mRNA_H-elongata_contig6499.14088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6499.14088.1
Unique NamemRNA_H-elongata_contig6499.14088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.000e-30
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
            ++P+TSR YR NP +A QV+A++ +YL  GL++   SP++SP+VV  K SG +  T ++ +L     + Q+PIPR D+ LD L     +S FDM S FH I V     PLT F T+SGL+E L +P G+S +PG+F + +++ +++ H
Sbjct:  270 SAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLH 417          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5LRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRK5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.920e-30
Identity = 62/148 (41.89%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
            ++P+ SR YR NP +A QV+A++ +YL VGL++   SP++SP+VV  K SG +  T ++ +L     + Q+PIPR D  LD L     +S FDM S FH I V     PLT F T+SGL+E L +P G+S +PG+F + +++ +++ H
Sbjct:   27 SAPVASRPYRANPPVAKQVDAILDQYLAVGLIQHSTSPYSSPLVVMPKKSGSVRITVNYRKLNQLCALIQLPIPRVDYTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLH 174          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.540e-28
Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQD 531
            ++P+TSR Y  NP +A QV+A++ + L  GL++   SP++SP+VV  K SG +  T ++ +L     + Q+PIPR D+ LD L     +S FDM S FH I V  +   LT F T+SGL+E L +P G+S +PG+F + +++ +++
Sbjct:    8 SAPVTSRPYHVNPPVAKQVDAILDQCLAAGLIQHSTSPYSSPLVVIPKKSGGVHITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRETIHLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKN 153          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5K5K4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5K4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 5.110e-28
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   88 NMNSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYF 501
            + ++P+TSR YR NP +A QV+A++ +YL   L+++  SP++SP+VV  K  G +  T ++ +L     + Q+PIPR D+ LD L     +S FDM S FH I V     PLT F T+SG++E L +P G+S +PG+F
Sbjct:   22 SFSAPVTSRPYRVNPPVAKQVDAILDQYLAAALIQQSTSPYSSPLVVIPKTPGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTTPLTAFVTSSGVFEWLKMPQGSSAAPGFF 159          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5KWU8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.450e-27
Identity = 57/143 (39.86%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKA 522
            ++P+T R YR +P +A QV+A++ +YL  GL++   SP++SP+V   K SG +  T ++ +L     + Q+PIPR D+ LD L     +S F+M   FH I V     PLT F T+SGL+E L +P G+S +PG+F +   K+
Sbjct:   24 SAPVTFRPYRVDPPVARQVDAILDQYLAAGLIQHSTSPYSSPLVFIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFEMKFSFHQITVHRDTIPLTAFVTSSGLFEWLKLPQGSSAAPGWFAKLSTKS 166          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JJR1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 8.340e-27
Identity = 60/143 (41.96%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKA 522
            ++P+TSR YR NP +A  V+A++ +YL  GL++   SP++SP+VV  K SG +  T ++ +L     + Q+PIPR D+ LD L     +S FD+ S FH I V +   PLT F T+SGL+E L +P G+S +PG+F + +++A
Sbjct:   27 SAPVTSRPYRVNPPVAKIVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDIKSSFHQITVHDTI-PLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEA 168          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JAN9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.010e-25
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQ 528
            ++P+TSR YR NP +A QV+A++ +YL  GL++R  S ++ P+VV  K SG +  T ++ +L     + Q+PI + D+ LD L     +S  D  S FH I V     PLT F T+SGL+E L +P G+S +PG+F + +++ ++
Sbjct:   38 SAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQRSTSRYSRPLVVIPKKSGGVRITVNYRKLNKLCALSQLPISQVDDTLDKLLKGRIYSLLDTKSSFHQITVHRDTTPLTAFVTSSGLFEWLKMPQGSSTAPGWFCKVVNEVIR 182          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5K9N3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.590e-24
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 1
Query:  121 RYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
            RY+PV A QV+A++ +YL  GL++   SP++SP+VV  K SG +  T +F +L     + Q+ IPR D+ LD L     +S FDM S FH I V     PLT   T+SGL+E L +P G+S +PG+F + + + +++ H
Sbjct:   18 RYSPV-AKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNFSKLNKRCALSQLWIPRVDDTLDKLLRGRVYSLFDMKSSFHQIMVHRDTIPLTVSVTSSGLFEWLKMPQGSSAAPGWFCKAVDEVIKNLH 155          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5L4D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 8.200e-24
Identity = 54/134 (40.30%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  130 PVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQD 531
            P +A QV+A++ +YL  GL++   SP++SP+VV  + SG +  T  + RL     + Q+PIPR D+ LD L     +S FDM S FH I V     PLT F T+SGL+E L +P G+S +PG+F++ +++ +++
Sbjct:  238 PPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPRKSGGVHITVIYRRLNKLCALSQLPIPRVDDTLDKLLKGRTYSLFDMKSSFHQITVHRDTTPLTAFVTSSGLFEWLKMPQGSSAAPGWFRKVVNEVIKN 371          
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JDP0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.760e-23
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 1
