mRNA_H-elongata_contig65097.14097.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65097.14097.1
Unique NamemRNA_H-elongata_contig65097.14097.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A6H5KPY6_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY6_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 1.150e-91
Identity = 238/520 (45.77%), Postives = 284/520 (54.62%), Query Frame = 1 
Query:   22 MVLRQDLSEQVQAEVGLNRRTEEVAQAASKLSARAARDIDRGGSGNAWXXXXXXXXXRRMGTVAG--------RTGTRNDLP-------QIELTNQVGESLTIPQKDSAALMEGMMLHRKGLACVARAGVSSAATVTKTTASGGDETVQNHPLSTGGTSPV----LPPPNDELGAEEDELRDDASPVEAAIGRTSDGLDERKESAPLGGGHNEKEG-ERGYEDRVGDVSTGGGTQEATNSTSTKVARGS-----CGRVGVETSPEGGEMLENVSVGAKRKG----------KGKLKAGESRVTHARVSCFFLHDQFQAKVHGTCEEREGGGRGGD--------VRIPPPRWGT-----EEYHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQKWRTVKFEDLRPKV 1437
            MVLRQDLSEQV+AE GL RRTEE  QAAS LSARAARD+  GG     XXXXXXXXX                R G R ++        +IELTNQ G+++ IP  DSAALMEGMMLHR+GLAC+ RA      T     + G         +  G   P      P       A         + V+AA G + DG    K  A  GGG     G E   E   G V+     Q+     + +  +G       G VG   + E  ++ E      +  G          +G   A  S  T A  +  F  +       G  +  E    G D                GT         T +A E  + QRE LGLL +A+EAFR+CDPKYLE VDNYAYLCLD+VWLLFLMKDM N+D+ASRML +VE+GF KAHG GLQRLTALKGE+CAEKLLYVRLHLLQGVVAFL+GDSGKAS LL+RAS E+KALKP+PALA RL+QKW TV+ E L+PKV
Sbjct:    1 MVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSARAARDMASGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNRPEVGGSEVKKLKIELTNQDGKAMAIPPDDSAALMEGMMLHRQGLACLRRA----RNTAPSRRSPGAGAAXXXXAVGDGHAPPAGAERAPASVQNKKARRRPQTGPQAAVKAAPGASEDGALSLKPPADRGGGSGRPGGWEERKESDCGSVTQAQAQQQQQGGMAEREGKGESSPPRAGLVGRAAAKE--QLPERTGAREESTGNEVFTRSPAPEGTAAAPGSPATDAPPA--FGEESGGVDSAGDGDVMEVDSDGNDQAGKGSXXXXXXXXXXGTMRGPRRAAPTLTAAEKLMAQREGLGLLMRADEAFRRCDPKYLEAVDNYAYLCLDVVWLLFLMKDMKNIDLASRMLAAVEKGFRKAHGEGLQRLTALKGEHCAEKLLYVRLHLLQGVVAFLRGDSGKASALLLRASGEAKALKPNPALACRLMQKWHTVRLEVLQPKV 512
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: D8LR71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR71_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 2.400e-88
Identity = 229/546 (41.94%), Postives = 280/546 (51.28%), Query Frame = 1 
Query:    1 VSPNKTIMVLRQDLSEQVQAEVGLNRRTEEVAQAASKLSARAARDIDRGGSGNAWXXXXXXXXXRRMGTVAG---------RTGTRNDLPQIELTNQVGESLTIPQKDSAALMEGMMLHRKGLACVARAGVSSAATVTKTTASGGDETVQNHPLSTGGTSPVLPPPNDELGAEEDELRD-----DASPVEAAIGRTSDGLDERKESAPLGGGHNEKEGERGYEDRVGDVSTGGGTQEATNSTSTKVARGSCGRVGVETSPEGGEMLENVSVGAKRKGKGKLKAGESRVTHARVSCFFLHDQFQAKVHGT---------CEEREGGGRGGDVRIPPPRWGTE--------------------------------------------EYHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQKWRTVKFEDLRPKV 1437
