mRNA_H-elongata_contig6493.14079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6493.14079.1
Unique NamemRNA_H-elongata_contig6493.14079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 6.760e-113
Identity = 368/707 (52.05%), Postives = 432/707 (61.10%), Query Frame = 3 
Query:  288 MIDFSYSYIVPGHLPDP------------AELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSS--SADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAASENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAE----KAVDGESSLVGPPSCGVRRLLLTGN-QLGDGGARSLASLLAKDSSVEVLDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLITNRGTLETLELAGNRIGDSGALALARGLTGTD--GGGRVGGLRREKTSTL---GRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRVVLEELELSGNPLTLSAAQAAEASKKNAFLYKSAGDALSSLLNQFVDESYY----------------RPGASPSSPGGVGERDDGKFLRCAVAAFGVSLRGEAC-----------------SLKALGLARTGMTDSDALKLAAALGERSADSPLAHVEVFLNGLGVEAMEAVRLAVESPTGPEHCSDPDEPYRFAEGRRAWARNRGNGR--------------SARGT-RPS-RSRRKSYVRGDGNDERAVLGEMQNYAPVGGNVELELFGRKVASFRQERVTGSGLEVKVFGKRVRFER 2189
            M+DFS+S + P  L D                HP    +   P  +LSLRECSLGD GV+E+ARSPWV G    RALSLR NQ+TA GVRAL ++LRS+  S DR++CLELDFNP+GDAG QPLPAYLK+RA+RGGGGLEELSLRFC IGPAG  Y+SSAL KSA +A  + N D+                 ++   E P+  G                 K    E  L  P + G+RRLLLTGN +LGD GA++LAS L KD+S++VLDLTRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         LE LEL GN +GD+GA+ALA GL G +  GG R  G  ++  S+    G R  XXXXXXXXXXXXXXXXXXXXXXXXXX  G VVLEELEL+GN LTLSA+QAA A  K++ LYKSAG ALSSLL  FVDESYY                 P +  +  GGV ER     LRCAVA  G +L G+                   SLKA+GLARTG+T+ DA +LAAAL  R  DSPL  VEV LNGL V+A EA+RLAVESPT P      D    F +      +N G GR              +A G   P  RSRR +       +  A   E+  Y P GG+VEL LFG+K ASF+Q   +G  L+V+VFGKRVRFER
Sbjct:   37 MLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHP----NTNPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDDA-----------------NSPASEAPTTAGXXXXXXXXXXXXXXXXXKKGGAEVVLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDNSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVGGNNRGGRRXXGASKQGISSRRGPGLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGVVLEELELAGNALTLSASQAA-AQAKSSSLYKSAGGALSSLLTTFVDESYYGGNSNNRGSVQDASALTPPSLGNPAGGVAERP----LRCAVAELGEALAGQGARGXXXXXXXXXXXXGCPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPH-----DRSSSFVDD---LEKNGGRGRXXXXXXXXXXRHDPAAPGVDEPGLRSRRGTATAAPAEERSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFER 707
[Close]
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 2.020e-71
Identity = 245/424 (57.78%), Postives = 286/424 (67.45%), Query Frame = 3 
Query:  288 MIDFSYSYIVPGHLPDPAELHPA---IEG------DDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSS--SADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAASENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAEKAVDGESSLVGPPSCGVRRLLLTGN-QLGDGGARSLASLLAKDSSVEVLDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLITNRGTLETLELAGNRIGDSGALALARGLTG-TDGGGRVGGLRREKTSTLGRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGR---VVLEELELSGNPLTLSAAQAAEASK 1511
