mRNA_H-elongata_contig64985.14086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64985.14086.1
Unique NamemRNA_H-elongata_contig64985.14086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64985.14086.1 vs. uniprot
Match: D8LI28_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI28_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.190e-60
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 1 
Query:  190 AEAATVDRTRLGTPILTESILLDLLPISGTGADVLRTIQNDIEKATILRTIYRRGTYSQTGGLVEQLTVPPSVWDRVQFVAERALEYLVERRSDLEPVFREMDTAETQIRRAEYSEQIFSVTKEALIRMAAGAKARQTPAVLSAQEDALLGLG 648
            AEAA VDRTRLGTPILTES+LLDLLPI G  A+VLR IQ++IEKATILRT+YRR  YS TG +VEQL VPP+VWDRV  V+E ALE L E+R D+EPVFREMD+AE QIRRAEY E +F+  KEAL RMAAGA++R  P VL+AQEDALL LG
Sbjct:   28 AEAAVVDRTRLGTPILTESVLLDLLPIDGVRANVLRAIQDEIEKATILRTLYRRVNYSTTGSVVEQLPVPPAVWDRVLAVSEGALEILEEQRGDIEPVFREMDSAEAQIRRAEYFESVFASAKEALTRMAAGARSRLPPTVLAAQEDALLALG 180
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BLAST of mRNA_H-elongata_contig64985.14086.1 vs. uniprot
Match: A0A6H5KQ41_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ41_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 7.890e-59
Identity = 111/153 (72.55%), Postives = 126/153 (82.35%), Query Frame = 1 
Query:  190 AEAATVDRTRLGTPILTESILLDLLPISGTGADVLRTIQNDIEKATILRTIYRRGTYSQTGGLVEQLTVPPSVWDRVQFVAERALEYLVERRSDLEPVFREMDTAETQIRRAEYSEQIFSVTKEALIRMAAGAKARQTPAVLSAQEDALLGLG 648
            AEAA VDRTRLGTPILTES+LLDLLPI G  A+VLR IQ +IEKATILRT+YRR  YS TG +VEQL VPP+VWDRV  V+E ALE L E+R  +EPVFREMD+AE QIRRAEY E +F+  KEAL RMAAGA++R  PAVL+AQEDALL LG
Sbjct:  180 AEAAVVDRTRLGTPILTESVLLDLLPIDGVRANVLRAIQEEIEKATILRTLYRRVNYSTTGSVVEQLPVPPAVWDRVLAVSEGALEILEEQRGAIEPVFREMDSAEAQIRRAEYFESVFAAAKEALTRMAAGARSRLPPAVLTAQEDALLALG 332
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BLAST of mRNA_H-elongata_contig64985.14086.1 vs. uniprot
Match: A0A836CJU1_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.550e-36
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 1 
Query:  190 AEAATVDRTRLGTPILTESILLDLLPISGTGADVLRTIQNDIEKATILRTIYRRGTYSQTGGLVEQLTVPPSVWDRVQFVAERALEYLVERRSDLEPVFREMDTAETQIRRAEYSEQIFSVTKEALIRMAAGAKARQTPAVLSAQEDALLGL 645
            A AA + R +LG+PILTES+LLDLLPI G GAD LR +Q +IEKATILRTIY RG      G V   T+P SVWD++  V   AL  L ERR +L+P FRE+DTAE QIRRAE  E+    T+  L+ +   A+AR   AVL AQ  ALL L
