mRNA_H-elongata_contig65143.14104.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65143.14104.1
Unique NamemRNA_H-elongata_contig65143.14104.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Match: D7G533_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G533_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.410e-44
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 LQEMGVEREKKRLAVARTSGAIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQDTAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRVLAKLKGITHELESKELDRAARNLQ 333
            LQEMGVE E+KRLA+A  +GAIEE YRQ L SHA R N+VQDSLEG+E RFQ T HKAVRIGDRLS+ME QRARAAEAMDLLE L+VLAKLK ITHELESKELD AA+ LQ
Sbjct:   42 LQEMGVEGERKRLAMAGETGAIEEDYRQGLASHATRLNEVQDSLEGVEHRFQWTVHKAVRIGDRLSKMEGQRARAAEAMDLLEFLKVLAKLKSITHELESKELDEAAKKLQ 152
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BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Match: D8LCE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.400e-39
Identity = 88/149 (59.06%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    1 LQEMGVEREKKRLAVARTSGAIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQDTAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRV--------------------------------------LAKLKGITHELESKELDRAARNLQ 333
            LQEMGVE E+KRLA+A  +GAIEE YRQ LTSHA R NKVQDSLEG+E RF++TAHKAVRIGDRLS+ME QRARAAEAMD+LE  +V                                      LAKLK ITHELESKELD+AA+NLQ
Sbjct:   76 LQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDILEFFKVFEGLPEGFSEDQDTVVRYMKLLPPVFCDEDRRAEAATVLAKLKSITHELESKELDKAAKNLQ 224
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BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Match: A0A6H5KKI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI1_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.650e-38
Identity = 89/149 (59.73%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    1 LQEMGVEREKKRLAVARTSGAIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQDTAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRV--------------------------------------LAKLKGITHELESKELDRAARNLQ 333
            LQEMGVE E+KRLA+A  +GAIEE YRQ LTSHA R NKVQDSLEG+E RF++TAHKAVRIGDRLS+ME QRARAAEAMDLLE  +V                                      LAKLK ITHELESKELD+AA+NLQ
Sbjct:  151 LQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKVFEGLPEGFSEDQDTVVRYMKLLPPVFCDEDRRPEAATVLAKLKSITHELESKELDKAAKNLQ 299
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BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Match: D7G517_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G517_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.250e-28
Identity = 70/109 (64.22%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:    1 LQEMGVEREKKRLAVARTSGAIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQDTAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRVLAKLKGITHELESKELDRAARN 327
            LQEMGVE E+KRLA+A  +GAIEE  RQ LTSHA R N+                  AVRIGDRLS+ME QRARAAEAMDLLE  +VLAKLK ITHELESKELD+AA++
Sbjct:   75 LQEMGVEGERKRLAMAGETGAIEEDCRQGLTSHATRLNE------------------AVRIGDRLSKMEGQRARAAEAMDLLEFFKVLAKLKSITHELESKELDKAAKS 165
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BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Match: A0A836C6X2_9STRA (Exocyst complex component Sec10-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.690e-5
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   61 AIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQDTAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRVLAKL 273
