mRNA_H-elongata_contig64814.14070.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64814.14070.1
Unique NamemRNA_H-elongata_contig64814.14070.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A6H5JKL4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL4_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.470e-91
Identity = 184/303 (60.73%), Postives = 214/303 (70.63%), Query Frame = 1
Query:    1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEG--------TAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPA-----------AG-----SPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSR------------AHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKK 801
            GRK+AVTGALRGCGPAIVKRLLQ+GA+V+AADR MSN+QA AAGL    +G        T +ADA+A GRLV FD+GG GDEDGACRLS LC ESFGGMDGLVCNT+ P+     ++  A           AG     +PL+DLEPSDWADALTGALTEPMLAVKHALPLL+ AC+ G V AGG    +VNV  T+ P S             ++ ETL AA GGL  LTHALA+SSGP+VRVNAVSVPEGSGR + G   +A    R GKD A+AV+FLLSNRAG VTGQNL+VD G + +K
Sbjct:  559 GRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPAGDGDGASAAGTTPEADALAEGRLVFFDMGGAGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDETGGALPNGASFGGGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACATGKVSAGG----IVNVVCTSLPASEIGLAAVSGAGVISNRETLTAAAGGLAGLTHALALSSGPYVRVNAVSVPEGSGRPAAGMTLTARGE-RVGKDAASAVTFLLSNRAGSVTGQNLVVDDGAARRK 856          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: D8LLV4_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 3.000e-91
Identity = 187/299 (62.54%), Postives = 215/299 (71.91%), Query Frame = 1
Query:    1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEG--------TAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPA--------AGS--------PLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSR------------AHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRA-RAGKDTAAAVSFLLSNRAGCVTGQNLIVDGG 786
            GRK+AVTGALRGCGPAIVKRLLQ+GA+V+AADR MSN+QA AAGL    +G        T +ADA+A GRLV FD+GGPGDEDGACRLS LC ESFGGMDGLVCNT+ P+     ++  A        AGS        PL+DLEPSDWADALTGALTEPMLAVKHALPLL+ AC++G V AGG    +VNV  T+ P S             ++ ETL AA GGL  LTHALA+SSGPHVRVNAVSVPEGSGR +   G +A +R  R GKD A+AV+FLLSNRAG VTGQNL+VD G
Sbjct:  997 GRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPADDGDGASAAATTPEADALAEGRLVFFDMGGPGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDEAGGALPNGGSFGAGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACAKGKVSAGG----IVNVVCTSLPASGPGLAAVSGAGAISNRETLTAAAGGLAGLTHALALSSGPHVRVNAVSVPEGSGRPA--AGMTATARGGRVGKDAASAVTFLLSNRAGSVTGQNLVVDDG 1289          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A2A2FWG1_9PSED (Oxidoreductase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2A2FWG1_9PSED)

HSP 1 Score: 121 bits (304), Expect = 9.490e-30
Identity = 114/287 (39.72%), Postives = 135/287 (47.04%), Query Frame = 1
Query:   16 VTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGL--LGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
            VTGA RG G  I   LL+ G SVV AD D    QA A  L  LGV E             V  D+    DE    R  E  +E FG +DGLV N  +     D DS P     L+ L    W   LT +LT   L  KHAL LLRE+           GGA+VN+A T +  S A+ E  AA+ GGLVALTHA+AVS GP +RVNAVS            GW                      +  R    +D  A VSFLLS  AG +TGQNL+ DGGM+ +  Y
Sbjct:    4 VTGAARGIGKGIATSLLRAGWSVVIADIDELAGQAAAEELARLGVVE------------FVTLDVS---DEAAVIRCLERIEEDFGQLDGLVNNAGI----ADPDSGP-----LEQLTLEAWNRWLTTSLTGSFLVSKHALRLLRES-----------GGAIVNIASTRALQSEANTEAYAASKGGLVALTHAMAVSLGPDIRVNAVSP-----------GWIDTRPPALQASDPLRALDHEQHSVGRVGQPEDIGALVSFLLSPEAGFITGQNLVADGGMTRQMLY 244          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A1L3GI14_SYNAC (Short-chain dehydrogenase n=2 Tax=Syntrophotalea acetylenica TaxID=29542 RepID=A0A1L3GI14_SYNAC)