            M+DFS+S + P  L D  ++  A    EG      D  +P  +LSLRECSLGD GV+E+ARSPWV G    RALSLR NQ+TA GVRAL ++LRS+  S DR++CLELDFNP+GDAG QPLPAYLK+RA+RGGGGLEELSLRFC IGPAGCRY+SSAL KSA +A  S N D    +                        G +  +P                  P + G+RRLLLTGN ++GD GA++LAS L KDSS++VLDLTRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL      LE LEL GN +GD+GA+ALA GL G +  GGR      ++ S+  R  G    XXXXXXXXXXXXXXXXXXXXXX  G    VVLEELEL+GN LTLSA+QAA  +K
Sbjct:   90 MLDFSFSPLGPRGLQD-TDIDAAGVVEEGQHHRYPDTNSPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDDPNNSAXXXXXXXXXXXXXXXXXXXXXXKGGAEFGLPP-----------------PAASGIRRLLLTGNDRIGDAGAKALASALKKDSSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHAGSSALECLELQGNHVGDAGAVALADGLVGGSKRGGRXXXXXAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKGGXXGGVVLEELELAGNALTLSASQAAAQAK 495
[Close]
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.580e-20
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 3 
Query:  282 GGMIDFSYSYIVPGHLPDPAELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSSSADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSA 749
            G  ID S+S++ P      +E+   +      PS  L L+ECSLGD G  ++  S  V        LSLRHN I  +G R+L + LR++  DR+  L LDFN +GDAG QPLPA LK  ++   G LE LSLRFCGI  AGCR I+SAL+K+  +A
Sbjct:   52 GQFIDLSFSHVGPVGA---SEVLSGLSEASAAPS-GLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLRTAP-DRLQTLVLDFNLIGDAGLQPLPALLKDSSN---GRLESLSLRFCGISAAGCRSIASALSKAQVNA 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLY3_ECTSI6.760e-11352.05Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JEB8_9PHAE2.020e-7157.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z931_9STRA1.580e-2045.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6493contigH-elongata_contig6493:1617..9471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.7
Seed ortholog evalue6.9e-108
Seed eggNOG ortholog2880.D8LLY3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_002100.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons9
Model size3747
Cds size2523
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.727916-UTR-H-elongata_contig6493:1616..28321622931034.727916-UTR-H-elongata_contig6493:1616..2832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6493 1617..2832 -
1691679670.788779-UTR-H-elongata_contig6493:1616..28321691679670.788779-UTR-H-elongata_contig6493:1616..2832Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6493 1617..2832 -
1622931034.958798-UTR-H-elongata_contig6493:9463..94711622931034.958798-UTR-H-elongata_contig6493:9463..9471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6493 9464..9471 -
1691679670.8836548-UTR-H-elongata_contig6493:9463..94711691679670.8836548-UTR-H-elongata_contig6493:9463..9471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6493 9464..9471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.7584763-CDS-H-elongata_contig6493:2832..29551622931034.7584763-CDS-H-elongata_contig6493:2832..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 2833..2955 -