            ++P KTIMVLRQDLSEQV+AE GL RRTEE  QAAS LSAR              XXXXXXXXX                 R G R   P+IELTNQ GE++ IP  DSAALMEGMMLHR+GLAC+ RA  ++ ++ +                +  G +P         G +  + R        +  +AA G + +G    K  A  GGG                    GG +E   S    V           T              A+R+GKG+     + +     +   L ++  A+   T           E      G      PP +G E                                            +  T +A E  + QRE LGLL +A+EAFR+CDPKYLE VDNYAYLCLDIVWLLFLMKDM N+D+ASRML +VE+GF KAHG GLQRLTALKGE+CAEKLLYVRLHLLQGVVAFL+GDSG+AS LL+RAS E+KALKP+PALA RL+QKW TV+ E L+PKV
Sbjct:   61 ITPGKTIMVLRQDLSEQVEAEAGLTRRTEEAVQAASLLSARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNR---PEIELTNQDGEAMAIPPDDSAALMEGMMLHRQGLACLRRARNTAPSSRSPGAXXXXXXXXXXXXXTGDGHAPPAAAERAPAGVQNKKARHRPQTGPEAAAKAAPGASEEGALRLKSPADRGGGSGRP----------------GGWEERKESEGRSV-----------TQEXXXXXXXXXXXTAEREGKGESSPPRAGIVGRAAAKEQLPERTGAREESTGNEGFTPSPAPEGTAAAPGSPPTDAPPAFGEESGGVASAGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXTVRGPRRDGPTLTAAEKLMAQREGLGLLMRADEAFRRCDPKYLEAVDNYAYLCLDIVWLLFLMKDMKNIDLASRMLAAVEKGFRKAHGEGLQRLTALKGEHCAEKLLYVRLHLLQGVVAFLRGDSGEASALLLRASGEAKALKPNPALACRLMQKWHTVRLEVLQPKV 576
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A835Z994_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z994_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.960e-23
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  982 LRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQG 1302
            L+  + EAL  L +A+ +FR C  +Y   VDN+A++CLD  WLLFL +D+ NL   S +L     GF ++HG  L RL ALKG++C E  LY RLHLLQGVVA+L G
Sbjct:  193 LKEARAEALQYLLEADTSFRSCSEEYRRHVDNHAHVCLDAAWLLFLTRDLSNLQQTSALLTCAAEGFARSHGQDLNRLRALKGDHCPEVALYARLHLLQGVVAYLAG 299
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A1I8NVK4_STOCA (Uncharacterized protein n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8NVK4_STOCA)

HSP 1 Score: 107 bits (268), Expect = 2.890e-21
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:  913 GGDVRIPPPR-----WGTEEYHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            G  V +PP        G   Y    A   R    EAL LL +++E F  C+ K+LE VDNYA + LDIVW    +K++  L  A R L   E+ F +++G  LQRL  LKGE C EK L +RLHLLQGVV F Q    +A   LI A  E +ALK D      L++
Sbjct:  204 GNPVFLPPAENRALLMGMSFYEKARAAMKREQFDEALILLLESDEKFVTCNSKFLESVDNYALVNLDIVWCYLCLKNVTQLPDAQRRLDICEKSFRRSYGDNLQRLITLKGEGCPEKALIMRLHLLQGVVLFHQNRRNEAYDKLITAGTELEALKVDDGSVIALME 369