            ++E+ YR  L+ H      +  +L  +++RF+     AVRIGD L R EAQRARAA+A++LLE  +V  +L
Sbjct:  106 SVEDDYRGGLSQHQSTLELLSANLARVDERFRKVTADAVRIGDSLGRKEAQRARAADAIELLEHFKVFDEL 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65143.14104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G533_ECTSI1.410e-4478.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCE4_ECTSI6.400e-3959.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKI1_9PHAE1.650e-3859.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G517_ECTSI5.250e-2864.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C6X2_9STRA3.690e-542.25Exocyst complex component Sec10-domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65143contigH-elongata_contig65143:207..2685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExocyst complex component Sec10-like
Ec32 orthologEc-00_008320.1
Exons4
Model size333
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65143.14104.1prot_H-elongata_contig65143.14104.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65143 207..2676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.1370854-CDS-H-elongata_contig65143:206..2811622931038.1370854-CDS-H-elongata_contig65143:206..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 207..281 -
1691679672.3183992-CDS-H-elongata_contig65143:206..2811691679672.3183992-CDS-H-elongata_contig65143:206..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 207..281 -
1622931038.1502042-CDS-H-elongata_contig65143:771..7811622931038.1502042-CDS-H-elongata_contig65143:771..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 772..781 -
1691679672.3288321-CDS-H-elongata_contig65143:771..7811691679672.3288321-CDS-H-elongata_contig65143:771..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 772..781 -
1622931038.1628108-CDS-H-elongata_contig65143:2121..22521622931038.1628108-CDS-H-elongata_contig65143:2121..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 2122..2252 -
1691679672.341532-CDS-H-elongata_contig65143:2121..22521691679672.341532-CDS-H-elongata_contig65143:2121..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 2122..2252 -
1622931038.2016833-CDS-H-elongata_contig65143:2568..26761622931038.2016833-CDS-H-elongata_contig65143:2568..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 2569..2676 -
1691679672.3500798-CDS-H-elongata_contig65143:2568..26761691679672.3500798-CDS-H-elongata_contig65143:2568..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65143 2569..2676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.2147782-UTR-H-elongata_contig65143:2676..26851622931038.2147782-UTR-H-elongata_contig65143:2676..2685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65143 2677..2685 -
1691679672.3583646-UTR-H-elongata_contig65143:2676..26851691679672.3583646-UTR-H-elongata_contig65143:2676..2685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65143 2677..2685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65143.14104.1

>prot_H-elongata_contig65143.14104.1 ID=prot_H-elongata_contig65143.14104.1|Name=mRNA_H-elongata_contig65143.14104.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MGVEREKKRLAVARTSGAIEEAYRQDLTSHALRHNKVQDSLEGMEQRFQD
TAHKAVRIGDRLSRMEAQRARAAEAMDLLETLRVLAKLKGITHELESKEL
DRAARNLQ
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mRNA from alignment at H-elongata_contig65143:207..2685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65143.14104.1 ID=mRNA_H-elongata_contig65143.14104.1|Name=mRNA_H-elongata_contig65143.14104.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2479bp|location=Sequence derived from alignment at H-elongata_contig65143:207..2685- (Himanthalia elongata Himel1 dioecious)