HSP 1 Score: 119 bits (299), Expect = 7.010e-29
Identity = 109/288 (37.85%), Postives = 133/288 (46.18%), Query Frame = 1
Query:   16 VTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRA----------------------RAGK--DTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
            VTG  RG G AIV +LL  G  V  ADRD+   +A          G    D    GRL +F +   GDE G     +   E FG +D L+ N             PA G+PL+ L    W   LT  LT   L  KHA  LLR +            GA+VN+A T +  S  HGE  AA+ GGLVALTHALAVS GP VRVN VS            GW AA+ +                      R G+  D A  V+FL+S  AG +TGQN +VDGGM+ +  Y
Sbjct:   14 VTGGARGIGRAIVDKLLAMGMRVAVADRDVKACEALT--------GQYARD----GRLAVFCMD-VGDEAGVAAAMDQLREKFGRLDALINNAG---------HGPAHGTPLESLALEAWNHILTSNLTGAFLCCKHAAGLLRRSR-----------GAIVNIASTRALQSEPHGEAYAASKGGLVALTHALAVSLGPDVRVNCVSP-----------GWIAAADSQTQGTPGGPILRPEDHAQHPVGRVGRPADIAEIVAFLVSPAAGFITGQNFVVDGGMTRRMVY 257          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A7V1BPU5_9GAMM (SDR family oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A7V1BPU5_9GAMM)

HSP 1 Score: 119 bits (298), Expect = 8.540e-29
Identity = 106/290 (36.55%), Postives = 137/290 (47.24%), Query Frame = 1
Query:    4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
            R   VTGA RG G  +  RLL+DG +VV  D D          ++G Q+   +     A   V  D+    DE       E  +E FG ++GLV N  +     D DS P     ++ L   +W   +T  LT   L  KHA+PLLRE+           GG++VN+A T +  S AH E  AA+ GGLVALTHALA+S GP +RVNAVS            GW                      A  R     D AA V+FLL N AG +TGQNL+ DGGM+ +  Y+
Sbjct:    7 RVALVTGAARGIGRGVALRLLRDGWAVVVGDIDE---------VIG-QDTVEELARFGAVEFVELDVT---DESSVVSCIERIEEDFGQLNGLVNNAGI----ADPDSGP-----VEQLSLEEWNRRITTNLTGAFLLSKHAIPLLRES-----------GGSIVNMASTRAIQSEAHTEAYAASKGGLVALTHALAISLGPTIRVNAVSP-----------GWIDTRPSPQQHGDPLRAIDHDQHAVGRVGQPDDIAALVAFLLGNDAGFITGQNLVADGGMTRQMIYV 252          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A7J4ZNP3_9DELT (Glucose 1-dehydrogenase n=3 Tax=Oryzomonas TaxID=2855184 RepID=A0A7J4ZNP3_9DELT)

HSP 1 Score: 118 bits (295), Expect = 2.580e-28
Identity = 109/285 (38.25%), Postives = 140/285 (49.12%), Query Frame = 1
Query:    1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAA--GLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVS---VPEGSGRSSG----------GGGWSAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
            GR   VTG  +G G  I KRLL++G +VV ADRD +  Q  A   G LG        D +A    V  D+    DE       +     FG +D L+ N    S+P           P++ LE S+W   L   LT   L  KHA+P LR A           GGA+VN+A T +  S A  E  +A+ GGLVALTHALAVS GPH+RVN VS   +     + SG            G   A R    +D A  V++L+S +AG +TGQN IVDGGM+ K  Y+
Sbjct:    7 GRVALVTGGGQGIGKGIAKRLLEEGMAVVIADRDAAAAQETAGEFGSLG--------DVLA----VTLDVA---DEAAVVGALDQTLSRFGRLDALINNAGHGSSPP---------GPVELLELSEWNRVLGTNLTGAFLCAKHAVPALRSA-----------GGAIVNIASTRALQSEADTEAYSASKGGLVALTHALAVSLGPHIRVNCVSPGWIAVDDWKKSGKRTAPELRPEDHGQHPAGRVGRPEDIAGMVAYLVSPQAGFITGQNFIVDGGMTRKMIYV 256          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A6C0TTD0_9PSED (SDR family oxidoreductase n=4 Tax=Pseudomonas TaxID=286 RepID=A0A6C0TTD0_9PSED)