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A1I8N5T3_MUSDO (Uncharacterized protein n=2 Tax=Musca domestica TaxID=7370 RepID=A0A1I8N5T3_MUSDO)

HSP 1 Score: 107 bits (268), Expect = 2.930e-21
Identity = 70/166 (42.17%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:  913 GGDVRIPPPR-----WGTEEYHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            G  V +PP            Y    A   R    EAL LL +++E F  C+ K+LE VDNYA + LDIVW    +K++  L  A R L   E+ F +++G  LQRL  LKG  CAEK L +RLHLLQGVV F Q    +A   LI A  E  ALK D +L   L++
Sbjct:  204 GNPVFLPPAENRALLMAMSYYEKARAAMKREHYDEALILLLESDEKFITCNSKFLEAVDNYALVNLDIVWCYLCLKNVTQLPDAQRRLDICEKSFRRSYGENLQRLITLKGNGCAEKALIMRLHLLQGVVLFHQNRRNEAYEKLIVAGTELDALKVDDSLVVALME 369
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A1A9WA10_9MUSC (Uncharacterized protein n=1 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9WA10_9MUSC)

HSP 1 Score: 106 bits (264), Expect = 9.050e-21
Identity = 65/132 (49.24%), Postives = 78/132 (59.09%), Query Frame = 1 
Query: 1000 EALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            EAL LL +A+E F  C+ K+LE VDNYA L LDIVW    +K++  L  A R L   E  F +++G  LQRL  LKGE CAEK L +RLHLLQGVV F Q    +AS     A  E  ALK D      LV+
Sbjct:  237 EALILLLEADEKFTACNSKFLEAVDNYALLNLDIVWCYLCLKNVTQLPDAQRRLDICENNFRRSYGENLQRLINLKGEGCAEKALIMRLHLLQGVVLFHQNQHNEASEKFEIAENELLALKVDDKSIETLVE 368
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A2K1KV21_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KV21_PHYPA)

HSP 1 Score: 105 bits (261), Expect = 1.920e-20
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:  997 REALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            +EAL +L  +EE+F  CD K+LE VDN A L +D VW LF+++D+  L +A   L     G  ++HGP L+RL  L+G +C E  LYVRL LL+GVVA+  G +  A   L+ A E+ + L+      A L Q
Sbjct:  182 QEALEVLGMSEESFSLCDRKFLEAVDNVALLQIDTVWCLFMLRDIERLSVARERLARARDGLKRSHGPNLERLRVLQGGFCPELALYVRLELLEGVVAYHSGQTDAARASLLSAQEKFEQLQISDEQVAALAQ 314
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A1B0FHD1_GLOMM (Uncharacterized protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0FHD1_GLOMM)

HSP 1 Score: 103 bits (258), Expect = 5.210e-20
Identity = 63/132 (47.73%), Postives = 78/132 (59.09%), Query Frame = 1 
Query: 1000 EALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            EAL LL +A+E F  C+ K+LE VDNYA + LDIVW    +K++  L  A R L   E  F +++G  LQRL  LKG+ CAEK L +RLHLLQGVV F Q    +A   L  A  E  ALK D      LV+
Sbjct:  237 EALILLLEADEKFTACNSKFLEAVDNYALINLDIVWCYLCLKNVTQLPDAQRRLEICENSFRRSYGENLQRLITLKGDGCAEKALIMRLHLLQGVVLFHQNRRNEALEKLDIAENELLALKVDDKSIETLVE 368
