mRNA_H-elongata_contig65013.14090.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65013.14090.1
Unique NamemRNA_H-elongata_contig65013.14090.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 8.970e-52
Identity = 84/114 (73.68%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:   91 DREAEEADADFHKMHMLNYRSLEFESEVLECPWECSGCLRRSTSCGCPEGFPAWLDSDAGQARQAQLGKYTCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHAL 432
            D EAEEAD DF KMH  NYR+++ E E+LECPW C GCLRRSTSCGCPEGFPAWLDSD GQARQ+   +Y C  G A CSFCRRGPGHLILLGEWARD+QAI +G  PPSS AL
Sbjct:  140 DAEAEEADPDFQKMHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQARQSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRAL 253
[Close]
BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.450e-13
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  292 GKYTCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHAL 432
            G Y C  G A CSFCRRGPGHLILLGEWARD++AI +G  PPS+ AL
Sbjct:   12 GMYNCRAGAAGCSFCRRGPGHLILLGEWARDVKAISEGIPPPSTRAL 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN85_ECTSI8.970e-5273.68Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
A0A6H5JK20_9PHAE9.450e-1370.21Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65013contigH-elongata_contig65013:743..2624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone deacetylase with CXXC-type zinc finger domain
Ec32 orthologEc-05_003910.1
Exons3
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65013.14090.1prot_H-elongata_contig65013.14090.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65013 744..2624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.2398813-CDS-H-elongata_contig65013:743..8001622931036.2398813-CDS-H-elongata_contig65013:743..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 744..800 -
1691679671.4189382-CDS-H-elongata_contig65013:743..8001691679671.4189382-CDS-H-elongata_contig65013:743..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 744..800 -
1622931036.2632294-CDS-H-elongata_contig65013:2064..23171622931036.2632294-CDS-H-elongata_contig65013:2064..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 2065..2317 -
1691679671.4273381-CDS-H-elongata_contig65013:2064..23171691679671.4273381-CDS-H-elongata_contig65013:2064..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 2065..2317 -
1622931036.2819562-CDS-H-elongata_contig65013:2487..26241622931036.2819562-CDS-H-elongata_contig65013:2487..2624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 2488..2624 -
1691679671.4361472-CDS-H-elongata_contig65013:2487..26241691679671.4361472-CDS-H-elongata_contig65013:2487..2624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65013 2488..2624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65013.14090.1

>prot_H-elongata_contig65013.14090.1 ID=prot_H-elongata_contig65013.14090.1|Name=mRNA_H-elongata_contig65013.14090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
GREERGRGGGGEGVLIGIPEDSVDDVLSQADREAEEADADFHKMHMLNYR
SLEFESEVLECPWECSGCLRRSTSCGCPEGFPAWLDSDAGQARQAQLGKY
TCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHALPFPPQ
back to top