HSP 1 Score: 117 bits (292), Expect = 6.480e-28
Identity = 104/291 (35.74%), Postives = 130/291 (44.67%), Query Frame = 1
Query:    1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
            GR   VTGA RG G  +  RLL+DG SVV AD D +          G QE   +   +     V  D+    DE       E  +E FG +DGLV N  +         A     PL+ L    W   +   LT   L  KHA+ LLR             GGA+VN+A T +  S A  E  AA+ GGL+ALTHA+AVS GP +RVNAVS            GW                      AA R     D AA V+FLL   AG +TGQN ++DGGM+ +  Y+
Sbjct:    6 GRVALVTGAARGIGYGVATRLLRDGWSVVLADIDEA----------GGQEAAEELARLGTVEFVTLDVA---DEASVIACMERVEEDFGQLDGLVNNAGI---------ADPDNGPLEQLSLDSWNRLIGTNLTGAFLLSKHAVGLLRRR-----------GGAIVNMASTRAVQSEAQTEAYAASKGGLIALTHAMAVSLGPEIRVNAVSP-----------GWIDTRPPVQQASDPLRVVDHEQHAAGRVGQPADVAALVAFLLGPDAGFITGQNYLIDGGMTRQMFYV 252          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A550J594_9DELT (Glucose 1-dehydrogenase n=1 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J594_9DELT)

HSP 1 Score: 114 bits (286), Expect = 5.250e-27
Identity = 111/293 (37.88%), Postives = 132/293 (45.05%), Query Frame = 1
Query:    1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW-----------------SAASRA-----RAG--KDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
            GR I VTG  +G G  IV+ LL  GA+VVAAD D               E  A  +   A   +L  +    DE    R  E     FG + GLV N A+         A A   PL+ L   DW   L   LT   L  + ALPLLR            G GAVVN+A T +  S A  E  AA+ GGLVALTHA+A+S GP VRVNA+S            GW                 S A RA     R G  +D AA  +FLL   AG +TGQN +VDGGM+ K  Y
Sbjct:    6 GRTILVTGGAQGIGQGIVRYLLSHGANVVAADID--------------GEACAFLERELASPRLLTVVADVADEIAVRRCLEEVHRRFGSLSGLVNNAAL---------AHAHSGPLEALSLEDWNRVLAVNLTGAFLVTREALPLLRAV----------GDGAVVNIASTRALQSEAECEAYAASKGGLVALTHAMALSLGPEVRVNAISP-----------GWIETGEMQKPSARHPVNHSDADRAQHPVGRVGLPEDIAALAAFLLGPEAGFITGQNFVVDGGMTRKMIY 254          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: D7CTY0_TRURR (Short-chain dehydrogenase/reductase SDR n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CTY0_TRURR)

HSP 1 Score: 114 bits (284), Expect = 1.180e-26
Identity = 110/293 (37.54%), Postives = 130/293 (44.37%), Query Frame = 1
Query:    4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWS--AASRARAGK----------------------DTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
            R++ VTG  +G G A V  LL+ GA V AADRD                  A A+  A    V        DE     L        GG+DGLV N  V              +PL+ L  S W   L   LT   L VKHALP LR A      G      AVVNVA T + +S    E  AA+ GGLVALTHALA+S GP VRVN VS            GW    A + RA +                      D AAAV++LLS  +G VTGQNL+VDGGM+ K  Y+
Sbjct:    8 RRLLVTGGAQGIGLATVAYLLRCGARVAAADRDEE----------------ALAELRARHPEVYAQRSDVSDEPSVAALMAAVSAHLGGLDGLVNNAGV-----------MVSAPLEALSLSAWEAVLGTNLTGAFLCVKHALPHLRAAYGATRGGPEPVSSAVVNVASTRALMSEPDTEAYAASKGGLVALTHALAISLGPAVRVNCVSP-----------GWIEVGALKKRAARTPPEHRPEDHAQHPVGRVGTPEDVAAAVAYLLSPESGFVTGQNLVVDGGMTRKMIYV 262          
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A1I1SHI7_9GAMM (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Thiohalospira halophila DSM 15071 TaxID=1123397 RepID=A0A1I1SHI7_9GAMM)