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A0L0CP88_LUCCU (Uncharacterized protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0CP88_LUCCU)

HSP 1 Score: 103 bits (257), Expect = 7.100e-20
Identity = 64/146 (43.84%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:  958 YHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLVQ 1395
            Y    A   R    EAL LL +A+E F  C+ K+LE VDNYA + LDIVW    +K++  L  A R L   E+ F +++G   QRL +LKG  C EK L +RLHLLQGVV F Q    +A      A  E  +LK D +L A LV+
Sbjct:  224 YEKARAAMKRDHYDEALVLLLEADEKFITCNSKFLEAVDNYALVNLDIVWCYLCLKNVTQLPDAQRRLELCEKSFRRSYGENFQRLISLKGSACPEKALIMRLHLLQGVVLFHQNRRNEAYEKFAIAETELGSLKIDDSLVAALVE 369
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BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Match: A0A6S7GL12_PARCT (NEDD8 ultimate buster 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GL12_PARCT)

HSP 1 Score: 102 bits (255), Expect = 1.150e-19
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1 
Query: 1000 EALGLLFKAEEAFRKCDPKYLECVDNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTALKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDPALAARLV 1392
            EAL LL  A+E FR+C  + L  VDNYA LCLDIVW    +K + +L  A  ML   E    K++G  L+RL +L G    EK+LYVRL+LLQ + AF + D+ +AS LL +  +E   LK D A  ++++
Sbjct:  220 EALPLLLGADEEFRQCRSEVLNAVDNYAILCLDIVWCYLQLKSIKDLPNAEEMLKKCEACLKKSYGENLERLISLTGSSAKEKVLYVRLNLLQAICAFHKADTTQASQLLDKVEKEINNLKVDDATLSQMI 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65097.14097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPY6_9PHAE1.150e-9145.77UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LR71_ECTSI2.400e-8841.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z994_9STRA6.960e-2350.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1I8NVK4_STOCA2.890e-2142.17Uncharacterized protein n=1 Tax=Stomoxys calcitran... [more]
A0A1I8N5T3_MUSDO2.930e-2142.17Uncharacterized protein n=2 Tax=Musca domestica Ta... [more]
A0A1A9WA10_9MUSC9.050e-2149.24Uncharacterized protein n=1 Tax=Glossina brevipalp... [more]
A0A2K1KV21_PHYPA1.920e-2042.86Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A1B0FHD1_GLOMM5.210e-2047.73Uncharacterized protein n=6 Tax=Glossina TaxID=739... [more]
A0A0L0CP88_LUCCU7.100e-2043.84Uncharacterized protein n=3 Tax=Lucilia TaxID=7374... [more]
A0A6S7GL12_PARCT1.150e-1944.27NEDD8 ultimate buster 1-like n=1 Tax=Paramuricea c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65097contigH-elongata_contig65097:565..3326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue3.2e-78
