mRNA_H-elongata_contig64966.14083.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64966.14083.1
Unique NamemRNA_H-elongata_contig64966.14083.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: D8LJE6_ECTSI (Ankyrin (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.560e-16
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   16 TPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIACS 249
            TPLHVASK SS+DIL E+L++P+I  +INTF DKT+V                LLL AGAD++  SGD STA HIACS
Sbjct:   46 TPLHVASKGSSQDILRELLKHPEIGRSINTFTDKTNVXXXXXXXXXXXXXXXXLLLDAGADISSPSGDLSTAFHIACS 123
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: A0A6H5JLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.750e-14
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   16 TPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSV------TPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIACS 249
            TPLHVASK SS+DIL E+L++P+I  +INTF DKT+V      T               LLL AGAD++  SGD STA HIACS
Sbjct:   46 TPLHVASKGSSQDILRELLKHPEIGRSINTFTDKTNVGHAPFVTXXXXXXXXXXXXXXXLLLDAGADISSPSGDLSTAFHIACS 129
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: UPI0013DDAE96 (NF-kappa-B inhibitor cactus isoform X2 n=1 Tax=Drosophila sechellia TaxID=7238 RepID=UPI0013DDAE96)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-7
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   10 GPTPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIAC 246
            G  PLH+A  S S D++  ++R     C +N   D  + TPLH AA ++ P ++R+LL AGA+ T+     +TALH++C
Sbjct:    3 GDKPLHLACISGSVDVVAALIRMAPHPCLLNIQND-VAQTPLHLAALTAQPNIMRILLLAGAEPTVRDRHGNTALHLSC 80
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: A0A1B0ANE0_9MUSC (Uncharacterized protein n=3 Tax=Nemorhina TaxID=44051 RepID=A0A1B0ANE0_9MUSC)

HSP 1 Score: 50.1 bits (118), Expect = 3.870e-5
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   10 GPTPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIAC 246
            G T LH+A     E+++  +L     SC  +   D     PLH AA +  P ++R+LL AGAD T+     +TALH+AC
Sbjct:  125 GDTFLHLACIMKDENLVKTILSKTPHSCLYDILNDDCQA-PLHLAALTKRPNILRMLLLAGADPTVRDRRGNTALHLAC 202
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: UPI0018CCFFC7 (NF-kappa-B inhibitor cactus n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CCFFC7)

HSP 1 Score: 50.1 bits (118), Expect = 3.930e-5
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   10 GPTPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIAC 246
            G T LH+A       ++  ++R     C  N   D  S TPLH AA ++ P ++R+LL AGAD T+     +TALH++C
Sbjct:  337 GDTTLHLACIHGYVGVVAALIRMAPHPCLFNIKND-LSQTPLHLAALTAQPKILRMLLIAGADPTIRDRHGNTALHLSC 414
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BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Match: A0A1B0G4F4_GLOMM (Cactus n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0G4F4_GLOMM)

HSP 1 Score: 49.7 bits (117), Expect = 4.900e-5
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   10 GPTPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAGSSSPGVVRLLLKAGADLTLLSGDRSTALHIAC 246
            G T LH+A     E+++  +L     SC  +   D     PLH AA +  P ++R+LL AGAD T+     +TALH+AC
Sbjct:  123 GDTFLHLACILKDENLVKTILSKAPHSCLYDILNDDCQA-PLHLAALTKRPNILRMLLLAGADPTVRDRRGNTALHLAC 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64966.14083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJE6_ECTSI5.560e-1655.13Ankyrin (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5JLF8_9PHAE1.750e-1452.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013DDAE961.080e-739.24NF-kappa-B inhibitor cactus isoform X2 n=1 Tax=Dro... [more]
A0A1B0ANE0_9MUSC3.870e-537.97Uncharacterized protein n=3 Tax=Nemorhina TaxID=44... [more]
UPI0018CCFFC73.930e-537.97NF-kappa-B inhibitor cactus n=1 Tax=Teleopsis dalm... [more]
A0A1B0G4F4_GLOMM4.900e-537.97Cactus n=1 Tax=Glossina morsitans morsitans TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64966contigH-elongata_contig64966:2007..2255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog2880.D8LJE6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_010090.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.339293-CDS-H-elongata_contig64966:2006..22551622931035.339293-CDS-H-elongata_contig64966:2006..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64966 2007..2255 -
1691679671.0886137-CDS-H-elongata_contig64966:2006..22551691679671.0886137-CDS-H-elongata_contig64966:2006..2255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64966 2007..2255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64966.14083.1prot_H-elongata_contig64966.14083.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64966 2007..2255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64966.14083.1

>prot_H-elongata_contig64966.14083.1 ID=prot_H-elongata_contig64966.14083.1|Name=mRNA_H-elongata_contig64966.14083.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MTRGPTPLHVASKSSSEDILMEVLRYPDISCNINTFADKTSVTPLHEAAG
SSSPGVVRLLLKAGADLTLLSGDRSTALHIACS
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mRNA from alignment at H-elongata_contig64966:2007..2255-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64966.14083.1 ID=mRNA_H-elongata_contig64966.14083.1|Name=mRNA_H-elongata_contig64966.14083.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig64966:2007..2255- (Himanthalia elongata Himel1 dioecious)
ATGACGAGGGGCCCAACTCCGCTGCACGTTGCCAGCAAGAGCTCGAGCGA
GGATATTCTCATGGAGGTCTTGCGTTACCCTGATATCAGCTGCAACATTA
ACACGTTCGCCGACAAGACCAGCGTCACCCCTCTTCACGAGGCGGCGGGA
TCAAGCTCTCCTGGGGTTGTTCGCCTTCTTCTTAAAGCGGGTGCCGACCT
CACTTTGCTATCTGGAGACAGATCAACCGCCCTCCATATAGCATGCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig64966:2007..2255-

>mRNA_H-elongata_contig64966.14083.1 ID=mRNA_H-elongata_contig64966.14083.1|Name=mRNA_H-elongata_contig64966.14083.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig64966:2007..2255- (Himanthalia elongata Himel1 dioecious)
ATGACGAGGGGCCCAACTCCGCTGCACGTTGCCAGCAAGAGCTCGAGCGA
GGATATTCTCATGGAGGTCTTGCGTTACCCTGATATCAGCTGCAACATTA
ACACGTTCGCCGACAAGACCAGCGTCACCCCTCTTCACGAGGCGGCGGGA
TCAAGCTCTCCTGGGGTTGTTCGCCTTCTTCTTAAAGCGGGTGCCGACCT
CACTTTGCTATCTGGAGACAGATCAACCGCCCTCCATATAGCATGCTCTA
TGACGAGGGGCCCAACTCCGCTGCACGTTGCCAGCAAGAGCTCGAGCGAG
GATATTCTCATGGAGGTCTTGCGTTACCCTGATATCAGCTGCAACATTAA
CACGTTCGCCGACAAGACCAGCGTCACCCCTCTTCACGAGGCGGCGGGAT
CAAGCTCTCCTGGGGTTGTTCGCCTTCTTCTTAAAGCGGGTGCCGACCTC
ACTTTGCTATCTGGAGACAGATCAACCGCCCTCCATATAGCATGCTCT
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