Sbjct:   51 ASAAPLARVKLGSPILTESVLLDLLPIKGAGADALRMVQGEIEKATILRTIYTRGQDYDAAGNV---TIPGSVWDQISKVGNTALAILEERRRELQPTFREVDTAEVQIRRAERGEEELDETRRQLMALTHAAEARNVSAVLDAQSGALLHL 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64985.14086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LI28_ECTSI1.190e-6072.55Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KQ41_9PHAE7.890e-5972.55Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A836CJU1_9STRA1.550e-3655.26Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64985contigH-elongata_contig64985:955..3393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue5.3e-52
Seed eggNOG ortholog2880.D8LI28
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2SRDI@2759,COG0652@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Ec32 orthologEc-04_003010.1
Exons5
Model size653
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64985.14086.1prot_H-elongata_contig64985.14086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64985 955..3393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.741714-CDS-H-elongata_contig64985:954..11521622931035.741714-CDS-H-elongata_contig64985:954..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 955..1152 +
1691679671.1977446-CDS-H-elongata_contig64985:954..11521691679671.1977446-CDS-H-elongata_contig64985:954..1152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 955..1152 +
1622931035.7830453-CDS-H-elongata_contig64985:1615..17231622931035.7830453-CDS-H-elongata_contig64985:1615..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 1616..1723 +
1691679671.212841-CDS-H-elongata_contig64985:1615..17231691679671.212841-CDS-H-elongata_contig64985:1615..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 1616..1723 +
1622931035.808834-CDS-H-elongata_contig64985:2179..22661622931035.808834-CDS-H-elongata_contig64985:2179..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 2180..2266 +
1691679671.232643-CDS-H-elongata_contig64985:2179..22661691679671.232643-CDS-H-elongata_contig64985:2179..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 2180..2266 +
1622931035.8254862-CDS-H-elongata_contig64985:2648..27621622931035.8254862-CDS-H-elongata_contig64985:2648..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 2649..2762 +
1691679671.2495434-CDS-H-elongata_contig64985:2648..27621691679671.2495434-CDS-H-elongata_contig64985:2648..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 2649..2762 +
1622931035.8460293-CDS-H-elongata_contig64985:3249..33931622931035.8460293-CDS-H-elongata_contig64985:3249..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 3250..3393 +
1691679671.2680528-CDS-H-elongata_contig64985:3249..33931691679671.2680528-CDS-H-elongata_contig64985:3249..3393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64985 3250..3393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64985.14086.1