Seed eggNOG ortholog2880.D8LR71
Preferred nameNUB1
GOsGO:0002376,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010604,GO:0016567,GO:0019222,GO:0019538,GO:0019941,GO:0030162,GO:0030163,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0034097,GO:0034341,GO:0034612,GO:0036211,GO:0042176,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.positive regulation of ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2561@1,KOG2561@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-06_004130.1
Exons5
Model size1437
Cds size1416
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65097.14097.1prot_H-elongata_contig65097.14097.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65097 586..3326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.092019-UTR-H-elongata_contig65097:564..5851622931037.092019-UTR-H-elongata_contig65097:564..585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65097 565..585 +
1691679671.7558663-UTR-H-elongata_contig65097:564..5851691679671.7558663-UTR-H-elongata_contig65097:564..585Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65097 565..585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.1077516-CDS-H-elongata_contig65097:585..8101622931037.1077516-CDS-H-elongata_contig65097:585..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 586..810 +
1691679671.7656455-CDS-H-elongata_contig65097:585..8101691679671.7656455-CDS-H-elongata_contig65097:585..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 586..810 +
1622931037.1197176-CDS-H-elongata_contig65097:1267..19521622931037.1197176-CDS-H-elongata_contig65097:1267..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 1268..1952 +
1691679671.7752964-CDS-H-elongata_contig65097:1267..19521691679671.7752964-CDS-H-elongata_contig65097:1267..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 1268..1952 +
1622931037.1336079-CDS-H-elongata_contig65097:2170..23351622931037.1336079-CDS-H-elongata_contig65097:2170..2335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 2171..2335 +
1691679671.791413-CDS-H-elongata_contig65097:2170..23351691679671.791413-CDS-H-elongata_contig65097:2170..2335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 2171..2335 +
1622931037.149183-CDS-H-elongata_contig65097:2616..27981622931037.149183-CDS-H-elongata_contig65097:2616..2798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 2617..2798 +
1691679671.8068583-CDS-H-elongata_contig65097:2616..27981691679671.8068583-CDS-H-elongata_contig65097:2616..2798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 2617..2798 +