Query:  118 YRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQ 528
            YR NP +A QV+A++ ++L  GL++   SP++SP+VV  K SG I  T ++ +L     + Q+PIPR D+  D L     +  FDM S FH I V     PLT F T+SGL+E L +P G+S +PG+  + +++ ++
Sbjct:  378 YRANPPVAKQVDAILDQHLAAGLIQHSTSPYSSPLVVIPKKSGGIRITVNYRKLNKLCALSQLPIPRVDDTWDNLLKGRIYFLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWLCKVVNEVIK 514          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUZ4_9PHAE2.000e-3041.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LRK5_9PHAE5.920e-3041.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV14_9PHAE1.540e-2839.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5K4_9PHAE5.110e-2842.03RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWU8_9PHAE2.450e-2739.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJR1_9PHAE8.340e-2741.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAN9_9PHAE6.010e-2538.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9N3_9PHAE5.590e-2441.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4D3_9PHAE8.200e-2440.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDP0_9PHAE4.760e-2339.42Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6499contigH-elongata_contig6499:1690..2399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.0
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog936053.I1CG80
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs1GWQ7@112252,38F42@33154,3NVKU@4751,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6499.14088.1prot_H-elongata_contig6499.14088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6499 2007..2309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.019986-UTR-H-elongata_contig6499:1689..20061622931036.019986-UTR-H-elongata_contig6499:1689..2006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6499 1690..2006 -
1691679671.3247879-UTR-H-elongata_contig6499:1689..20061691679671.3247879-UTR-H-elongata_contig6499:1689..2006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6499 1690..2006 -
1622931036.054051-UTR-H-elongata_contig6499:2309..23991622931036.054051-UTR-H-elongata_contig6499:2309..2399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6499 2310..2399 -
1691679671.3547816-UTR-H-elongata_contig6499:2309..23991691679671.3547816-UTR-H-elongata_contig6499:2309..2399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6499 2310..2399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.0383103-CDS-H-elongata_contig6499:2006..23091622931036.0383103-CDS-H-elongata_contig6499:2006..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6499 2007..2309 -
1691679671.3379238-CDS-H-elongata_contig6499:2006..23091691679671.3379238-CDS-H-elongata_contig6499:2006..2309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6499 2007..2309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6499.14088.1

>prot_H-elongata_contig6499.14088.1 ID=prot_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MNSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKL
SGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH
*
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mRNA from alignment at H-elongata_contig6499:1690..2399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6499.14088.1 ID=mRNA_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=710bp|location=Sequence derived from alignment at H-elongata_contig6499:1690..2399- (Himanthalia elongata Himel1 dioecious)
GTACAGGAGTCCTTTCATAGATTTCCAAAAGATCCAGAAGACTTGGAATT GTGGAAGAGTGACCGATTCAAAATCAAGCTTAAGGAAAACATGAATTCGC CAATTACCTCGCGCAGCTACAGGTATAACCCAGTAATAGCACATCAAGTG GAGGCTGTCATTGCCCGGTATTTGGTGGTGGGCCTAATGAGGCGCCCTCA ATCTCCACACGCCTCACCCGTTGTAGTGGCTCTCAAGTTAAGTGGGAAAA TACTAAGCACAAGTGATTTCATACGTCTTAAAGATGATACTATTATGCCT CAAATTCCTATCCCACGTACCGACGAGCTACTCGATACGCTAGGATCTGC CAGCTTCTTCAGTTCCTTTGATATGATGTCCGAGTTTCATTAGATTGACG TAGGTGAAAAACGCGGTCCCCTTACGACTTTCTATACAACCTCTGGGTTG TACGAAGTTCTCGTTATCCCTATGGGCACGTCGGGATCGCCGGGTTATTT CCAGCGGTTCTTGCACAAGGCACTGCAGGACTGTCACAACTCGTGACTAT CTACATTGGTGATGTGTTAGTAAGTAGCAAGGATGAATCGAGTATGGTCG AGAGCACAGAAAAACTCATCGAGGCCCTTACGAAACACAATCTAAAAATA TCTTCACCAAAGTCGGAGATCAGTGCCGAACAAATTATATTCCTAGGTCA TACGATATCA
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Coding sequence (CDS) from alignment at H-elongata_contig6499:1690..2399-

>mRNA_H-elongata_contig6499.14088.1 ID=mRNA_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6499:1690..2399- (Himanthalia elongata Himel1 dioecious)
ATGAATTCGCCAATTACCTCGCGCAGCTACAGGTATAACCCAGTAATAGC
ACATCAAGTGGAGGCTGTCATTGCCCGGTATTTGGTGGTGGGCCTAATGA
GGCGCCCTCAATCTCCACACGCCTCACCCGTTGTAGTGGCTCTCAAGTTA
AGTGGGAAAATACTAAGCACAAGTGATTTCATACGTCTTAAAGATGATAC
TATTATGCCTCAAATTCCTATCCCACGTACCGACGAGCTACTCGATACGC
TAGGATCTGCCAGCTTCTTCAGTTCCTTTGATATGATGTCCGAGTTTCAT
TAGATGAATTCGCCAATTACCTCGCGCAGCTACAGGTATAACCCAGTAAT
AGCACATCAAGTGGAGGCTGTCATTGCCCGGTATTTGGTGGTGGGCCTAA
TGAGGCGCCCTCAATCTCCACACGCCTCACCCGTTGTAGTGGCTCTCAAG
TTAAGTGGGAAAATACTAAGCACAAGTGATTTCATACGTCTTAAAGATGA
TACTATTATGCCTCAAATTCCTATCCCACGTACCGACGAGCTACTCGATA
CGCTAGGATCTGCCAGCTTCTTCAGTTCCTTTGATATGATGTCCGAGTTT
CATTAG
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