mRNA_H-elongata_contig65107.14101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig65107.14101.1
Unique Name	mRNA_H-elongata_contig65107.14101.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.480e-23
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRD++N+NG R L  +A+++LS++NT+
Sbjct:   15 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CSDAKIMGAYGRDVMNNNGERLLGLAADNRLSLINTY 128

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5JQN0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.120e-23
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:   15 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 128

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.910e-22
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:   75 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 188

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.540e-21
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:   15 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 128

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.780e-21
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:   75 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 188

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.820e-21
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:  187 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 300

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.840e-21
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAPTETA N        K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +A+++LS++NT+
Sbjct:  308 ISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTY 421

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.140e-19
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+   H      +VGYAPTET           K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG RRL  +++++LS+ NT+
Sbjct:  230 ISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERRLGLASDNQLSLTNTY 343

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.560e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1

Query:    1 ISARLLKVRVMFKHRAVKTFIVGYAPTETAANCH------KSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            IS RL+KVR+        TF+VGYAP ETA          K  FW  L + + EV +RD L+++MD NARTG R +G       ++  YGRDI+N+NG R L  +++++LS+ NT+
Sbjct:   70 ISPRLMKVRLQIGRTCGVTFVVGYAPMETARTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 183

[Close]

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.610e-15
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1

Query:    1 ISARLLKVRVMFK-HRAVKTFIVGYAPTETAANCHKSKFWKELRSTVAEVPARDRLILVMDTNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF 330
            I  RL+ +R++   HR    F+   APTE +    K  FW +L S V  +P+++ + +++D NARTG R +GG  R + +   YGRD LNDNG   L  + E++L++ NTF
Sbjct:  146 IDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGGDGRVIGM---YGRDELNDNGMLLLNFATENRLALTNTF 253

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot

BLAST of mRNA_H-elongata_contig65107.14101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
A0A6H5KDU8_9PHAE	1.480e-23	43.97	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JQN0_9PHAE	6.120e-23	44.83	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KP87_9PHAE	1.910e-22	44.83	Endo/exonuclease/phosphatase domain-containing pro...	[more]
A0A6H5KL25_9PHAE	5.540e-21	44.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC90_9PHAE	5.780e-21	44.83	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JQH5_9PHAE	5.820e-21	44.83	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KDI8_9PHAE	5.840e-21	44.83	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K5A7_9PHAE	6.140e-19	42.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6H7_9PHAE	1.560e-18	42.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBD7_9PHAE	2.610e-15	38.74	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig65107	contig	H-elongata_contig65107:2759..3127 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	369
Cds size	339
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931037.9675395-CDS-H-elongata_contig65107:2758..3097	1622931037.9675395-CDS-H-elongata_contig65107:2758..3097	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65107 2759..3097 -
1691679672.2775726-CDS-H-elongata_contig65107:2758..3097	1691679672.2775726-CDS-H-elongata_contig65107:2758..3097	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig65107 2759..3097 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931037.9895365-UTR-H-elongata_contig65107:3097..3127	1622931037.9895365-UTR-H-elongata_contig65107:3097..3127	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig65107 3098..3127 -
1691679672.2867541-UTR-H-elongata_contig65107:3097..3127	1691679672.2867541-UTR-H-elongata_contig65107:3097..3127	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig65107 3098..3127 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig65107.14101.1	prot_H-elongata_contig65107.14101.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig65107 2759..3097 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig65107:2759..3127-
coding sequence from alignment at H-elongata_contig65107:2759..3127-

protein sequence of mRNA_H-elongata_contig65107.14101.1

>prot_H-elongata_contig65107.14101.1 ID=prot_H-elongata_contig65107.14101.1|Name=mRNA_H-elongata_contig65107.14101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MFKHRAVKTFIVGYAPTETAANCHKSKFWKELRSTVAEVPARDRLILVMD
TNARTGGRGEGGGRRYVWVLRPYGRDILNDNGSRRLACSAEHKLSIVNTF
SARQSVGETRMRS

mRNA from alignment at H-elongata_contig65107:2759..3127-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig65107.14101.1 ID=mRNA_H-elongata_contig65107.14101.1|Name=mRNA_H-elongata_contig65107.14101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig65107:2759..3127- (Himanthalia elongata Himel1 dioecious)
ATTAGTGCGCGGCTGCTGAAGGTGAGGGTGATGTTCAAACACAGAGCCGT
CAAAACCTTCATCGTGGGATACGCTCCAACTGAAACAGCAGCCAACTGTC
ACAAGTCTAAGTTCTGGAAGGAACTTCGCAGCACTGTCGCTGAGGTACCT
GCCAGGGACCGCCTGATTTTGGTGATGGATACTAACGCTCGTACGGGAGG
AAGGGGAGAGGGAGGTGGACGACGGTATGTCTGGGTTTTGAGACCATACG
GCAGAGATATTCTCAATGACAACGGGTCGCGACGTCTAGCATGTTCTGCC
GAGCACAAGCTGTCGATTGTCAACACCTTTTCAGCACGCCAAAGCGTGGG
GGAAACTCGGATGCGTTCA

Coding sequence (CDS) from alignment at H-elongata_contig65107:2759..3127-

>mRNA_H-elongata_contig65107.14101.1 ID=mRNA_H-elongata_contig65107.14101.1|Name=mRNA_H-elongata_contig65107.14101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig65107:2759..3127- (Himanthalia elongata Himel1 dioecious)
ATGTTCAAACACAGAGCCGTCAAAACCTTCATCGTGGGATACGCTCCAAC
TGAAACAGCAGCCAACTGTCACAAGTCTAAGTTCTGGAAGGAACTTCGCA
GCACTGTCGCTGAGGTACCTGCCAGGGACCGCCTGATTTTGGTGATGGAT
ACTAACGCTCGTACGGGAGGAAGGGGAGAGGGAGGTGGACGACGGTATGT
CTGGGTTTTGAGACCATACGGCAGAGATATTCTCAATGACAACGGGTCGC
GACGTCTAGCATGTTCTGCCGAGCACAAGCTGTCGATTGTCAACACCTTT
TCAGCACGCCAAAGCGTGGGGGAAACTCGGATGCGTTCAATGTTCAAACA
CAGAGCCGTCAAAACCTTCATCGTGGGATACGCTCCAACTGAAACAGCAG
CCAACTGTCACAAGTCTAAGTTCTGGAAGGAACTTCGCAGCACTGTCGCT
GAGGTACCTGCCAGGGACCGCCTGATTTTGGTGATGGATACTAACGCTCG
TACGGGAGGAAGGGGAGAGGGAGGTGGACGACGGTATGTCTGGGTTTTGA
GACCATACGGCAGAGATATTCTCAATGACAACGGGTCGCGACGTCTAGCA
TGTTCTGCCGAGCACAAGCTGTCGATTGTCAACACCTTTTCAGCACGCCA
AAGCGTGGGGGAAACTCGGATGCGTTCA