1691679670.8011386-CDS-H-elongata_contig6493:2832..29551691679670.8011386-CDS-H-elongata_contig6493:2832..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 2833..2955 -
1622931034.7763789-CDS-H-elongata_contig6493:3088..33701622931034.7763789-CDS-H-elongata_contig6493:3088..3370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 3089..3370 -
1691679670.8089845-CDS-H-elongata_contig6493:3088..33701691679670.8089845-CDS-H-elongata_contig6493:3088..3370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 3089..3370 -
1622931034.8621492-CDS-H-elongata_contig6493:3733..40481622931034.8621492-CDS-H-elongata_contig6493:3733..4048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 3734..4048 -
1691679670.8171582-CDS-H-elongata_contig6493:3733..40481691679670.8171582-CDS-H-elongata_contig6493:3733..4048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 3734..4048 -
1622931034.8735902-CDS-H-elongata_contig6493:4433..47721622931034.8735902-CDS-H-elongata_contig6493:4433..4772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 4434..4772 -
1691679670.8252015-CDS-H-elongata_contig6493:4433..47721691679670.8252015-CDS-H-elongata_contig6493:4433..4772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 4434..4772 -
1622931034.8868358-CDS-H-elongata_contig6493:5103..54461622931034.8868358-CDS-H-elongata_contig6493:5103..5446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 5104..5446 -
1691679670.8339608-CDS-H-elongata_contig6493:5103..54461691679670.8339608-CDS-H-elongata_contig6493:5103..5446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 5104..5446 -
1622931034.8983452-CDS-H-elongata_contig6493:5762..58371622931034.8983452-CDS-H-elongata_contig6493:5762..5837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 5763..5837 -
1691679670.844082-CDS-H-elongata_contig6493:5762..58371691679670.844082-CDS-H-elongata_contig6493:5762..5837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 5763..5837 -
1622931034.9095736-CDS-H-elongata_contig6493:6694..70391622931034.9095736-CDS-H-elongata_contig6493:6694..7039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 6695..7039 -
1691679670.8536289-CDS-H-elongata_contig6493:6694..70391691679670.8536289-CDS-H-elongata_contig6493:6694..7039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 6695..7039 -
1622931034.925041-CDS-H-elongata_contig6493:7451..76601622931034.925041-CDS-H-elongata_contig6493:7451..7660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 7452..7660 -
1691679670.8630672-CDS-H-elongata_contig6493:7451..76601691679670.8630672-CDS-H-elongata_contig6493:7451..7660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 7452..7660 -
1622931034.940019-CDS-H-elongata_contig6493:8971..94631622931034.940019-CDS-H-elongata_contig6493:8971..9463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 8972..9463 -
1691679670.8735135-CDS-H-elongata_contig6493:8971..94631691679670.8735135-CDS-H-elongata_contig6493:8971..9463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6493 8972..9463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6493.14079.1prot_H-elongata_contig6493.14079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6493 2833..9463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6493.14079.1

