mRNA_H-elongata_contig64918.14078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64918.14078.1
Unique NamemRNA_H-elongata_contig64918.14078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 9.000e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   13 RYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 177
            +YTVGT+VQI+P  NTRLSGLYTSGG FCTQCEAEGFRRITFAQDRPDVMSTFSV
Sbjct:  262 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDVMSTFSV 316
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A6H5KYN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.490e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   13 RYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDV 159
            +YTVGT+VQI+P  NTRLSGLYTSGG FCTQCEAEGFRRITFAQDRPDV
Sbjct:   61 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDV 109
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A844YSU6_9SPHN (Aminopeptidase N n=1 Tax=Alteraurantiacibacter buctensis TaxID=1503981 RepID=A0A844YSU6_9SPHN)

HSP 1 Score: 86.3 bits (212), Expect = 2.790e-18
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 PFKRYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 177
            P   +T+G + +I PA NT+LSGLY SGGM CTQCEAEGFRRITF  DRPDV+S +SV
Sbjct:  108 PGTAHTIGLVTRIDPAANTQLSGLYASGGMLCTQCEAEGFRRITFFPDRPDVLSIYSV 165
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: S9SLC7_9RHOB (Aminopeptidase N n=1 Tax=Rubellimicrobium thermophilum DSM 16684 TaxID=1123069 RepID=S9SLC7_9RHOB)

HSP 1 Score: 82.4 bits (202), Expect = 5.670e-18
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 PFKRYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 177
            P + +T   +V+I PARNTRL GLY S GM+CTQCEAEGFRRIT+  DRPDV++ F V
Sbjct:   87 PARAFTWDAVVEIDPARNTRLEGLYLSKGMYCTQCEAEGFRRITYYPDRPDVLAPFRV 144
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A1Z8PYV3_9PROT (Aminopeptidase N n=1 Tax=Micavibrio sp. TMED27 TaxID=1986607 RepID=A0A1Z8PYV3_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 9.710e-18
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 TPFKRYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 177
            TP  R+T+  + +I PA+NTRL GLY SGG FCTQCEAEGFRRIT+  DRPDV++ F+V
Sbjct:   86 TPSDRFTLEIVTKIYPAKNTRLEGLYMSGGNFCTQCEAEGFRRITYFPDRPDVLTVFTV 144
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A3N9U4W6_9GAMM (Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=28256 RepID=A0A3N9U4W6_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 9.710e-18
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   16 YTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSVS 180
            + + T V+ISP  NT LSGLY SGGMFCTQCEAEGFRRITF  DRPDVM+TFS +
Sbjct:   93 FVLDTEVEISPEDNTALSGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFSTT 147
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A6M4FJY9_9GAMM (Aminopeptidase N n=1 Tax=Halomonas sp. PA5 TaxID=2730357 RepID=A0A6M4FJY9_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 9.710e-18
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   13 RYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSVS 180
            R+ + T V+I PA NT LSGLY S GMFCTQCEAEGFRRIT+  DRPDVMSTFS +
Sbjct:   94 RFRLDTQVEIDPAANTALSGLYLSNGMFCTQCEAEGFRRITYYPDRPDVMSTFSTT 149
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: E1V6U2_HALED (Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepID=E1V6U2_HALED)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-17
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   16 YTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSVS 180
            +++ T V+ISP  NT L GLY SGGMFCTQCEAEGFRRITF  DRPDVM+TFS +
Sbjct:   93 FSLDTEVEISPEENTALEGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFSTT 147
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: A0A2N7UCR3_9GAMM (Aminopeptidase N n=1 Tax=Halomonas urumqiensis TaxID=1684789 RepID=A0A2N7UCR3_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-17
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   16 YTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSVS 180
            + + T V+ISPA NT LSGLY S GMFCTQCEAEGFRRITF  DRPDVM+TFS +
Sbjct:   93 FLLDTEVEISPASNTALSGLYQSSGMFCTQCEAEGFRRITFYPDRPDVMATFSTT 147
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BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Match: UPI001C2C3932 (aminopeptidase N n=1 Tax=Paracoccus sp. Z118 TaxID=2851017 RepID=UPI001C2C3932)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 PFKRYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDRPDVMSTFSV 177
            P +R+T+ T V+I P RNT L GLY SGG+FCTQCEAEGFR IT+  DRPDVM+ F V
Sbjct:   87 PHRRFTLSTTVEIHPERNTALEGLYLSGGIFCTQCEAEGFRHITWYPDRPDVMAPFRV 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64918.14078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI9.000e-2589.09Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KYN1_9PHAE5.490e-2187.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A844YSU6_9SPHN2.790e-1867.24Aminopeptidase N n=1 Tax=Alteraurantiacibacter buc... [more]
S9SLC7_9RHOB5.670e-1863.79Aminopeptidase N n=1 Tax=Rubellimicrobium thermoph... [more]
A0A1Z8PYV3_9PROT9.710e-1864.41Aminopeptidase N n=1 Tax=Micavibrio sp. TMED27 Tax... [more]
A0A3N9U4W6_9GAMM9.710e-1872.73Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=282... [more]
A0A6M4FJY9_9GAMM9.710e-1871.43Aminopeptidase N n=1 Tax=Halomonas sp. PA5 TaxID=2... [more]
E1V6U2_HALED1.330e-1770.91Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepI... [more]
A0A2N7UCR3_9GAMM1.330e-1772.73Aminopeptidase N n=1 Tax=Halomonas urumqiensis Tax... [more]
UPI001C2C39321.810e-1765.52aminopeptidase N n=1 Tax=Paracoccus sp. Z118 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64918contigH-elongata_contig64918:434..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.6e-21
Seed eggNOG ortholog2880.D7FQZ3
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGsCOG0308@1,KOG1046@2759
EC3.4.11.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.683161-CDS-H-elongata_contig64918:433..6131622931034.683161-CDS-H-elongata_contig64918:433..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64918 434..613 +
1691679670.7735472-CDS-H-elongata_contig64918:433..6131691679670.7735472-CDS-H-elongata_contig64918:433..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64918 434..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64918.14078.1prot_H-elongata_contig64918.14078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64918 434..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64918.14078.1