>prot_H-elongata_contig64985.14086.1 ID=prot_H-elongata_contig64985.14086.1|Name=mRNA_H-elongata_contig64985.14086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
KDRHPSLSATSPRFGGGKARREGNCGTAAGEGVDRGGFVRTVVSGLVAAP
VVRYAAIQEGNFVAEAATVDRTRLGTPILTESILLDLLPISGTGADVLRT
IQNDIEKATILRTIYRRGTYSQTGGLVEQLTVPPSVWDRVQFVAERALEY
LVERRSDLEPVFREMDTAETQIRRAEYSEQIFSVTKEALIRMAAGAKARQ
TPAVLSAQEDALLGLG*
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mRNA from alignment at H-elongata_contig64985:955..3393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64985.14086.1 ID=mRNA_H-elongata_contig64985.14086.1|Name=mRNA_H-elongata_contig64985.14086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2439bp|location=Sequence derived from alignment at H-elongata_contig64985:955..3393+ (Himanthalia elongata Himel1 dioecious)
AAGGATAGACATCCTAGCTTGAGCGCGACATCACCGAGGTTTGGAGGGGG
CAAGGCGCGGCGGGAAGGAAATTGCGGCACCGCGGCAGGGGAAGGGGTGG
ATAGAGGCGGGTTCGTTCGCACGGTGGTTTCGGGATTGGTCGCAGCTCCG
GTTGTCAGATATGCGGCAATCCAAGAGGGTAACTTCGTGGCGGAGGCGGT
AAGAAGTGCCTTTCGACAGGGTTAATTTCCTCAAAAGCTCCCTTTTAGGC
GTAGGAACTTACTACTTTTACTATATGCGATTTCGGCTTGTATAAAGAGG
CGTTCTCGCGTGGGTGCATGTCCCACGGTTAGCTCTAGTGCTCTATCCCC
CTTCATGGAACTGCCGCGGAAAATACTTTGGCATTAGTTCACTGCGAAGT
CATCGCGTAAGCACCCAGCACCCGTCGTGTGGCCAATGCGATCTTGATCC
CCCCCCCCTTAACTGATACCCTAGACACACGCCTCCTCCAAGCGTTAGCG
AGAGTCCAATCGGTTTATTTTCCATTCCTGGTAGGCGTTTTCATTTCCGG
TCGCCATTCGCGTTGTCGCCGTCTGCGACTTGTGTAGGGAACACAACCGC
GATGCGAGATCCTCTTCACGCCGTCCCGGCCTTTCCGGCTCCGCTTGGCG
CTTGCTGCCAGGCGACGGTGGACCGTACCCGATTGGGGACGCCTATCTTG
ACGGAGTCGATCCTTTTGGACCTGCTGCCCATCAGCGGAACCGGGGCGGA
TGTGCTCCGGACGATTCAGGTATCGTGCAGCTCGCACCGGAGACCGCTCT
CTATTGGTAGCTCCTGGTGGGAGAGATAAACGTTTACACCGTCGGGTGAC
TTCACCGGAGACGGGACGGCAACACTTGTCCAGCCCGACGCTTGAAAAAA
AAAAAGAGATTGCACAGCTTTTGCGACGTGTTTTCCGCGTTTTGCCTCAC
TGCTGTGTATTGGACGAACAATACTTCAAAGAGCACAGAGCAACCATTTC
CTGTACGCGTAATGCTATCCAACGTGGGAATGGTCAGGGGGGGGGGGGGG
GAAAGAGGCACCCGAAAACACCAATTTTTAACGCGGTATACTCTTCGGAT
GGTACAGGAGAACGCGGAGGCGGCAGGGTACCTACTGCGGCTGATTCGCC
CGCTGGCGGTTCCGTTTCTTTCTGGCGGTGCTTTTCTTGTATTTGTCCCT
CATTCCGCTACTCTTGTGGAGGCAGAATGATATCGAGAAGGCAACTATAC
TGAGGACTATATACAGGAGAGGTACCTACTCGCAGACGGGCGGCCTCGTG
GAACAGCTAACGGTGAGGAACACGGAAACTATCAGGAGAGAGGGTGGGGG
GGGGGGATAAGCTGCGACAACCAAACCCGGTGTATGGCTGGTGAAAAACG
CGGATCTTGTTTCGTGGAATGCATTGCGCAAAAACTCGTGGCAGGTGTTT
GGCGGGTGGTGCCTCGACTTCCCGCGCAGCCGAGCTGGAGGCAACCGAAA
TTGTTCATAAAAGCAGAAGCCCTCGCTTCTCGGCTGTTGAATTATTTCCC
TCTGGATAATTCATCCCATCCCGCAGCCTAAGATGTAATGGAGGAAGACT