HSP 1 Score: 113 bits (282), Expect = 1.650e-26
Identity = 107/292 (36.64%), Postives = 138/292 (47.26%), Query Frame = 1
Query:    4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRL---SELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
            R   VTGA RG G  I +RL+ DG  VV AD + +   AR  G              +A R ++ D+     ++ + R    S L +E  G +DGLV N  +        S P +G P+++L+ +DW   L   LT   L  KHALP LREA           GGA+VN+A T +  S    E  AA+ GGLVALTHALAVS+GP VRVN++S            GW                       A R     D AA  +FLL   AG VTGQ+ +VDGGM+ K  Y
Sbjct:    5 RVTLVTGAARGIGFGIARRLVADGGRVVVADIEGAEAAARVLG--------------SAARPLVLDVS----DEASVRAGVASVLAEE--GRLDGLVNNAGI--------SDPESG-PVEELDRADWDRWLAVNLTGAFLLAKHALPALREA-----------GGAIVNIASTRAHQSEPDTEAYAASKGGLVALTHALAVSAGPDVRVNSISP-----------GWIDVRSPEEQAAEPLAPVDHAQHPAGRVGTPADVAALAAFLLGPEAGFVTGQDWVVDGGMTRKMVY 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKL4_9PHAE2.470e-9160.73Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LLV4_ECTSI3.000e-9162.54Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A2A2FWG1_9PSED9.490e-3039.72Oxidoreductase n=4 Tax=Pseudomonadaceae TaxID=1356... [more]
A0A1L3GI14_SYNAC7.010e-2937.85Short-chain dehydrogenase n=2 Tax=Syntrophotalea a... [more]
A0A7V1BPU5_9GAMM8.540e-2936.55SDR family oxidoreductase n=2 Tax=root TaxID=1 Rep... [more]
A0A7J4ZNP3_9DELT2.580e-2838.25Glucose 1-dehydrogenase n=3 Tax=Oryzomonas TaxID=2... [more]
A0A6C0TTD0_9PSED6.480e-2835.74SDR family oxidoreductase n=4 Tax=Pseudomonas TaxI... [more]
A0A550J594_9DELT5.250e-2737.88Glucose 1-dehydrogenase n=1 Tax=Desulfuromonas ace... [more]
D7CTY0_TRURR1.180e-2637.54Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A1I1SHI7_9GAMM1.650e-2636.64NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64814contigH-elongata_contig64814:729..1541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue6.1e-82
Seed eggNOG ortholog2880.D8LLV4
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMyosin head, motor domain
Ec32 orthologEc-14_001810.1
Exons1
Model size813
Cds size813
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.8251796-CDS-H-elongata_contig64814:728..15411622931033.8251796-CDS-H-elongata_contig64814:728..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64814 729..1541 +
1691679670.381564-CDS-H-elongata_contig64814:728..15411691679670.381564-CDS-H-elongata_contig64814:728..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64814 729..1541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64814.14070.1prot_H-elongata_contig64814.14070.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64814 729..1541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64814.14070.1

>prot_H-elongata_contig64814.14070.1 ID=prot_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQE
GTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAV
PSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREA
CSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVS
SGPHVRVNAVSVPEGSGRSSGGGGWSAASRARAGKDTAAAVSFLLSNRAG
CVTGQNLIVDGGMSAKKAYL*
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mRNA from alignment at H-elongata_contig64814:729..1541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64814.14070.1 ID=mRNA_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig64814:729..1541+ (Himanthalia elongata Himel1 dioecious)
GGGCGCAAGATTGCCGTCACGGGCGCGCTTCGCGGCTGCGGCCCCGCCAT CGTAAAGCGTCTTCTACAGGACGGTGCGTCCGTTGTGGCCGCCGACCGTG ACATGTCTAACGACCAGGCCAGAGCCGCGGGCCTTTTGGGCGTTCAAGAA GGCACCGCGCAAGCGGACGCGATCGCCGCCGGCCGGCTCGTCCTCTTCGA CCTCGGAGGTCCCGGAGACGAGGATGGGGCTTGTCGACTGTCGGAGCTCT GCGACGAGTCTTTCGGTGGAATGGACGGTCTCGTGTGTAACACGGCGGTT CCGTCTACCCCCCAAGACCGCGATTCGGCGCCCGCCGCGGGCAGCCCGCT GCAGGACCTGGAGCCCTCTGATTGGGCCGACGCCCTCACGGGGGCGCTGA CCGAGCCCATGCTCGCCGTTAAGCATGCTCTCCCCCTGCTAAGGGAGGCG TGCTCGCAGGGCACCGTTGGCGCGGGAGGCGGAGGCGGCGCGGTCGTCAA CGTGGCATGGACGACCTCTCCGCTTTCCCGAGCGCATGGTGAGACTCTCG CAGCGGCCGGGGGCGGGCTGGTGGCGCTGACACATGCCTTGGCGGTGAGC TCGGGGCCGCACGTCCGTGTGAACGCGGTGAGCGTCCCTGAGGGTAGCGG GAGGAGCTCGGGTGGTGGTGGCTGGTCTGCGGCATCGCGCGCACGCGCGG GAAAAGATACGGCCGCGGCAGTGTCATTTTTGCTGTCGAATCGCGCCGGG TGCGTGACGGGACAAAATTTGATCGTTGACGGCGGTATGTCGGCCAAGAA GGCTTATCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig64814:729..1541+