>prot_H-elongata_contig64918.14078.1 ID=prot_H-elongata_contig64918.14078.1|Name=mRNA_H-elongata_contig64918.14078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
TPFKRYTVGTIVQISPARNTRLSGLYTSGGMFCTQCEAEGFRRITFAQDR
PDVMSTFSVS
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mRNA from alignment at H-elongata_contig64918:434..613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64918.14078.1 ID=mRNA_H-elongata_contig64918.14078.1|Name=mRNA_H-elongata_contig64918.14078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig64918:434..613+ (Himanthalia elongata Himel1 dioecious)
ACGCCCTTTAAAAGGTATACTGTGGGGACCATTGTACAGATTTCCCCGGC
GCGGAACACACGGCTTTCGGGTCTCTACACCTCCGGAGGCATGTTTTGTA
CCCAGTGCGAGGCCGAAGGGTTTCGACGGATCACGTTCGCCCAGGATCGC
CCCGACGTTATGTCCACATTTTCGGTGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig64918:434..613+

>mRNA_H-elongata_contig64918.14078.1 ID=mRNA_H-elongata_contig64918.14078.1|Name=mRNA_H-elongata_contig64918.14078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig64918:434..613+ (Himanthalia elongata Himel1 dioecious)
ACGCCCTTTAAAAGGTATACTGTGGGGACCATTGTACAGATTTCCCCGGC
GCGGAACACACGGCTTTCGGGTCTCTACACCTCCGGAGGCATGTTTTGTA
CCCAGTGCGAGGCCGAAGGGTTTCGACGGATCACGTTCGCCCAGGATCGC
CCCGACGTTATGTCCACATTTTCGGTGAGTACGCCCTTTAAAAGGTATAC
TGTGGGGACCATTGTACAGATTTCCCCGGCGCGGAACACACGGCTTTCGG
GTCTCTACACCTCCGGAGGCATGTTTTGTACCCAGTGCGAGGCCGAAGGG
TTTCGACGGATCACGTTCGCCCAGGATCGCCCCGACGTTATGTCCACATT
TTCGGTGAGT
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