TAAAGGGGGTTTTGCCCTGTCTGCGCTACGCGCTACGATATAATCTTCCC
CTTCTGATTTCTTGGCTGCCTGGGTTGTCTCTCGGCACGCGAAGGTGCCT
CCATCGGTCTGGGATCGTGTCCAGTTCGTGGCAGAGAGAGCGCTGGAGTA
CCTCGTAGAACGGAGATCCGATCTCGAGCCCGTCTTCCGAGAGATGGACA
CGGCAGAAGTGAGCTAAATGTGCTTCGACGAAGATAATCGCGGCTTTTTT
TTTACTTTTTATTTGGTCTCCCCTTCTCCCCTCCCCCTATCCCACCTCGT
GCTATTGCACGCCACGTCCCACCACCGCTTTACCTCCTTGTCAGTTCGAA
CTTGGAAGGCGTTTCGAATGGTTCGGTTGCTGCTACAGTATATCCCACGC
GATCACATGTTACGTATATGTATGTTGTATGTTTGCGATTGTTGTATCCT
AAGCCGGCGGGGTAAGCGTCCTACCCGCAAGACTTTGTGCACCACTGCGG
TACCAAGAGAAGATCATCCGTTCGTTGTCGAGAGCGCTAGATTAGTAGCG
TATATCGGAAGTCTCTCTTCCCCCCCCCCCTCCGTCTCTCCAACCTTCCC
TTTCGCCTCAAACTCCGTCCATGCCGGGACGGCTGTCTCTTGAACCGTTT
TTCATCCGGGCGGTGACATACACGTTGTGCGATCCCGTCCGACAGACTCA
GATCAGGCGCGCGGAGTATTCCGAACAAATATTCTCGGTGACCAAGGAGG
CGTTGATAAGAATGGCGGCGGGGGCAAAGGCGAGACAAACGCCCGCGGTT
CTCTCTGCTCAGGAGGATGCATTGCTGGGATTGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig64985:955..3393+

>mRNA_H-elongata_contig64985.14086.1 ID=mRNA_H-elongata_contig64985.14086.1|Name=mRNA_H-elongata_contig64985.14086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig64985:955..3393+ (Himanthalia elongata Himel1 dioecious)
AAGGATAGACATCCTAGCTTGAGCGCGACATCACCGAGGTTTGGAGGGGG
CAAGGCGCGGCGGGAAGGAAATTGCGGCACCGCGGCAGGGGAAGGGGTGG
ATAGAGGCGGGTTCGTTCGCACGGTGGTTTCGGGATTGGTCGCAGCTCCG
GTTGTCAGATATGCGGCAATCCAAGAGGGTAACTTCGTGGCGGAGGCGAA
GGATAGACATCCTAGCTTGAGCGCGACATCACCGAGGTTTGGAGGGGGCA
AGGCGCGGCGGGAAGGAAATTGCGGCACCGCGGCAGGGGAAGGGGTGGAT
AGAGGCGGGTTCGTTCGCACGGTGGTTTCGGGATTGGTCGCAGCTCCGGT
TGTCAGATATGCGGCAATCCAAGAGGGTAACTTCGTGGCGGAGGCGGCGA
CGGTGGACCGTACCCGATTGGGGACGCCTATCTTGACGGAGTCGATCCTT
TTGGACCTGCTGCCCATCAGCGGAACCGGGGCGGATGTGCTCCGGACGAT
TCAGGCGACGGTGGACCGTACCCGATTGGGGACGCCTATCTTGACGGAGT
CGATCCTTTTGGACCTGCTGCCCATCAGCGGAACCGGGGCGGATGTGCTC
CGGACGATTCAGAATGATATCGAGAAGGCAACTATACTGAGGACTATATA
CAGGAGAGGTACCTACTCGCAGACGGGCGGCCTCGTGGAACAGCTAACGA
ATGATATCGAGAAGGCAACTATACTGAGGACTATATACAGGAGAGGTACC
TACTCGCAGACGGGCGGCCTCGTGGAACAGCTAACGGTGCCTCCATCGGT
CTGGGATCGTGTCCAGTTCGTGGCAGAGAGAGCGCTGGAGTACCTCGTAG
AACGGAGATCCGATCTCGAGCCCGTCTTCCGAGAGATGGACACGGCAGAA
GTGCCTCCATCGGTCTGGGATCGTGTCCAGTTCGTGGCAGAGAGAGCGCT
GGAGTACCTCGTAGAACGGAGATCCGATCTCGAGCCCGTCTTCCGAGAGA
TGGACACGGCAGAAACTCAGATCAGGCGCGCGGAGTATTCCGAACAAATA
TTCTCGGTGACCAAGGAGGCGTTGATAAGAATGGCGGCGGGGGCAAAGGC
GAGACAAACGCCCGCGGTTCTCTCTGCTCAGGAGGATGCATTGCTGGGAT
TGGGGTAAACTCAGATCAGGCGCGCGGAGTATTCCGAACAAATATTCTCG
GTGACCAAGGAGGCGTTGATAAGAATGGCGGCGGGGGCAAAGGCGAGACA
AACGCCCGCGGTTCTCTCTGCTCAGGAGGATGCATTGCTGGGATTGGGGT
AA
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