CTTCAGGAGATGGGCGTCGAGAGGGAGAAGAAGAGGCTAGCGGTGGCAAG
GACTTCGGGGGCGATAGAGGAGGCCTATCGACAGGACTTAACTTCGCACG
CCCTCAGACACAACAAGGTAAACATGCATGTGCAGGCGAATCTACCGATA
ATTCTGGAGACCTATAGTTACCCCCGTTGCTAAGGCATACACATTATAAT
GGAACTCCTCGGGAGGGATCGGTGGGGGTAATGTGAAGGGTAGGAGGGGG
GGGGGGGGGGGGATAGACAGGGCGTCGGCGGCTTCGTGCAAAGTGAATGA
AAGGCGCGCGAAACGACGGAGTGCTTTTGCCTATAAAGGCTTACCAGAAA
TCGCTAAAAAAAACTTCCATCCCATCCCATTCCATCCCTTACCGGCCCTA
TTATATACGGTATATGTATGTATTCGCGACAAGGTACAAGATTCCTTGGA
GGGAATGGAACAAAGGTTTCAGGATACGGCTCATAAGGCCGTGCGGATCG
GCGACCGCCTATCGAGAATGGAAGCGCAGCGGGCGAGGGCAGCCGAGGCG
ATGGACCTCCTGGAGTACTTCGAGGCGAGGCGGCGGGGCAGTGAAGCCCC
CCACCCTAGCGCTACTCTCATGTAGTACATTATTCTTTAGTGTATTATGT
AGCCTAGGCTGTAGTGTACAGTTGTTGTTATTGTTTTTCACATTCAGCGT
ATTGATTGCCAACCCGAAAAAAAAAACTAATGATGGAATTATGTTGATTC
TATCGTATTGATGGCGTATGATCTCGTCGCCGGAGTAATATACGGTAGTT
AGTGATCACCATGTTGTAAGCCACTAGGCGCAAAAGTCATGGCTTCGATC
CCCACCGGTTATATGATGGCGTATGATCTCGTCGCCGGAGTAATATACGG
TAGTTAGTGGTCACCATGTTGTAAGCCGCTAGGTGCGAAAGTTATGGCTT
CGATCCCCACCGGTTATATTTATTTTCTTTCTGTAGCGATCATAATCTAT
ATACTGATTCTTAGTCGTACAGTAGCCTAAAACGGGAGAACGAGACTAAG
CAAAGTTCTCAGCCATTGGTTGATGACAAGCTGTAGGAACGCTAAACTTG
CGCGTCGTGATAAAAATTAATCGTAGGGAGGCGTTAACTAACCGGGGAGA
GATATGATACGACAGGCGGCGTCATGGGAAGCATTGCAGGAGGGGGTCAT
GGGAATTGGCAATTTGTTATTTGCACGGTGGAGGGGGTCATGTCATATCG
ACAGGAACAGAAAGTACGTACACACACACACACACACACACACACGATAA
TGGGTGCCAAAGGAAGAATCGCGTGCTTTCTGTGATGGGTCTGATGGCCC
CAGGTGTTCGAGGGCCTCCCGGAAGAGTTCGCGGAAGACCAGGACACCGT
CGTGCGTTTCATGAAGCTGCTGCCCCCCGTGTTCAGCGACGAGGACAGGA
GATCCGAGGCTGCCATGGTGAGCGTTTTGAGTTTTTCCATTCCTTTCCTC
CTTCCCCTTCCCTTTCCCGCTAATAAATAAATGATGATTTTATGAGAATT
TTATAATGATTTTATGATAATTTTATGACGGTTTTTATGAAAAGTTTATG
ATGATTTTATGGTAATTTTATGACGATTTTATGGTAATTTTATGACGATT
TTATGGTAATTTTATGATGATTTTATGGTAATTTTATGACGATTTTATGG
TAATTTTATGATAATTTTCGTAAGCCAGAGCTTACTGGTAAGAGTCACCA
GTTCAAGGCTATACTAGTGGACGGAGGGACATAAGTAATGGTTTCGACAC
TCTAACGATGCCAGGCACTTTATTTCTCTTTTCTCTTTTTCTCTTTTTAT
CTCTTCTTGTCCCCTCTTCTTGTCCCCTCCGTGCGCTTGAGGCGGCGGTT
ACAGGACACTTCGTGTGTTTGTTTTTTTCTTCCTTTTAGCGTATTGTCCT
TACAGCAGCTCTCTATGATCGTAAGTCTGATGGTCCCTCGTCAGCACCGT
TGGCATAAACAGAAAATTGAGGGCGGGTAGAGTCTTATGGACGCGCGACA
GGCGATAGCCAGAAAGGCCAAAAAAGAAGGGAAGAAAAGAAAAAGAGAAG
ATTAAATTAAAAGGACAATTAGATGCCGTATTTGTAAATAAGAGTGGGTA
TACCTACTCGAACCTGACGATAGATTGTTGATCCCCTGAACTAGGCTTCA
CCTCTCATGGTGTAAAAAAAGAAGGTGTGGATATTTCAAAGGTTTGAATG
ACGTCATATTTAAAAAAGAAGAAATGGATCACAGTCCTAGAAACGAAACG
AAACGAAACGAACCGAAACGAAACGGAACAAATCCCCCCCTCCCTCTCCC
TCTCGCCCCCTCCCCCCTCCCCCCTATCTTGAAACGTTTTTCCCTGGCGA
AAAGGTGCTGGCGAAGCTAAAAGGCATCACGCACGAGCTAGAGTCGAAAG
AGCTCGACCGGGCCGCTCGCAACTTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig65143:207..2685-

>mRNA_H-elongata_contig65143.14104.1 ID=mRNA_H-elongata_contig65143.14104.1|Name=mRNA_H-elongata_contig65143.14104.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig65143:207..2685- (Himanthalia elongata Himel1 dioecious)
ATGGGCGTCGAGAGGGAGAAGAAGAGGCTAGCGGTGGCAAGGACTTCGGG
GGCGATAGAGGAGGCCTATCGACAGGACTTAACTTCGCACGCCCTCAGAC
ACAACAAGATGGGCGTCGAGAGGGAGAAGAAGAGGCTAGCGGTGGCAAGG
ACTTCGGGGGCGATAGAGGAGGCCTATCGACAGGACTTAACTTCGCACGC
CCTCAGACACAACAAGGTACAAGATTCCTTGGAGGGAATGGAACAAAGGT
TTCAGGATACGGCTCATAAGGCCGTGCGGATCGGCGACCGCCTATCGAGA
ATGGAAGCGCAGCGGGCGAGGGCAGCCGAGGCGATGGACCTCCTGGAGTA
CAAGATTCCTTGGAGGGAATGGAACAAAGGTTTCAGGATACGGCTCATAA
GGCCGTGCGGATCGGCGACCGCCTATCGAGAATGGAAGCGCAGCGGGCGA
GGGCAGCCGAGGCGATGGACCTCCTGGAGACACTTCGTGACACTTCGTGT
GCTGGCGAAGCTAAAAGGCATCACGCACGAGCTAGAGTCGAAAGAGCTCG
ACCGGGCCGCTCGCAACTTACAGGTGCTGGCGAAGCTAAAAGGCATCACG
CACGAGCTAGAGTCGAAAGAGCTCGACCGGGCCGCTCGCAACTTACAG
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