mRNA_H-elongata_contig65102.14099.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE) HSP 1 Score: 370 bits (951), Expect = 8.580e-123 Identity = 178/254 (70.08%), Postives = 215/254 (84.65%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEVPICQALPQPG 765
+A+EDHRLITGI+GMIQDTASLAVFI+SIC RS NPTG+K ++YQFYTSPEDTV+G A+MC+WLMKT+NA ECGA C+VFSHGML+A F+PD+RI +LE+VFDVM MQQLQRA+G G ++ PNTL A Q S+QARLV SA PPY ITH NEAWTAL+GHT E+AK+ P TL+NGPAEAN+ L++LVQTC+G++ KRA M D+ VVTRD+RRL V+VQ YPLGT DG+TTHLLLVMEE+P+C LPQ G
Sbjct: 334 EAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRK-LKYQFYTSPEDTVVGSNALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRRLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTG 586
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: D7FRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN7_ECTSI) HSP 1 Score: 279 bits (714), Expect = 1.020e-91 Identity = 131/195 (67.18%), Postives = 161/195 (82.56%), Query Frame = 1
Query: 181 VMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEVPICQALPQPG 765
+MC+WLMKT+NA ECGA C+VFSHGML+A F+PD+RI +LE+VFDVM MQQLQRA+G G ++ PNTL A Q S+QARLV SA PPY ITH NEAWTAL+GHT E+AK+ P TL+NGPAEAN+ L++LVQTC+G++ KRA M D+ VVTRD+R+L V+VQ YPLGT DG+TTHLLLVMEE+P+C LPQ G
Sbjct: 41 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTG 235
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.120e-45 Identity = 97/236 (41.10%), Postives = 135/236 (57.20%), Query Frame = 1
Query: 22 RLITGIDGMIQDTASLAVFIQSI--CRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESA-LQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMA-DVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLL 717
R+I GID MI D ASLA+ ++S+ CR S +++++ Q+Y PED + + CRW+++TENA CGA CE + GML+A+++P H++ LEL FDVMGFMQQLQRA G F++ PNTL A AR + +A+PPY I HA+ AW L G+ +E+A LL GPA + V +GA R + +V T+ + YPL T DG TH L
Sbjct: 222 RMIVGIDAMIADVASLALMVESVGRCRPS-----ERRVQVQYYAGPEDAITSGDMLSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASGLEDFRVVPNTLAMAQAPCDADARFITTAEPPYLIVHASPAWCRLCGYASEEAVGRTAALLQGPATDRA------AVARFMGAVRARHCCSMEVVNYTKAGVPFANYIVAYPLST-DGRVTHYL 445
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK) HSP 1 Score: 165 bits (417), Expect = 2.030e-44 Identity = 97/252 (38.49%), Postives = 137/252 (54.37%), Query Frame = 1
Query: 13 EDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDH---------RINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGA-SFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTT-HLLLVMEEV 735
++ R + G+DG+++DTASL V +S+ R P + + ++Y + EDTV+ A+MCRW+++T NAV+CG CE+++HGML+A+F ++ +L LVFDVM FMQQLQR G F I PNT+ A Q + +ARLVC+A+PPY + H N AW AL G E+ PL L+G G +S+V +RA R +R V YPL H LLV EV
Sbjct: 234 QNMREVRGVDGVVKDTASLGVLTKSLGR----PGNSEDVALRYYVAKEDTVVVGRALMCRWMLRTVNAVQCGGLCELYNHGMLRAEFGEPSSDGPPGGGCKLRRLRLVFDVMSFMQQLQRCSGKACFHIVPNTVAMAKQGADEARLVCAAQPPYAVAHVNRAWQALFGQGLEEVYGRPLAFLDG----GGPGAAESVVARADDQFPLQRACSFLARANSRYRMAFPARVCAYPLAADPPRRPGHYLLVFHEV 477
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7R9ZM03_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM03_9STRA) HSP 1 Score: 136 bits (343), Expect = 7.230e-35 Identity = 92/255 (36.08%), Postives = 126/255 (49.41%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEV-PICQALPQP 762
Q + R I GIDGM+ DTASL V + S+ RS P + RY T E+ V+ +M RW+M TENA +CGA+ EV GML KF H+I LEL+FDVM M QL++A G F + PNT+++ + L+ A PY I N+ W + + EQ +L G EA +++L+ +KR A A V + R +PL T D TH L++ V PI LP P
Sbjct: 79 QVSKCQRTILGIDGMMADTASLHVLLNSLVDRSRYPNATIKFRYTLVT--EEAVVAGNQMMARWVMTTENAAQCGARMEVTKQGMLCCKFNSAHKIIGLELMFDVMALMLQLKQAAGSDTFSVVPNTVQTCQRNFDMPMLMMLADEPYTIVQVNKLWENMSNYQAEQVVGKSSCRILEG--EATDPTAVEALINEI---RYKRPASAMVVHYKKTGERFRNFFLAFPLST-DSRITHYLMLSTHVEPIATVLPTP 325
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S2A2E8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2E8_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.990e-33 Identity = 86/236 (36.44%), Postives = 123/236 (52.12%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTH 711
Q + R I GIDGM+ DTASL V + S+ RS P Q RY T ED+V+ +M RW+M T NA ECGA+ EV GML KF H+I LEL+FDVM FM QL+++ G F + PNT+++ + ++ A+ PY I N+ W + G+ E V + + + ++++L+ + +KR A A + TR RR + YPL T D TH