>prot_H-elongata_contig6493.14079.1 ID=prot_H-elongata_contig6493.14079.1|Name=mRNA_H-elongata_contig6493.14079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=841bp
MPAMASKRLRRSDGVLPITTLTCLLLVELFYVCLGYAEIGGNLDDTVTPA
SGPQAVSPTIQLNNDRTNQSDVDFSTQDNSSGGAGAVMVEQGGMIDFSYS
YIVPGHLPDPAELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVC
GDMAARALSLRHNQITAIGVRALFEALRSSSADRMSCLELDFNPLGDAGT
QPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAAS
ENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAEKAV
DGESSLVGPPSCGVRRLLLTGNQLGDGGARSLASLLAKDSSVEVLDLTRC
HIGDEGARCLADALRSNTRLRELRLCYNEISFEGASSLAALLITNRGTLE
TLELAGNRIGDSGALALARGLTGTDGGGRVGGLRREKTSTLGRREGGLRR
LNLSGNFIGCVGGCALAKALRGSSGRVVLEELELSGNPLTLSAAQAAEAS
KKNAFLYKSAGDALSSLLNQFVDESYYRPGASPSSPGGVGERDDGKFLRC
AVAAFGVSLRGEACSLKALGLARTGMTDSDALKLAAALGERSADSPLAHV
EVFLNGLGVEAMEAVRLAVESPTGPEHCSDPDEPYRFAEGRRAWARNRGN
GRSARGTRPSRSRRKSYVRGDGNDERAVLGEMQNYAPVGGNVELELFGRK
VASFRQERVTGSGLEVKVFGKRVRFERPSAASTRYSRGVNIPRSGAAASY
NGGWDRDDADSHGGFYDEDSGEEVDDEGVDEEDEDDDEEVDEEDEDDDEE
SMKRMKTMTKESMKRMKTTTMTVATTVERESKALVVPFLA*
back to top

mRNA from alignment at H-elongata_contig6493:1617..9471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6493.14079.1 ID=mRNA_H-elongata_contig6493.14079.1|Name=mRNA_H-elongata_contig6493.14079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7855bp|location=Sequence derived from alignment at H-elongata_contig6493:1617..9471- (Himanthalia elongata Himel1 dioecious)
ATGTGTAAATGCCTGCAATGGCAAGCAAACGGTTACGACGAAGCGATGGC
GTACTCCCCATCACCACACTCACATGCCTTCTTCTGGTGGAATTGTTTTA
TGTATGCTTGGGGTATGCTGAGATTGGAGGTAACCTCGACGATACGGTCA
CTCCCGCCAGCGGCCCACAAGCAGTGTCACCCACAATCCAGCTCAACAAC
GACCGAACTAACCAATCTGATGTGGACTTCAGCACCCAGGACAATAGCAG
TGGTGGCGCCGGTGCAGTCATGGTGGAACAAGGTGGCATGATCGATTTTT
CCTACTCTTACATAGTGCCAGGCCACTTGCCTGATCCTGCAGAGCTTCAT
CCCGCCATCGAGGGAGATGACACCACGCCTTCGATGAGCCTAAGCTTGCG
TGAATGTTCCCTGGGAGACGCTGGAGTGTCCGAGCTAGCGCGTTCTCCCT
GGGTTTGTGGGGATATGGCGGCCAGAGCGCTGTCGCTTCGTCATAACCAG
GTGGGCCATATTTTTTGAACTCATGCGACAACGGCAGTGTACGCTCATGG
TAATGAGCTGGTAGCTTGTTTCCTACTGTAGTCGAAGAGATGCAAAGGTA
AACCTCGTATATGCTGCTGTGTATTATATCTTATATTTCCTGTTGTTTTT
CCTCTATGATCCACAGGACTCGGCATGTACAGTACTCTACTACAGTATTA
TTCTTTTAAAAAATGAACTCATTCCAACCCTCCGAATATCCACGCCCTCT
TAGCACCGTGAGAGGTGAAGTCCAGGGGGCCAACTATCGTCAGGTTCGAA
TGTGTACATTACTCCCTTTGAGCGCAAAATCGTCACATACATATGATTTA
TGGTGTTTCCCCGATAGTAAGTTAGTTCATTGGGTCGACGATATAATGTC
GGAATCTTAATTCTGGCTCTTTCGCAAAAAGGTTGAGAAGTCTAGACAGA
AATAAAAGCAAAATATTGCTCTGTTTGGGCGGTGTCCTCTGCCCGTTGCA
CTCCAGCGTAGGCGGCATGGGATATTGAAAGTTGGTTTGCTGTATCATCT
TTGGCAATATGATAATGTGTATTGTCATCCCGTTTATTCTGGACGCAGCA
GTCGGGGTCGCGCAGGAGGAAGGTCACACATTATTTCTTCACCTTCCTTC
TGCGGTGCTTGCTTTCATTTTTTATCGCGACGAGTATTCAGCAGTTCCTT
TCCCTTGTCGACAGTAAAGTCGTGGGGGGAGGGGTATTTGTTATTTGTGT
ACCCACGAACGAATCGTTCTCCACTTGTTGGGCATGATGTGAAAGAAAAT
TCCAGTTCGTGTGACTGCGCCCGAGATTTGAACTCATGGCCCAACGTCAG
