mRNA_H-elongata_contig64755.14067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64755.14067.1
Unique NamemRNA_H-elongata_contig64755.14067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64755.14067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64755contigH-elongata_contig64755:699..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_003710.1
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.513389-CDS-H-elongata_contig64755:698..8421622931033.513389-CDS-H-elongata_contig64755:698..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64755 699..842 -
1691679670.2528777-CDS-H-elongata_contig64755:698..8421691679670.2528777-CDS-H-elongata_contig64755:698..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64755 699..842 -
1622931033.5326278-CDS-H-elongata_contig64755:2129..24081622931033.5326278-CDS-H-elongata_contig64755:2129..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64755 2130..2408 -
1691679670.269395-CDS-H-elongata_contig64755:2129..24081691679670.269395-CDS-H-elongata_contig64755:2129..2408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64755 2130..2408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64755.14067.1prot_H-elongata_contig64755.14067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64755 699..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64755.14067.1

>prot_H-elongata_contig64755.14067.1 ID=prot_H-elongata_contig64755.14067.1|Name=mRNA_H-elongata_contig64755.14067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MNPHQEPVDRLLALVSEGISLSKSVLGNERQSARLSERLSALKTPLWQLQ
ARVRTQAERPPDFVYTLSEEVSNCVDVLQELTSPDWWNQICRKDDAAVFH
DLNERLVATVRGDRQFEAALNFPRAADEDRADRIVDFDHLQ
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mRNA from alignment at H-elongata_contig64755:699..2408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64755.14067.1 ID=mRNA_H-elongata_contig64755.14067.1|Name=mRNA_H-elongata_contig64755.14067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1710bp|location=Sequence derived from alignment at H-elongata_contig64755:699..2408- (Himanthalia elongata Himel1 dioecious)
ATGAACCCGCATCAGGAGCCGGTTGACCGCCTTCTGGCGCTCGTGTCGGA
AGGAATATCACTTTCTAAGAGCGTCCTAGGCAATGAGCGCCAATCAGCGA
GGCTTAGCGAGCGGCTCTCCGCTCTGAAAACTCCTCTCTGGCAGCTGCAG
GCACGGGTCAGGACCCAGGCGGAACGACCCCCGGATTTCGTCTACACTCT
CAGCGAAGAGGTGTCCAATTGTGTGGATGTCCTTCAGGAGCTCACGAGTC
CCGACTGGTGGAACCAGATTTGTCGCAAGGTGAATAAGCTGAAATCAAGG
GGGGATAGTTGGATCAACTAAAAATATAATTGGTGTGTCCCTGTCCTGTC
TTTCAGACATAGACTTACGACGTGAAATCACGACGCGCGGGAGGCATTGC
TCCAGCGCTCTCCCGTAATTTTGTGCAGAAACCGCAGATCCGTTGATAAC
