mRNA_H-elongata_contig6512.14103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6512.14103.1
Unique NamemRNA_H-elongata_contig6512.14103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6512.14103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6512contigH-elongata_contig6512:3201..3573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size375
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.0358462-CDS-H-elongata_contig6512:3200..35721622931038.0358462-CDS-H-elongata_contig6512:3200..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6512 3201..3572 +
1691679672.2958162-CDS-H-elongata_contig6512:3200..35721691679672.2958162-CDS-H-elongata_contig6512:3200..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6512 3201..3572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6512.14103.1prot_H-elongata_contig6512.14103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6512 3201..3572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6512.14103.1

>prot_H-elongata_contig6512.14103.1 ID=prot_H-elongata_contig6512.14103.1|Name=mRNA_H-elongata_contig6512.14103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
RPPFLSPALGSSLKTFRGITLLNAGSVATVFSRLMWLRIPYPPRQPTGNS
CGFSETAGKNWLLSPLRERALWMALGSLFLALVVPGIVGLFRQMSPFSFP
HSSSERDGIGQFQPNRGDGDSPWQ
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mRNA from alignment at H-elongata_contig6512:3201..3573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6512.14103.1 ID=mRNA_H-elongata_contig6512.14103.1|Name=mRNA_H-elongata_contig6512.14103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=373bp|location=Sequence derived from alignment at H-elongata_contig6512:3201..3573+ (Himanthalia elongata Himel1 dioecious)
CGCCCACCTTTCTTGTCACCGGCGTTGGGATCGTCTTTGAAGACGTTCAG
GGGCATCACACTCCTCAACGCAGGGTCCGTAGCTACGGTGTTCAGCCGGC
TGATGTGGCTCCGTATCCCGTACCCCCCGCGACAGCCAACCGGGAATAGC
TGCGGTTTTAGCGAGACGGCCGGGAAAAATTGGTTGCTATCACCGCTCCG
GGAGCGAGCACTATGGATGGCCCTCGGATCACTGTTCCTAGCGCTAGTTG
TACCAGGGATCGTCGGCTTATTTAGGCAAATGTCTCCGTTTTCTTTCCCA
CACAGCTCCTCAGAAAGAGATGGAATCGGCCAATTCCAACCTAATCGGGG
TGATGGGGACTCTCCCTGGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig6512:3201..3573+

>mRNA_H-elongata_contig6512.14103.1 ID=mRNA_H-elongata_contig6512.14103.1|Name=mRNA_H-elongata_contig6512.14103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig6512:3201..3573+ (Himanthalia elongata Himel1 dioecious)
CGCCCACCTTTCTTGTCACCGGCGTTGGGATCGTCTTTGAAGACGTTCAG
GGGCATCACACTCCTCAACGCAGGGTCCGTAGCTACGGTGTTCAGCCGGC
TGATGTGGCTCCGTATCCCGTACCCCCCGCGACAGCCAACCGGGAATAGC
TGCGGTTTTAGCGAGACGGCCGGGAAAAATTGGTTGCTATCACCGCTCCG
GGAGCGAGCACTATGGATGGCCCTCGGATCACTGTTCCTAGCGCTAGTTG
TACCAGGGATCGTCGGCTTATTTAGGCAAATGTCTCCGTTTTCTTTCCCA
CACAGCTCCTCAGAAAGAGATGGAATCGGCCAATTCCAACCTAATCGGGG
TGATGGGGACTCTCCCTGGCAGCGCCCACCTTTCTTGTCACCGGCGTTGG
GATCGTCTTTGAAGACGTTCAGGGGCATCACACTCCTCAACGCAGGGTCC
GTAGCTACGGTGTTCAGCCGGCTGATGTGGCTCCGTATCCCGTACCCCCC
GCGACAGCCAACCGGGAATAGCTGCGGTTTTAGCGAGACGGCCGGGAAAA
ATTGGTTGCTATCACCGCTCCGGGAGCGAGCACTATGGATGGCCCTCGGA
TCACTGTTCCTAGCGCTAGTTGTACCAGGGATCGTCGGCTTATTTAGGCA
AATGTCTCCGTTTTCTTTCCCACACAGCTCCTCAGAAAGAGATGGAATCG
GCCAATTCCAACCTAATCGGGGTGATGGGGACTCTCCCTGGCAG
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