AAGGTTTCGAGGTTACCAACTGAACCACAGGGGCGAATTGTAGTAGAGAG
GTTAGAAGACCGTCCCTCTGAACCATGCCGATAGAGCTACACGCCTTGAT
CATCCCAGCAGTAGGCGAGATGGAGCAGCATTCTCGGGATATTCGAATCG
TTGGGATGGGGATTGGGATGGGGATTCAACTTCCGTTCTCCCAGTTCATG
GAGAGGGTGACCTTGTGACCTCGTGTGCAGGAGAGTGGGAGAGAGACAAG
TCTGGACGGAAGGAATGTTGCCCTCTACTCTTCAGGAACCGTTTCGCCTC
CGCCTCTACCTCTGTCGCGTAGAAGAGATATATGGGGTGTGCACGGTAGC
GATCCTATATGATCGTGTAATCCACGTGTTCTTCGATCTCAGACGTGTCA
GGGTGCCTAACTGTGCCTACAGCAAAATTTATGTTTTATTTTCATCCCTT
TCTGACCTCAGATCACGGCGATCGGAGTGCGGGCCCTATTCGAGGCGCTC
CGATCGTCCTCCGCAGACAGAATGTCATGTCTGGAGCTCGACTTCAACCC
CCTGGGTGACGCCGGGACACAGCCTTTGCCCGCATATCTCAAGCAGCGGG
CATCTAGGGGAGGGGGCGGGCTCGAGGAGCTCTCGCTACGGTTCTGTGGC
ATTGGGCCTGCAGGGTGCAGGTACAGTGAGCCGCGTGTAGGTGTTTGTTC
TTGGGTGCTTGTGGCATTTTCCTTGGTGTGTGTTGGTACACTCCTCCATG
AACCACCACGGCCGAGGAGAATGGCCAGCTAGCTAGGATCTTCCTTTCCA
CACGTGTTGTTGGCAGGCCACGCTTTCTTCGAGCTCCAACGCTTCGATCA
AGGGCAAAAGCTCCCGCGGCCGTTGCGTCGTTTTCATTCGGTTCATCCCT
TTCCGGTCACCACAACCGTTACCCCCATCCGTTACCCTCCGAGCTACCAC
GCCACGAACCAACCCCGAATGCTCGTATCAGCGTGTCGCGTTCACTTCAG
GCCACCCATATTCGGAAAGCGCGGTCGATTGTGCTGTGTCTAGCATCGAT
TCCATGTGCTCCACTATTGCACTTACTCCCAGGTATATTTCGTCCGCGCT
GGCGAAGAGTGCCACCTCGGCAGCGGCCAGCGAGAACATTGATAGCGAAG
GCAGGAGTGATTCCCGTGGCGGGCGGGTTTCGCTCGGTGTCTTGGGGCAC
GCGCAGAGACATGAAGGTCCCAGCGATGTGGGCACGAAGCGAACGATGCC
CGAGGCGTGGGTCGATGCCGAGAAGGCAGTGGACGGAGAGTCCTCACTCG
TTGGGCCACCATCCTGTGGTGTTCGAAGGCTTCTGTTGACCGGGAATCAA
CTGGGCGACGGCGGTGCACGGTCACTGGCATCTCTCCTGGCGAAAGACAG
CTCCGTGGAAGTGCTGGACCTGACTAGGTGCTACTTGCTGCGAGGGTGAA
ATTCATGCGCTCTGAGGATTCAAGCCTCGTGTCCATGTTTCACCGGGTTT
TCTCGTTTCCCTCCCTAGCGAGCGAGAGAGTTCAGTCGGGAATTCGCAGC
ACGTTGTTGATAAGAGACTCAATTTTCATCAGCTCTTTACGCGCCCGCCC
ATGACTCAGCGAAGCTCTCTGGCGTTCAGCCCAGAGCAATCATGCACCGC
ACACGCCCCACCAGCCTCCGATACTACTGTACTTTATACTGTATCGCGCA
TGTCAACTGTATCAATAGTGGGTGTGGTAAAAGAGAGGCGCACAAAAAAC
GGGCCATGGGATTAGTTGAATATGCAGCACCCGTTACTCAAGCTACCGTG
AGGATTACTGTCCCAGTGCCGGCGGATTCTCGGTGGTGAACGCCATCGGT
ACCCAACTGCGTGATCTGATCAAATCGGGATTGAGTCGATGGCGGTTGAC
GATAGAGATGAGCACCGTCGTGGAAAGCGGGATGAATGAGAGGATCCCCG
GAGTAAGCACCAGAGTCAATCTTCGGAAGAATGAACGGACTGACGCGGGA
TGGAACGGCCGAGCCCGTCTCGCCAGACCAAATTATCAGGCGCGAACGGA
TCACGAGTAGGGTTAGCAACCATATCCGGTTGATCTATACTCTGCTATAT
GTGATCACACACACACACAGACACTATCCACCGAATCCGAGTGTGTAACC
ATTCGGTTGCCCCCCGTCCCCCCCAGCGCATCCTGTTGGCCTTACCCGCT
GATTACATCCCTTCGAAATTGGAATCACGCGCATTCATTCTTGTGTTGTC
TTGGCATTCGATGGTTGGGTATGCTCGGGTACAGGTGCCACATTGGGGAC
GAAGGCGCTCGCTGCCTGGCGGACGCTTTGCGGTCGAACACACGCCTGCG
CGAGCTCAGGTGAACGAAGAGCCTGAGCCCTTGTGTCGCCAGTAAAAAAA
AAGAGCCGCGTCGTCCTCCTCACGTCAACAAAGCACCTACCTCAGTACAG
CAATGTAGCTCACGGATGATCAACAGACAAAAATAACCAATGAGCGATCA
TGACGTAAACCTCGGAGACCAAAATTTCGCCCGAAGCAAGTAATATATAT
ATATATCCTCTCCCTTCACCTCCCCCCTCCACCTTTTCCCCCCCGTTGCG
GCTTCTCCATTGTGACCGCTAACGGGCCGCATCACTTAACCCTCAAATGA
TTTCCCCCCGCGCCCCCTCCTCAAGGCTGTGTTACAACGAAATATCATTC
GAGGGGGCGTCGAGCCTAGCCGCGCTTCTGATCACCAACCGAGGCACCTT
GGAGACCCTAGAACTGGCGGGGAACCGCATCGGCGACAGTGGTGCCTTGG
CGTTAGCTCGGGGCCTCACAGGCACCGATGGCGGTGGTCGTGTGGGAGGC
CTCCGGCGGGAAAAAACTTCGACTTTGGGTCGCCGGGAGGGCGGGCTCAG
ACGACTAAACCTCTCCGGCAACTTCATTGGGTGCGTCGGGGGCTGTGCAC
TCGCTAAAGCGCTTCGTGGAAGTAGTGGGAGGGTGGTTTTGGAAGAGCTG