mRNA from alignment at H-elongata_contig65013:743..2624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65013.14090.1 ID=mRNA_H-elongata_contig65013.14090.1|Name=mRNA_H-elongata_contig65013.14090.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1882bp|location=Sequence derived from alignment at H-elongata_contig65013:743..2624- (Himanthalia elongata Himel1 dioecious)
GGAAGAGAGGAGAGGGGAAGAGGTGGCGGTGGTGAGGGAGTGCTTATTGG
CATCCCCGAGGACAGCGTTGACGATGTCTTGAGTCAAGCGGACCGGGAGG
CCGAGGAGGCCGATGCAGACTTCCACAAGATGCACATGTGAGTTCCCTTC
CCCCTGCCCCCTCGTCCTTATCAGGCCTTCCGGTCGCTGGGATAACGCCT
CAGTAGTAAGAACCGAGTCGCGTTTCATAATGTTTGGTTTGCTTCTATTT
CGTGACGTATGTCTGTCTGTTTGTCTCTTGTCTCTGATACATACGAAATG
AATAAAGGCTTAACTACCGTTCGTTGGAGTTCGAATCCGAGGTGCTGGAG
TGTCCTTGGGAGTGCAGTGGCTGTCTCCGGAGATCGACCAGCTGCGGCTG
TCCAGAAGGGTTTCCCGCGTGGCTCGACAGCGACGCGGGCCAGGCGCGCC
AAGCGCAGCTGGGAAAATACACGTGTCTTGGCGGACCTGCGGAGTGCAGC
TTCTGCCGGCGAGGGCCTGGTCATCTCATTCTTCTCGGGGAATGGGCCAG
GGATATGCAGGTGCGGATGCAGGTCGGGAAGATGGCAAATGGGGGAGTGG
GGTGCGGGGTATCTGACTTGATGCGCCTGCTGGCTGGGCAGCTGTTTTGA
TTGGTTGACTGGCGCGGCGATTGCGTTTGATTGGTGGGGTGGCGCGGCAT
GCTGCTTTGATTGGTCGATTGGTACGGCGGATGTGTTTTGGTGACTTGAA
TGATTGCGTGGCGTGGCAGTGTTTTGGTGACTTGACTGATTGCGTGGCGT
GGCAGTGCTTTGGCTGGTCGGATGGCGTAGCAGCTGTTTTGATTGGTCTG
CTGGTGTGGCATTCAGTTTGACAAACTTCCCATAAGTCCGGTAGTTGAAG
AAATGAGCGTAAGACAGCCGGGAATAGGTGTCCACCCTTTTACCATTTCC
CTCCTTTTAACCCCTATGAAACTCGATTTGTTTTTTTACACACTAAATTC
AATATAAAACTTGAAATCCAGTTCCTGTCTAGTATAGGCGGATAGTGTAG
TGGGATGAAAACCCCCGATTTGGGGGAACCATCTTTTCGGCGTTTATTTA
ATGACGAAGGTTTTAATTTTAACAGCCCCCCCCCCCCGTCTAGGAGTAGA
GCTAGCTTTTCAGAAGAAAGGAGGCCGATTTCTGTTTACGGCCGTGGTGA
TAATTACAATGTTTGTTGTATAAATCGTCGAAGATGATTATTCTCGTCTC
TTCGCGACCTCCAATTTTTCGATAATGGCGCCGTCTTCCGTTTGAAAGAA
GAGGTTGCTGCTGGGAGGCGACGATGTGTTTTATGTGTGTGTTAGTATGG
GGGGATGGGGGAAGGTTTAGTGTAGGCAAAAAAACGTGACTTTTTGAAAA
ACGTCTTGGTATTATTCCTTGGTTTTAAACCAACCAACCCTCGTTTATAA
TGTATTTTGTTTTTTAAAATCATGAACTCATTCCAACCCTCTAAACATCC
ACACCTTCTTAGCGCCGTGGGAGGTGCAATCGAGGAGATCTATTGGTGTG
CTTTATTGTGCAGGTGTCCAAAGGAGAATATATATATATTAGGATCAGCC
TGCTTACAGCCTGCTTACAGCCTGCTTACCGACCTTCCCTGGTAATGTAT
GTTGCATACTCTCCCTCGCGTTGGTTTCATGCTTCCCCCCTCTCGCCCCT
CCCTTCCCATCCCTCTATGAAAGCCAGGCCGTTCGTGACGGAAGCATGCC
TCCTCTTCCTCGGTCTGATTTCATGCTTCCCCGCCCCCCTCGCCCTTCCC
TTTCCACCCCTCTATGAAAACCAGGCCATTCGCGACGGAAACATGCCCCC
GAGCTCCCACGCGCTCCCCTTCCCACCCCAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65013:743..2624-

>mRNA_H-elongata_contig65013.14090.1 ID=mRNA_H-elongata_contig65013.14090.1|Name=mRNA_H-elongata_contig65013.14090.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig65013:743..2624- (Himanthalia elongata Himel1 dioecious)
GGAAGAGAGGAGAGGGGAAGAGGTGGCGGTGGTGAGGGAGTGCTTATTGG
CATCCCCGAGGACAGCGTTGACGATGTCTTGAGTCAAGCGGACCGGGAGG
CCGAGGAGGCCGATGCAGACTTCCACAAGATGCACATGGAAGAGAGGAGA
GGGGAAGAGGTGGCGGTGGTGAGGGAGTGCTTATTGGCATCCCCGAGGAC
AGCGTTGACGATGTCTTGAGTCAAGCGGACCGGGAGGCCGAGGAGGCCGA
TGCAGACTTCCACAAGATGCACATGCTTAACTACCGTTCGTTGGAGTTCG
AATCCGAGGTGCTGGAGTGTCCTTGGGAGTGCAGTGGCTGTCTCCGGAGA
TCGACCAGCTGCGGCTGTCCAGAAGGGTTTCCCGCGTGGCTCGACAGCGA
CGCGGGCCAGGCGCGCCAAGCGCAGCTGGGAAAATACACGTGTCTTGGCG
GACCTGCGGAGTGCAGCTTCTGCCGGCGAGGGCCTGGTCATCTCATTCTT
CTCGGGGAATGGGCCAGGGATATGCAGGCTTAACTACCGTTCGTTGGAGT
TCGAATCCGAGGTGCTGGAGTGTCCTTGGGAGTGCAGTGGCTGTCTCCGG
AGATCGACCAGCTGCGGCTGTCCAGAAGGGTTTCCCGCGTGGCTCGACAG
CGACGCGGGCCAGGCGCGCCAAGCGCAGCTGGGAAAATACACGTGTCTTG
GCGGACCTGCGGAGTGCAGCTTCTGCCGGCGAGGGCCTGGTCATCTCATT
CTTCTCGGGGAATGGGCCAGGGATATGCAGGCCATTCGCGACGGAAACAT
GCCCCCGAGCTCCCACGCGCTCCCCTTCCCACCCCAGGCCATTCGCGACG
GAAACATGCCCCCGAGCTCCCACGCGCTCCCCTTCCCACCCCAG
back to top