1622931037.1635554-CDS-H-elongata_contig65097:3167..33261622931037.1635554-CDS-H-elongata_contig65097:3167..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 3168..3326 +
1691679671.8168619-CDS-H-elongata_contig65097:3167..33261691679671.8168619-CDS-H-elongata_contig65097:3167..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65097 3168..3326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65097.14097.1

>prot_H-elongata_contig65097.14097.1 ID=prot_H-elongata_contig65097.14097.1|Name=mRNA_H-elongata_contig65097.14097.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=472bp
MVLRQDLSEQVQAEVGLNRRTEEVAQAASKLSARAARDIDRGGSGNAWGG
WGRGGRGRRMGTVAGRTGTRNDLPQIELTNQVGESLTIPQKDSAALMEGM
MLHRKGLACVARAGVSSAATVTKTTASGGDETVQNHPLSTGGTSPVLPPP
NDELGAEEDELRDDASPVEAAIGRTSDGLDERKESAPLGGGHNEKEGERG
YEDRVGDVSTGGGTQEATNSTSTKVARGSCGRVGVETSPEGGEMLENVSV
GAKRKGKGKLKAGESRVTHARVSCFFLHDQFQAKVHGTCEEREGGGRGGD
VRIPPPRWGTEEYHTPSATELRLVQREALGLLFKAEEAFRKCDPKYLECV
DNYAYLCLDIVWLLFLMKDMGNLDMASRMLLSVERGFLKAHGPGLQRLTA
LKGEYCAEKLLYVRLHLLQGVVAFLQGDSGKASGLLIRASEESKALKPDP
ALAARLVQKWRTVKFEDLRPKV
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mRNA from alignment at H-elongata_contig65097:565..3326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65097.14097.1 ID=mRNA_H-elongata_contig65097.14097.1|Name=mRNA_H-elongata_contig65097.14097.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2762bp|location=Sequence derived from alignment at H-elongata_contig65097:565..3326+ (Himanthalia elongata Himel1 dioecious)
GTCAGTCCGAACAAGACCATTATGGTTTTGCGCCAAGACCTCTCGGAGCA
AGTCCAGGCGGAGGTCGGGCTAAACCGAAGAACAGAAGAGGTGGCGCAGG
CCGCCTCAAAGCTCTCCGCGCGTGCCGCCCGCGACATCGACAGGGGCGGG
AGTGGGAACGCGTGGGGTGGGTGGGGGCGAGGAGGACGCGGCCGGAGAAT
GGGCACCGTGGCGGGGCGTACCGGCACGCGCAACGATCTCCCCCAGGTGT
TCAACTCACCTCCAACTTCGGCCTTTTTCTTGCGTGTGTACACATTCTTG
CGGATGGTGGTCTGTTTTATATCGGTCGAGGCGGGACTTGTCTATACGAA
AGTCGGGTACGGTGGGCGATATTGTATCTCGCGCTGGGTGTGGGATGGGC
GAACCCTCGAACCTAACCGCGGTGTACGTTACTGGGCACATCAAAATGGG
CCTAGGAGAAAAACAATAAAGAGCAGGGCAAAGCGAAGCCCCGTCTGGGA
GCGGTCGTGTAATGCCTAGAGGACAAGCGGTCATCTTATGTCCCCGCAAT
AGACGGCGTCGGCGTCAACGTGCACCTGCGCGGAACGTCGCTTTGGTGTG
AATTTTTCGATTGGAGAACATAAATAAAAATAGAAATAGAAAGTGGATGG
AGCCTATTCAGCTGTCCACACGCTTTCTTTTTGCGTCTCTTCGCCCTCCG
TAGATCGAACTAACAAACCAGGTCGGAGAGTCGCTGACGATTCCCCAGAA
GGACTCTGCGGCTCTTATGGAGGGGATGATGCTTCACCGCAAGGGCCTTG
CGTGCGTTGCGCGCGCGGGAGTATCGTCTGCCGCGACGGTCACCAAAACG
ACCGCCTCCGGAGGCGACGAGACAGTCCAGAATCATCCTCTGTCCACGGG
GGGGACGTCACCGGTGCTCCCCCCTCCCAATGACGAGCTTGGAGCGGAGG
AAGATGAACTTCGCGATGATGCCTCGCCGGTGGAAGCCGCGATAGGTCGT
