCTTCCTCAAGCGGAGGAGCTCCACCGGCGCGCCCT
CAAGATCCGGCAGTATACACTCGGAGAGGACCACCCCAGCACAATTGCGA
GCCTATGCCACCTGGCGGCGTCTCTCCGGGACCAAGGCAAGACGAGCCAG
TGCGAACTCCTCCAGCGCCGGGCGTACGAGATTAGGACCACGTCTCGCGA
AAAGGCGAGGTCATCAAGGATTGGACTTGAGGTGAAGGCCTCGCATTGGG
ATGGAGGATACGAGATGGAGCGCTACGAGGAAGATCGACTGCCGCCGCTG
GTTACAATGGGCGAAGTGAACCGCGGGATGGATGCTGCCCAGTGGGGAGG
TAGAAGAAGTTTTGGAGGCGTCGGTCGGGGAAGGGGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig65161:694..1083+

>mRNA_H-elongata_contig65161.14107.1 ID=mRNA_H-elongata_contig65161.14107.1|Name=mRNA_H-elongata_contig65161.14107.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig65161:694..1083+ (Himanthalia elongata Himel1 dioecious)
CGTCGACAGGACAAGCTTCCTCAAGCGGAGGAGCTCCACCGGCGCGCCCT
CAAGATCCGGCAGTATACACTCGGAGAGGACCACCCCAGCACAATTGCGA
GCCTATGCCACCTGGCGGCGTCTCTCCGGGACCAAGGCAAGACGAGCCAG
TGCGAACTCCTCCAGCGCCGGGCGTACGAGATTAGGACCACGTCTCGCGA
AAAGGCGAGGTCATCAAGGATTGGACTTGAGGTGAAGGCCTCGCATTGGG
ATGGAGGATACGAGATGGAGCGCTACGAGGAAGATCGACTGCCGCCGCTG
GTTACAATGGGCGAAGTGAACCGCGGGATGGATGCTGCCCAGTGGGGAGG
TAGAAGAAGTTTTGGAGGCGTCGGTCGGGGAAGGGGAGAGCGTCGACAGG
ACAAGCTTCCTCAAGCGGAGGAGCTCCACCGGCGCGCCCTCAAGATCCGG
CAGTATACACTCGGAGAGGACCACCCCAGCACAATTGCGAGCCTATGCCA
CCTGGCGGCGTCTCTCCGGGACCAAGGCAAGACGAGCCAGTGCGAACTCC
TCCAGCGCCGGGCGTACGAGATTAGGACCACGTCTCGCGAAAAGGCGAGG
TCATCAAGGATTGGACTTGAGGTGAAGGCCTCGCATTGGGATGGAGGATA
CGAGATGGAGCGCTACGAGGAAGATCGACTGCCGCCGCTGGTTACAATGG
GCGAAGTGAACCGCGGGATGGATGCTGCCCAGTGGGGAGGTAGAAGAAGT
TTTGGAGGCGTCGGTCGGGGAAGGGGAGAG
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