>mRNA_H-elongata_contig64814.14070.1 ID=mRNA_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig64814:729..1541+ (Himanthalia elongata Himel1 dioecious)
GGGCGCAAGATTGCCGTCACGGGCGCGCTTCGCGGCTGCGGCCCCGCCAT
CGTAAAGCGTCTTCTACAGGACGGTGCGTCCGTTGTGGCCGCCGACCGTG
ACATGTCTAACGACCAGGCCAGAGCCGCGGGCCTTTTGGGCGTTCAAGAA
GGCACCGCGCAAGCGGACGCGATCGCCGCCGGCCGGCTCGTCCTCTTCGA
CCTCGGAGGTCCCGGAGACGAGGATGGGGCTTGTCGACTGTCGGAGCTCT
GCGACGAGTCTTTCGGTGGAATGGACGGTCTCGTGTGTAACACGGCGGTT
CCGTCTACCCCCCAAGACCGCGATTCGGCGCCCGCCGCGGGCAGCCCGCT
GCAGGACCTGGAGCCCTCTGATTGGGCCGACGCCCTCACGGGGGCGCTGA
CCGAGCCCATGCTCGCCGTTAAGCATGCTCTCCCCCTGCTAAGGGAGGCG
TGCTCGCAGGGCACCGTTGGCGCGGGAGGCGGAGGCGGCGCGGTCGTCAA
CGTGGCATGGACGACCTCTCCGCTTTCCCGAGCGCATGGTGAGACTCTCG
CAGCGGCCGGGGGCGGGCTGGTGGCGCTGACACATGCCTTGGCGGTGAGC
TCGGGGCCGCACGTCCGTGTGAACGCGGTGAGCGTCCCTGAGGGTAGCGG
GAGGAGCTCGGGTGGTGGTGGCTGGTCTGCGGCATCGCGCGCACGCGCGG
GAAAAGATACGGCCGCGGCAGTGTCATTTTTGCTGTCGAATCGCGCCGGG
TGCGTGACGGGACAAAATTTGATCGTTGACGGCGGTATGTCGGCCAAGAA
GGCTTATCTGTAGGGGCGCAAGATTGCCGTCACGGGCGCGCTTCGCGGCT
GCGGCCCCGCCATCGTAAAGCGTCTTCTACAGGACGGTGCGTCCGTTGTG
GCCGCCGACCGTGACATGTCTAACGACCAGGCCAGAGCCGCGGGCCTTTT
GGGCGTTCAAGAAGGCACCGCGCAAGCGGACGCGATCGCCGCCGGCCGGC
TCGTCCTCTTCGACCTCGGAGGTCCCGGAGACGAGGATGGGGCTTGTCGA
CTGTCGGAGCTCTGCGACGAGTCTTTCGGTGGAATGGACGGTCTCGTGTG
TAACACGGCGGTTCCGTCTACCCCCCAAGACCGCGATTCGGCGCCCGCCG
CGGGCAGCCCGCTGCAGGACCTGGAGCCCTCTGATTGGGCCGACGCCCTC
ACGGGGGCGCTGACCGAGCCCATGCTCGCCGTTAAGCATGCTCTCCCCCT
GCTAAGGGAGGCGTGCTCGCAGGGCACCGTTGGCGCGGGAGGCGGAGGCG
GCGCGGTCGTCAACGTGGCATGGACGACCTCTCCGCTTTCCCGAGCGCAT
GGTGAGACTCTCGCAGCGGCCGGGGGCGGGCTGGTGGCGCTGACACATGC
CTTGGCGGTGAGCTCGGGGCCGCACGTCCGTGTGAACGCGGTGAGCGTCC
CTGAGGGTAGCGGGAGGAGCTCGGGTGGTGGTGGCTGGTCTGCGGCATCG
CGCGCACGCGCGGGAAAAGATACGGCCGCGGCAGTGTCATTTTTGCTGTC
GAATCGCGCCGGGTGCGTGACGGGACAAAATTTGATCGTTGACGGCGGTA
TGTCGGCCAAGAAGGCTTATCTGTAG
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