Sbjct: 327 QVSKCQRTILGIDGMMSDTASLHVLLNSLVDRSKYPNATVQFRYTLVT--EDSVVAGNQMMARWVMSTLNATECGARMEVSKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQSTGSDSFSVVPNTVQTCQRPFDTPMVMTLAERPYTIVQVNKLWEEVTGYRAEDV-VGKASCRELQGQETNRMDVENLMSS---VRYKRPASAVLVNYTRSGRRFRNYLNVYPLST-DSKITH 555
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S1D1F4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F4_CYCTE) HSP 1 Score: 134 bits (338), Expect = 4.200e-33 Identity = 89/245 (36.33%), Postives = 119/245 (48.57%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEV 735
Q + R I GIDGMI DTASL V + S+ RS P Q RY T ED V+ +M RW+M T NA + GA+ EV GML KF H+I LEL+FDVM FM QL++A G F + PNT+++ ++ ++ A+ PY I N+ W + G E +L G S E+ FKR A A + TR +R + YPL T D TH + + V
Sbjct: 120 QVSKCQRTILGIDGMISDTASLHVLLNSLIDRSRYPAASIQFRYTLVT--EDAVVAGNQMMARWVMSTVNATQFGARMEVAKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQAAGSETFSVVPNTVQTCQRSFSSPMVMTLAERPYTIVQVNKLWEDMTGFRAEDVVGKASCRILQGQETDRSAVEV-----LMSSVRFKRPASASLLNYTRAGKRFRNYLNVYPLST-DSKITHYVSLTAHV 356
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A6U2CPD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2CPD3_9STRA) HSP 1 Score: 129 bits (323), Expect = 9.550e-33 Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTE 501
Q R + GIDGMI D+ASL V + S+ RS +P+ IR+Q+ ED V+ +M RW+M T NAV+CGA+ EV GML KF ++I LEL+FDVM FM QL++A G F + PNT+++ + ++ +A+ PY I N+ W ++ G+ E
Sbjct: 80 QVARCQRTVMGIDGMISDSASLHVMLNSLVDRSRHPSAT--IRFQYTIVTEDAVVAGNCMMARWVMTTLNAVKCGARMEVSKRGMLCCKFNSSNKITGLELMFDVMAFMLQLKQASGTDSFAVVPNTVQTCQRPFDSPMVMTAAERPYTIKQVNKLWESMTGYAAE 243
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: W7TPI1_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPI1_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.600e-32 Identity = 78/207 (37.68%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 1 GQAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPG-AVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAP-DHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK----------VCPLTLLNGPAEANSDGELDSLVQT 585
G + R + GID I+DTAS V I S+ R T ++++R QFY+ + V+G G +MCRW M++ENAV CG Q E+ GML+A+F P + ++ +L ++FDVMG MQQL+R GG FQ P+TL+ A + + R+V + + P+ I NEAW G T E + +CP+ G E GE ++ V +
Sbjct: 357 GDVEQHARYVRGIDATIRDTASFTVLIDSLSR-----TYRERVRVQFYSEADYIVIGTGPTLMCRWTMRSENAVACGCQTELELCGMLQAEFEPREVKLKRLNVMFDVMGLMQQLRRMGGGALFQTAPSTLQMAEDPTEEPRIVFALQVPFRIRSINEAWMMHYGVTVEDCQNRCVVLERNPLCPVPGAGGGREGRGAGEAEAPVDS 558
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S2L2B1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B1_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.750e-31 Identity = 87/241 (36.10%), Postives = 125/241 (51.87%), Query Frame = 1
Query: 4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQ--ITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLL 717
Q R I G+D M+ D AS AVF+ SI R P G+ + Y+ T ++T + +M RW M+T NA +CGA E+ +GML KF H+I LE++FDVM FM Q++ AMG F + PNT+++ + ++ SA PY IT N+ W L G+ +E+ +L G N ELD L++ + FKR + A V T+ RR + YPL T D +H L
Sbjct: 482 QVSNCQRTIVGVDAMMNDVASNAVFLDSIVNRQRYPKGKIKFHYKLVT--DETPIAGNQLMARWSMETLNAKQCGAHNELHQNGMLFCKFNSSHKIVSLEMMFDVMAFMLQVKMAMGYDNFNDVVIPNTVQTCTKEFYYPMVMTSADRPYTITKVNQRWEKLTGYKSEEVVGKSSCLILQGNDTTNE--ELDLLMRPVL---FKRPSCAMVTNYTKSGRRYRGYLMLYPLST-DSIISHYL 714 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65102.14099.1 >prot_H-elongata_contig65102.14099.1 ID=prot_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp GQAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSback to top mRNA from alignment at H-elongata_contig65102:1417..3188- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65102.14099.1 ID=mRNA_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1772bp|location=Sequence derived from alignment at H-elongata_contig65102:1417..3188- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65102:1417..3188- >mRNA_H-elongata_contig65102.14099.1 ID=mRNA_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig65102:1417..3188- (Himanthalia elongata Himel1 dioecious)back to top |