TGTATTTTCAGCTCATAGGAAACAATTCCGTTAAGCAAGGCTGGCAAATG
CGTCGCTTCCGAGCTCATCTGGCTATAGTAGCGCCAAGAACTGCTTACTC
TTCTCTGTGCTTCTCTCTAAAGCTTCAGTGTCGACGTAGTTGGTACGGAC
TATTGGTGTGTATATCGCATCGTTCCGGAACGTTACCATTCTAGAACAGT
TTTCCACAGACAAATTTAAAAAATGAGCGCTGTGTGCGCGAGTATAGCTC
TAGACTTGACTTGACAACAAACAGAGGGAGGTAAGTCTTCCTCTCCGTAA
GAATATACGTATCGTACGGCCACATGTACTTGCCGAAAAGCTCTCTAATC
CTACTGCCGCACCTGTGTGCACCAAATAGGATAACACAATTCACTTTTGC
CTGGCGATAGTTGGTCCCCTGGACTGCACCTCTCATGGAGAGCTAAGAAG
GCGGGGACGTTCGGAGGGACAACAACAATGAATTCATATCATATGATATA
TTTTTATTTATTTTTTAAATTGTAAAAATATTGTTCTACAGCTTTTATTA
TTATTCCTATCATACCATGAAGATAACAACAACAACAACAACAACAACAA
CAGCTGGGACACATTATGAATTACTCGTGCAGTATATAATAGTACGGGTC
AGCAGGAGGAGCATAGATTGCTGTGGGTGAGACCTTTCATTGTGCCGACG
GTGGTGGGTCTCTCTCTCCGCTTACACCTCGACACCTCATACCATGCGCC
TCACACACTAGGAACCCCCTTGATGGTAATGCACCAAAAGGAGGCGTGAT
CGATTGGAGCGGAGAGTGCTGCGTGGGGCTGCCTCTATACCGTTGAGACA
CCGTTCGACCAGATATGTTCTGTTTCACTACATCGGTGTCGTGTCTGCTG
CCTCCACGCGCCATAAGTCACCTATAAAAGAGGTGTAATCACGGGTGGGT
GTCGACCATTGCGCTACTCGTACTGAAGATGAGCAGCTGCCACCCAAAAG
TCTGTACGGGCAACGATTCGCGTTCAACGCAGACCCTGTGCGTATTGAAA
CAACCGCTGTTGTTGGTATTGATACTTGCTGCATGCCTGCTGGCTTTTCG
ACAAAAATATTTATAGGACGACGCGGCGGTTTTCCACGACTTGAACGAAC
GTCTGGTAGCTACGGTCCGTGGCGATCGTCAATTCGAGGCCGCGCTCAAC
TTCCCTCGGGCGGCAGACGAGGACCGAGCGGATCGGATCGTCGATTTCGA
CCATCTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig64755:699..2408-

>mRNA_H-elongata_contig64755.14067.1 ID=mRNA_H-elongata_contig64755.14067.1|Name=mRNA_H-elongata_contig64755.14067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig64755:699..2408- (Himanthalia elongata Himel1 dioecious)
ATGAACCCGCATCAGGAGCCGGTTGACCGCCTTCTGGCGCTCGTGTCGGA
AGGAATATCACTTTCTAAGAGCGTCCTAGGCAATGAGCGCCAATCAGCGA
GGCTTAGCGAGCGGCTCTCCGCTCTGAAAACTCCTCTCTGGCAGCTGCAG
GCACGGGTCAGGACCCAGGCGGAACGACCCCCGGATTTCGTCTACACTCT
CAGCGAAGAGGTGTCCAATTGTGTGGATGTCCTTCAGGAGCTCACGAGTC
CCGACTGGTGGAACCAGATTTGTCGCAAGATGAACCCGCATCAGGAGCCG
GTTGACCGCCTTCTGGCGCTCGTGTCGGAAGGAATATCACTTTCTAAGAG
CGTCCTAGGCAATGAGCGCCAATCAGCGAGGCTTAGCGAGCGGCTCTCCG
CTCTGAAAACTCCTCTCTGGCAGCTGCAGGCACGGGTCAGGACCCAGGCG
GAACGACCCCCGGATTTCGTCTACACTCTCAGCGAAGAGGTGTCCAATTG
TGTGGATGTCCTTCAGGAGCTCACGAGTCCCGACTGGTGGAACCAGATTT
GTCGCAAGGACGACGCGGCGGTTTTCCACGACTTGAACGAACGTCTGGTA
GCTACGGTCCGTGGCGATCGTCAATTCGAGGCCGCGCTCAACTTCCCTCG
GGCGGCAGACGAGGACCGAGCGGATCGGATCGTCGATTTCGACCATCTCC
AGGACGACGCGGCGGTTTTCCACGACTTGAACGAACGTCTGGTAGCTACG
GTCCGTGGCGATCGTCAATTCGAGGCCGCGCTCAACTTCCCTCGGGCGGC
AGACGAGGACCGAGCGGATCGGATCGTCGATTTCGACCATCTCCAG
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