ACGAGCGACGGCCTGGACGAGCGTAAGGAATCCGCTCCGCTTGGCGGGGG
TCACAACGAGAAGGAAGGAGAGAGGGGTTACGAAGATAGAGTGGGCGACG
TGTCTACAGGCGGTGGTACCCAGGAAGCCACAAACTCCACTTCCACGAAA
GTCGCGAGAGGGAGCTGCGGGCGCGTCGGAGTCGAGACATCGCCGGAGGG
TGGTGAAATGCTAGAAAATGTTTCAGTTGGTGCGAAGAGAAAGGGGAAAG
GCAAGCTTAAGGCGGGTGAGTCTCGCGTCACCCACGCACGCGTGTCGTGC
TTTTTTCTCCATGATCAATTCCAAGCAAAAGTACATGGCACGTGTGAAGA
AAGAGAGGGGGGGGGGAGGGGGGGCGACGTACGAATCCGTTTGGTGCTTT
CACGCTTTCATTCTCTCCTCATTTTTTTTTGACAGGACAAAAGCGTTGAG
CATTACCGTGCTCCCAACGTTCAAGTTGCGTGGCACATGGTCGATTTCAC
GTCGCACTGCAATCCACACATTGCGGACGTTTGCGCTCTTACTTTTGCTT
TATCCCCCCCCCCTCCTTAATTTCTTTACCCATCTTGCCTCGATTCTTCT
GGCAAGCACCCCCGCGGTGGGGGACGGAAGAATACCACACACCGTCCGCA
ACAGAGTTGCGCTTGGTTCAGCGAGAAGCACTAGGCCTGCTGTTCAAGGC
GGAGGAAGCCTTCCGGAAGTGTGACCCGAAGTACCTCGAGTGCGTCGACA
ATTACGCCTACCTCTGCCTCGGTGAGTTGAAACGAGAATAGGCGAGCTCT
CTGGTGCCGCGATCATGGACATTGCGATCGTAGGCGGTCATAGAATTTTC
TAGCGTTCATGTAATGAAGGGTCCCTTTGCCTGGTATGTTATGTGTATGT
CGCTGTCGTACTTCAAAGCTCTCGAGCAGGGCTCGAGTCATCCTACTAAA
TAGCGGAGCTAAAAGAGTGCTTCCGCCTTTTTGCGTAAACCCCCCCCCGG
ATTGCCCGGCCTGCGCGCCTCGGAAAATCTCACGATTTCGGTGCCCGTGC
AGACATCGTGTGGCTGCTGTTCCTGATGAAGGACATGGGCAACCTGGACA
TGGCGTCGCGCATGTTGTTGTCCGTGGAGAGAGGATTCCTGAAGGCGCAC
GGTCCAGGGCTGCAGCGGCTGACCGCGCTTAAGGGGGAGTATTGTGCCGA
GAAGCTGCTGTACGTCAGACTGCATTTGTTGCAAGTAAGTGCACATTGTC
CGCCGCCCTTTTTGTGTGCCTTGCTGATTGCCGCTTCTTTATCTGTAGCG
GGCTCGGTAAAAAAATGTACACCGACCTTCTCATTAAACCCATCGCGTTC
ACGAATGCTGCTGCGCTGGTAGGAATTAAGCGACATGTCTCGCTTGCGCT
ACACACCTCTTCGTGGAACATGGGTGGGCCCGGTCGAAAGACAGTTCACG
CGCTCCCTCCCTTGTGGCTCGGAAAGCGTCAGTGTAGCGCTCAAACAGCC
CGTACGCGAAATACCCGCGGTGACCTCAAGCCAGGAGGTGCCCCGTCCGT
TCGCGTGATGTCTTATTAAACCCACCCACAAACCATGTCGCATGACGTGT
CAGGGAGTAGTGGCGTTTCTTCAGGGGGATTCGGGTAAGGCTTCGGGATT
GCTCATCCGCGCCAGCGAAGAATCCAAGGCTCTGAAGCCCGATCCGGCTC
TTGCCGCGCGCCTTGTGCAAAAGTGGCGCACCGTGAAGTTTGAAGACCTG
CGGCCAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig65097:565..3326+

>mRNA_H-elongata_contig65097.14097.1 ID=mRNA_H-elongata_contig65097.14097.1|Name=mRNA_H-elongata_contig65097.14097.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2832bp|location=Sequence derived from alignment at H-elongata_contig65097:565..3326+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTTGCGCCAAGACCTCTCGGAGCAAGTCCAGGCGGAGGTCGGGCT
AAACCGAAGAACAGAAGAGGTGGCGCAGGCCGCCTCAAAGCTCTCCGCGC
GTGCCGCCCGCGACATCGACAGGGGCGGGAGTGGGAACGCGTGGGGTGGG
TGGGGGCGAGGAGGACGCGGCCGGAGAATGGGCACCGTGGCGGGGCGTAC
CGGCACGCGCAACGATCTCCCCCAGATGGTTTTGCGCCAAGACCTCTCGG
AGCAAGTCCAGGCGGAGGTCGGGCTAAACCGAAGAACAGAAGAGGTGGCG
CAGGCCGCCTCAAAGCTCTCCGCGCGTGCCGCCCGCGACATCGACAGGGG
CGGGAGTGGGAACGCGTGGGGTGGGTGGGGGCGAGGAGGACGCGGCCGGA