GAGCTTTCTGGGAACCCGGTAAGCGGCGGGGACGGCCAGGGTATTATGAG
GAAAGAAGTGGGGGGTGGGGGTCCTCTAGGTTGAATGCATCATCAAGTAT
TTTGAACACGAACCCACGAGACGCCTTTTCATTTCCTCCAAAACAAATAT
ACCTTCTTTTAGATATAATATATATCGTATAATTTTCTGAGCGGGCAGTC
AACCTTCGCTCCGCGCGTGCTCCGGCGTGAGTCAAGAGGCTTACCATAGA
GACTCAACCCGTGTCTCCACCGACGGCCTCGCGCGCGCTCGTCTACACAC
ACTTAATCTGCGTGTGGCGTCCGTGACACTCGCTCTCCGCCCTCGCCAGC
TAACGCTCAGTGCGGCCCAAGCCGCCGAAGCCTCCAAGAAGAACGCATTT
CTATACAAGTCGGCGGGCGACGCGCTGTCGTCCCTCCTGAACCAGTTCGT
CGACGAGAGCTACTATCGCCCAGGCGCCTCCCCATCTTCGCCGGGGGGTG
TTGGAGAGCGGGACGATGGAAAATTCCTGCGCTGCGCTGTCGCCGCGTTT
GGGGTCTCGCTCCGCGGCGAGGCTTGTTCGCTAAAGGCCCTGGGGCTGGC
GAGGACGGGAATGACGGATAGCGACGCACTCAAGCTAGCGGCGGCGCTTG
GAGAGAGAAGCGCTGACAGTCCGTTGGCGCACGTGGAGGTTAGCGCGACG
GGGAAATGGGGGGGGGGGGGGGCAGCGGCCGGGCGGCGGGGGAGAGGGGG
GGAGTTGAACGGGAATAAAAAGCCAACCATTCAGGAGAGGTTTAACTTNN
NNNNNNNNGGGGGGGGGGGGGGGGGGGAGGAGGGGGGGGCAGGCCGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATG
CGGTCGTGGCGTCGGTGAGAAGGAGTGTATTGAAGACGAATATGAAGCGC
AACAATTACGATATGGTTATACTTATGGTTCGCAAGGGGCCATAGCCTCC
TTTGGGTTGACTCCCAGCACCACGCCGCATTGCCCCCCTCCCTCTCCCCC
CCCAACCATAAACTTATGTTAAGGTATTCTTGAACGGGCTCGGCGTCGAG
GCGATGGAGGCCGTACGTCTCGCTGTCGAATCTCCCACCGGTCCCGAACA
TTGCAGCGACCCTGACGAGCCTTACCGGTTCGCTGAAGGGCGGCGGGCTT
GGGCAAGAAACCGTGGCAACGGGCGCAGTGCACGCGGCACGCGTCCATCG
CGATCGCGAAGAAAGAGTTACGTTCGCGGAGATGGCAACGACGAGCGAGC
TGTGTTGGGAGAAATGCAGAATTACGCGCCAGTTGGGGGCAACGTGGAGC
TGGAGCTGTTCGGGCGAAAAGTTGCATCCTTTCGTCAGGTGGCGTTACTC
TCTCTCTCTTGCGCATTAAGGGGGTCCCTTTTTTTGATATGTGCTCCAGG
TTCTGAAGTTGTTTTTTCAGTTGGCTTGTAGGTTTGAGTCATTAGCCCGG
AGCTACAACGACGAACCGGTCGATGCAGGTGCAAAATACCCTACACTTCG
ACATTTTTGTTGTTGTTTTCGACTCATTTTGCCGCAAGAAGTTGAGAGCC
AGGTCTAAAATCAATCCTCCTCGCAGTGACGGCACCCGCAATATATCGCT
TCAAACGCCACGACCACCCGCCCCCACTCCCGTTGACGCGCTCGGCGTTG
CGTAACTCCCGAACGGACGGCGCTCGTGGCGGTGCCGTGATTGTTGAAAA
GGAGAGGGTCACGGGATCGGGCTTGGAGGTAAAAGTCTTCGGGAAGCGAG
TACGCTTTGAGCGTCCGTCCGCGGCCTCTACACGTTACTCTAGGGGTGTT
AATATCCCTCGATCCGGTGCCGCGGCGTCTTATAACGGCGGCTGGGACCG
GGATGATGCTGACAGCCACGGTGGTTTTTACGATGAAGACAGCGGCGAAG
AAGTGGATGACGAAGGAGTCGATGAAGAGGATGAAGACGACGACGAAGAA
GTCGATGAAGAGGATGAAGACGACGACGAAGAAGTCGATGAAGACGATGA
AGACGACGACTAAGAAGTCGATGAAGAGGATGAAGACGACGACGAAGAAG
TCGATGAAGAGGATGAAGACGACGACGAAGAAGTCGATGAAGAGGATGAA
GACGACGACGAAGAAGTCGATGAAGAGGATGAAGACGATGACGAAGGAGT
CGATGAAGAGGATGAAGACGACGACGATGACAGTGGCGACGACAGTAGAG
AGGGAGAGCAAGGCCCTCGTTGTTCCCTTCTTGGCGTGAATCGCACCAGT
ATTAACGCGGGAAGAGACAAGGAGGAGCGCGCGGACTGTGAAGACGTTGA
TAGCGAGGCTCGTGACGAGGTGCGAGTAGCAGATAGGGAGAAGAAAAAGG
AACTTAACCCGGGCGGTTCAACGGGCACCAATGTGGCAGCGCGAGTGTTG
CCGACATCTTCACAGTTCGGCGCCCGGGGCGTTGGACTCCGGCAGAGATC
AGTACGAGGGGAAAAGCTCCTGGGCGAATTTCCCGAGAAGGGACAGAGAC
GCAAGGCGAGATTTGAACAAATCGTAGCCGAAACAAAATGGCGGGTTAAG
TCCGTAGAACCCGAACAAGACGCTGGGCTCGATGAATTAACGGATATTTC
ATGCCCATGATACTGGGGCATGAAGCTGTGGCGCGCGAAGCCTGGGGATC
GGATGAAGTGTAGGGACCAAGGGTATCCTGACGCGAATGCGTGTGAGGGG
AATCCTGACGAGAGTGCGCTTGACGTCTTACGGCCTCTCCGAGAGCGAGT
GTCATCTGCCAGCTCACTTTTGACTTGGCGCTGTACATTTATCCGCTGCG
CCGAATGCCACAACTTCCCTTCATAGCAATACATGTTCAGAGAAACCGTG
CGTCCTGTATATATGTATCCACTGCATACATATGCTCGCCTCACCACCAG
TGCTCGACAGCCTAAGCTAAGCGTAAAGCGCGTGTTTGTATTTGTGTGTG
TTTTGTGTGTATTTATTAAATTGGACATAACCGCGCAATCCGGCTCTGTC
ATGCTAGTCATTCTAGGCTAACGCATTGATCCCGTGTGTGTGTGCCAATC
ATACCCAGTACCCGACTCTACGCGATTGCCAATACAGTTTCCGTTCGTGG
TCGGTCTGCTGTGCAGGAAAAAAGAAAAACGCCAGAGATGAAAAGTGTAA
ACAGAAACCATGTGACGATTTTATGCTCAAAGGTAATGTTCTAGGGTCGC
ACATTTTGTACACCTTCGAACATGGCGATAGTTGCTCCCACTGCACACCT
CTCACGGTGCTAAAAAGGCGTGGATGTTCGGAGGGTTGAGATGAGTTCAT
ATGTTTTTTTAAGAAAACGCCAGCGTAAAGTAAAATCCAAACAGTATGTA
ATAAGTAATAAGTTATCTCCCAACCCGATAGTTGTTTTTTTTCCATTCCG
TCACAAAAAGCAGAGTATAAATCAACCGGATTTGGTTGTCAATCCTGCTC
GTGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6493:1617..9471-

>mRNA_H-elongata_contig6493.14079.1 ID=mRNA_H-elongata_contig6493.14079.1|Name=mRNA_H-elongata_contig6493.14079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5046bp|location=Sequence derived from alignment at H-elongata_contig6493:1617..9471- (Himanthalia elongata Himel1 dioecious)
ATGCCTGCAATGGCAAGCAAACGGTTACGACGAAGCGATGGCGTACTCCC
CATCACCACACTCACATGCCTTCTTCTGGTGGAATTGTTTTATGTATGCT
TGGGGTATGCTGAGATTGGAGGTAACCTCGACGATACGGTCACTCCCGCC
AGCGGCCCACAAGCAGTGTCACCCACAATCCAGCTCAACAACGACCGAAC
TAACCAATCTGATGTGGACTTCAGCACCCAGGACAATAGCAGTGGTGGCG
CCGGTGCAGTCATGGTGGAACAAGGTGGCATGATCGATTTTTCCTACTCT
TACATAGTGCCAGGCCACTTGCCTGATCCTGCAGAGCTTCATCCCGCCAT
CGAGGGAGATGACACCACGCCTTCGATGAGCCTAAGCTTGCGTGAATGTT
CCCTGGGAGACGCTGGAGTGTCCGAGCTAGCGCGTTCTCCCTGGGTTTGT
GGGGATATGGCGGCCAGAGCGCTGTCGCTTCGTCATAACCAGATGCCTGC
AATGGCAAGCAAACGGTTACGACGAAGCGATGGCGTACTCCCCATCACCA
CACTCACATGCCTTCTTCTGGTGGAATTGTTTTATGTATGCTTGGGGTAT
GCTGAGATTGGAGGTAACCTCGACGATACGGTCACTCCCGCCAGCGGCCC
ACAAGCAGTGTCACCCACAATCCAGCTCAACAACGACCGAACTAACCAAT
CTGATGTGGACTTCAGCACCCAGGACAATAGCAGTGGTGGCGCCGGTGCA
GTCATGGTGGAACAAGGTGGCATGATCGATTTTTCCTACTCTTACATAGT
GCCAGGCCACTTGCCTGATCCTGCAGAGCTTCATCCCGCCATCGAGGGAG
ATGACACCACGCCTTCGATGAGCCTAAGCTTGCGTGAATGTTCCCTGGGA
GACGCTGGAGTGTCCGAGCTAGCGCGTTCTCCCTGGGTTTGTGGGGATAT
GGCGGCCAGAGCGCTGTCGCTTCGTCATAACCAGATCACGGCGATCGGAG
TGCGGGCCCTATTCGAGGCGCTCCGATCGTCCTCCGCAGACAGAATGTCA
TGTCTGGAGCTCGACTTCAACCCCCTGGGTGACGCCGGGACACAGCCTTT
GCCCGCATATCTCAAGCAGCGGGCATCTAGGGGAGGGGGCGGGCTCGAGG
AGCTCTCGCTACGGTTCTGTGGCATTGGGCCTGCAGGGTGCAGATCACGG
CGATCGGAGTGCGGGCCCTATTCGAGGCGCTCCGATCGTCCTCCGCAGAC
AGAATGTCATGTCTGGAGCTCGACTTCAACCCCCTGGGTGACGCCGGGAC
ACAGCCTTTGCCCGCATATCTCAAGCAGCGGGCATCTAGGGGAGGGGGCG
GGCTCGAGGAGCTCTCGCTACGGTTCTGTGGCATTGGGCCTGCAGGGTGC
AGGTATATTTCGTCCGCGCTGGCGAAGAGTGCCACCTCGGCAGCGGCCAG
CGAGAACATTGATAGCGAAGGCAGGAGTGATTCCCGTGGCGGGCGGGTTT
CGCTCGGTGTCTTGGGGCACGCGCAGAGACATGAAGGTCCCAGCGATGTG
GGCACGAAGCGAACGATGCCCGAGGCGTGGGTCGATGCCGAGAAGGCAGT
GGACGGAGAGTCCTCACTCGTTGGGCCACCATCCTGTGGTGTTCGAAGGC
TTCTGTTGACCGGGAATCAACTGGGCGACGGCGGTGCACGGTCACTGGCA
TCTCTCCTGGCGAAAGACAGCTCCGTGGAAGTGCTGGACCTGACTAGGTA
TATTTCGTCCGCGCTGGCGAAGAGTGCCACCTCGGCAGCGGCCAGCGAGA
ACATTGATAGCGAAGGCAGGAGTGATTCCCGTGGCGGGCGGGTTTCGCTC
GGTGTCTTGGGGCACGCGCAGAGACATGAAGGTCCCAGCGATGTGGGCAC
GAAGCGAACGATGCCCGAGGCGTGGGTCGATGCCGAGAAGGCAGTGGACG
GAGAGTCCTCACTCGTTGGGCCACCATCCTGTGGTGTTCGAAGGCTTCTG
TTGACCGGGAATCAACTGGGCGACGGCGGTGCACGGTCACTGGCATCTCT
CCTGGCGAAAGACAGCTCCGTGGAAGTGCTGGACCTGACTAGGTGCCACA