GAATGGGCACCGTGGCGGGGCGTACCGGCACGCGCAACGATCTCCCCCAG
ATCGAACTAACAAACCAGGTCGGAGAGTCGCTGACGATTCCCCAGAAGGA
CTCTGCGGCTCTTATGGAGGGGATGATGCTTCACCGCAAGGGCCTTGCGT
GCGTTGCGCGCGCGGGAGTATCGTCTGCCGCGACGGTCACCAAAACGACC
GCCTCCGGAGGCGACGAGACAGTCCAGAATCATCCTCTGTCCACGGGGGG
GACGTCACCGGTGCTCCCCCCTCCCAATGACGAGCTTGGAGCGGAGGAAG
ATGAACTTCGCGATGATGCCTCGCCGGTGGAAGCCGCGATAGGTCGTACG
AGCGACGGCCTGGACGAGCGTAAGGAATCCGCTCCGCTTGGCGGGGGTCA
CAACGAGAAGGAAGGAGAGAGGGGTTACGAAGATAGAGTGGGCGACGTGT
CTACAGGCGGTGGTACCCAGGAAGCCACAAACTCCACTTCCACGAAAGTC
GCGAGAGGGAGCTGCGGGCGCGTCGGAGTCGAGACATCGCCGGAGGGTGG
TGAAATGCTAGAAAATGTTTCAGTTGGTGCGAAGAGAAAGGGGAAAGGCA
AGCTTAAGGCGGGTGAGTCTCGCGTCACCCACGCACGCGTGTCGTGCTTT
TTTCTCCATGATCAATTCCAAGCAAAAGTACATGGCACGTGTGAAGAAAG
AGAGGGGGGGGGGAGGGGGGGCGACGTACGAATCCATCGAACTAACAAAC
CAGGTCGGAGAGTCGCTGACGATTCCCCAGAAGGACTCTGCGGCTCTTAT
GGAGGGGATGATGCTTCACCGCAAGGGCCTTGCGTGCGTTGCGCGCGCGG
GAGTATCGTCTGCCGCGACGGTCACCAAAACGACCGCCTCCGGAGGCGAC
GAGACAGTCCAGAATCATCCTCTGTCCACGGGGGGGACGTCACCGGTGCT
CCCCCCTCCCAATGACGAGCTTGGAGCGGAGGAAGATGAACTTCGCGATG
ATGCCTCGCCGGTGGAAGCCGCGATAGGTCGTACGAGCGACGGCCTGGAC
GAGCGTAAGGAATCCGCTCCGCTTGGCGGGGGTCACAACGAGAAGGAAGG
AGAGAGGGGTTACGAAGATAGAGTGGGCGACGTGTCTACAGGCGGTGGTA
CCCAGGAAGCCACAAACTCCACTTCCACGAAAGTCGCGAGAGGGAGCTGC
GGGCGCGTCGGAGTCGAGACATCGCCGGAGGGTGGTGAAATGCTAGAAAA
TGTTTCAGTTGGTGCGAAGAGAAAGGGGAAAGGCAAGCTTAAGGCGGGTG
AGTCTCGCGTCACCCACGCACGCGTGTCGTGCTTTTTTCTCCATGATCAA
TTCCAAGCAAAAGTACATGGCACGTGTGAAGAAAGAGAGGGGGGGGGGAG
GGGGGGCGACGTACGAATCCCACCCCCGCGGTGGGGGACGGAAGAATACC
ACACACCGTCCGCAACAGAGTTGCGCTTGGTTCAGCGAGAAGCACTAGGC
CTGCTGTTCAAGGCGGAGGAAGCCTTCCGGAAGTGTGACCCGAAGTACCT
CGAGTGCGTCGACAATTACGCCTACCTCTGCCTCGCACCCCCGCGGTGGG
GGACGGAAGAATACCACACACCGTCCGCAACAGAGTTGCGCTTGGTTCAG
CGAGAAGCACTAGGCCTGCTGTTCAAGGCGGAGGAAGCCTTCCGGAAGTG
TGACCCGAAGTACCTCGAGTGCGTCGACAATTACGCCTACCTCTGCCTCG
ACATCGTGTGGCTGCTGTTCCTGATGAAGGACATGGGCAACCTGGACATG
GCGTCGCGCATGTTGTTGTCCGTGGAGAGAGGATTCCTGAAGGCGCACGG
TCCAGGGCTGCAGCGGCTGACCGCGCTTAAGGGGGAGTATTGTGCCGAGA
AGCTGCTGTACGTCAGACTGCATTTGTTGCAAACATCGTGTGGCTGCTGT
TCCTGATGAAGGACATGGGCAACCTGGACATGGCGTCGCGCATGTTGTTG
TCCGTGGAGAGAGGATTCCTGAAGGCGCACGGTCCAGGGCTGCAGCGGCT
GACCGCGCTTAAGGGGGAGTATTGTGCCGAGAAGCTGCTGTACGTCAGAC
TGCATTTGTTGCAAGGAGTAGTGGCGTTTCTTCAGGGGGATTCGGGTAAG
GCTTCGGGATTGCTCATCCGCGCCAGCGAAGAATCCAAGGCTCTGAAGCC
CGATCCGGCTCTTGCCGCGCGCCTTGTGCAAAAGTGGCGCACCGTGAAGT
TTGAAGACCTGCGGCCAAAGGTAGGAGTAGTGGCGTTTCTTCAGGGGGAT
TCGGGTAAGGCTTCGGGATTGCTCATCCGCGCCAGCGAAGAATCCAAGGC
TCTGAAGCCCGATCCGGCTCTTGCCGCGCGCCTTGTGCAAAAGTGGCGCA
CCGTGAAGTTTGAAGACCTGCGGCCAAAGGTA
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