TTGGGGACGAAGGCGCTCGCTGCCTGGCGGACGCTTTGCGGTCGAACACA
CGCCTGCGCGAGCTCAGGTGCCACATTGGGGACGAAGGCGCTCGCTGCCT
GGCGGACGCTTTGCGGTCGAACACACGCCTGCGCGAGCTCAGGCTGTGTT
ACAACGAAATATCATTCGAGGGGGCGTCGAGCCTAGCCGCGCTTCTGATC
ACCAACCGAGGCACCTTGGAGACCCTAGAACTGGCGGGGAACCGCATCGG
CGACAGTGGTGCCTTGGCGTTAGCTCGGGGCCTCACAGGCACCGATGGCG
GTGGTCGTGTGGGAGGCCTCCGGCGGGAAAAAACTTCGACTTTGGGTCGC
CGGGAGGGCGGGCTCAGACGACTAAACCTCTCCGGCAACTTCATTGGGTG
CGTCGGGGGCTGTGCACTCGCTAAAGCGCTTCGTGGAAGTAGTGGGAGGG
TGGTTTTGGAAGAGCTGGAGCTTTCTGGGAACCCGGCTGTGTTACAACGA
AATATCATTCGAGGGGGCGTCGAGCCTAGCCGCGCTTCTGATCACCAACC
GAGGCACCTTGGAGACCCTAGAACTGGCGGGGAACCGCATCGGCGACAGT
GGTGCCTTGGCGTTAGCTCGGGGCCTCACAGGCACCGATGGCGGTGGTCG
TGTGGGAGGCCTCCGGCGGGAAAAAACTTCGACTTTGGGTCGCCGGGAGG
GCGGGCTCAGACGACTAAACCTCTCCGGCAACTTCATTGGGTGCGTCGGG
GGCTGTGCACTCGCTAAAGCGCTTCGTGGAAGTAGTGGGAGGGTGGTTTT
GGAAGAGCTGGAGCTTTCTGGGAACCCGCTAACGCTCAGTGCGGCCCAAG
CCGCCGAAGCCTCCAAGAAGAACGCATTTCTATACAAGTCGGCGGGCGAC
GCGCTGTCGTCCCTCCTGAACCAGTTCGTCGACGAGAGCTACTATCGCCC
AGGCGCCTCCCCATCTTCGCCGGGGGGTGTTGGAGAGCGGGACGATGGAA
AATTCCTGCGCTGCGCTGTCGCCGCGTTTGGGGTCTCGCTCCGCGGCGAG
GCTTGTTCGCTAAAGGCCCTGGGGCTGGCGAGGACGGGAATGACGGATAG
CGACGCACTCAAGCTAGCGGCGGCGCTTGGAGAGAGAAGCGCTGACAGTC
CGTTGGCGCACGTGGAGCTAACGCTCAGTGCGGCCCAAGCCGCCGAAGCC
TCCAAGAAGAACGCATTTCTATACAAGTCGGCGGGCGACGCGCTGTCGTC
CCTCCTGAACCAGTTCGTCGACGAGAGCTACTATCGCCCAGGCGCCTCCC
CATCTTCGCCGGGGGGTGTTGGAGAGCGGGACGATGGAAAATTCCTGCGC
TGCGCTGTCGCCGCGTTTGGGGTCTCGCTCCGCGGCGAGGCTTGTTCGCT
AAAGGCCCTGGGGCTGGCGAGGACGGGAATGACGGATAGCGACGCACTCA
AGCTAGCGGCGGCGCTTGGAGAGAGAAGCGCTGACAGTCCGTTGGCGCAC
GTGGAGGTATTCTTGAACGGGCTCGGCGTCGAGGCGATGGAGGCCGTACG
TCTCGCTGTCGAATCTCCCACCGGTCCCGAACATTGCAGCGACCCTGACG
AGCCTTACCGGTTCGCTGAAGGGCGGCGGGCTTGGGCAAGAAACCGTGGC
AACGGGCGCAGTGCACGCGGCACGCGTCCATCGCGATCGCGAAGAAAGAG
TTACGTTCGCGGAGATGGCAACGACGAGCGAGCTGTGTTGGGAGAAATGC
AGAATTACGCGCCAGTTGGGGGCAACGTGGAGCTGGAGCTGTTCGGGCGA
AAAGTTGCATCCTTTCGTCAGGTATTCTTGAACGGGCTCGGCGTCGAGGC
GATGGAGGCCGTACGTCTCGCTGTCGAATCTCCCACCGGTCCCGAACATT
GCAGCGACCCTGACGAGCCTTACCGGTTCGCTGAAGGGCGGCGGGCTTGG
GCAAGAAACCGTGGCAACGGGCGCAGTGCACGCGGCACGCGTCCATCGCG
ATCGCGAAGAAAGAGTTACGTTCGCGGAGATGGCAACGACGAGCGAGCTG
TGTTGGGAGAAATGCAGAATTACGCGCCAGTTGGGGGCAACGTGGAGCTG
GAGCTGTTCGGGCGAAAAGTTGCATCCTTTCGTCAGGAGAGGGTCACGGG
ATCGGGCTTGGAGGTAAAAGTCTTCGGGAAGCGAGTACGCTTTGAGCGTC
CGTCCGCGGCCTCTACACGTTACTCTAGGGGTGTTAATATCCCTCGATCC
GGTGCCGCGGCGTCTTATAACGGCGGCTGGGACCGGGATGATGCTGACAG
CCACGGTGGTTTTTACGATGAAGACAGCGGCGAAGAAGTGGATGACGAAG
GAGTCGATGAAGAGGATGAAGACGACGACGAAGAAGTCGATGAAGAGGAT
GAAGACGACGACGAAGAAGAGAGGGTCACGGGATCGGGCTTGGAGGTAAA
AGTCTTCGGGAAGCGAGTACGCTTTGAGCGTCCGTCCGCGGCCTCTACAC
GTTACTCTAGGGGTGTTAATATCCCTCGATCCGGTGCCGCGGCGTCTTAT
AACGGCGGCTGGGACCGGGATGATGCTGACAGCCACGGTGGTTTTTACGA
TGAAGACAGCGGCGAAGAAGTGGATGACGAAGGAGTCGATGAAGAGGATG
AAGACGACGACGAAGAAGTCGATGAAGAGGATGAAGACGACGACGAAGAA
TCGATGAAGAGGATGAAGACGATGACGAAGGAGTCGATGAAGAGGATGAA
GACGACGACGATGACAGTGGCGACGACAGTAGAGAGGGAGAGCAAGGCCC
TCGTTGTTCCCTTCTTGGCGTGATCGATGAAGAGGATGAAGACGATGACG
AAGGAGTCGATGAAGAGGATGAAGACGACGACGATGACAGTGGCGACGAC
AGTAGAGAGGGAGAGCAAGGCCCTCGTTGTTCCCTTCTTGGCGTGA
back to top