mRNA_H-elongata_contig64673.14060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64673.14060.1
Unique NamemRNA_H-elongata_contig64673.14060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64673.14060.1 vs. uniprot
Match: D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.600e-18
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 QTQRWFRCLEANYLKAKCLLLETFLSQLLFEVPTPAMLLTFVGAQQEDLLRRK 159
            QTQRWFRCLEANYLK KC LLE FL+Q LFEVPTP++L+ FVGAQQ   +RR+
Sbjct:  262 QTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFVGAQQPGFVRRR 314
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BLAST of mRNA_H-elongata_contig64673.14060.1 vs. uniprot
Match: A0A835ZFA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.640e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 TQRWFRCLEANYLKAKCLLLETFLSQLLFEVPTPAMLLTFVGAQQEDL 147
            TQRWFRCLEANYL+ KC  LE F+  LLFE+P+P++LLTFV A ++ L
Sbjct:  188 TQRWFRCLEANYLRTKCYYLEKFIGCLLFELPSPSLLLTFVQAPRDIL 235
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BLAST of mRNA_H-elongata_contig64673.14060.1 vs. uniprot
Match: A0A835YXN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.120e-6
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    7 QRWFRCLEANYLKAKCLLLETFLSQLLFEVPTPAMLLTFVGAQQE 141
            Q W+RCL   YL+ KCLLLE +LSQ+LF+ P    LL FV +  +
Sbjct:  170 QPWYRCLNTEYLRRKCLLLEGYLSQVLFDAPEVNQLLEFVASSAQ 214
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BLAST of mRNA_H-elongata_contig64673.14060.1 vs. uniprot
Match: D7G5E1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E1_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.170e-5
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   16 FRCLEANYLKAKCLLLETFLSQLLFEVPTPAMLLTFVG 129
            +RCL  +YL  KC LLETFL Q+LF +PTPA+L+ FV 
Sbjct:  360 YRCLNPDYLAHKCNLLETFLQQVLFAMPTPALLIHFVS 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64673.14060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHG1_ECTSI2.600e-1873.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFA2_9STRA3.640e-1264.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXN3_9STRA6.120e-651.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G5E1_ECTSI2.170e-560.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64673contigH-elongata_contig64673:3050..3208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FHG1
EggNOG OGs2C38U@1,2RHZN@2759
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-25_002530.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.9648335-CDS-H-elongata_contig64673:3049..32081622931032.9648335-CDS-H-elongata_contig64673:3049..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64673 3050..3208 -
1691679670.0167024-CDS-H-elongata_contig64673:3049..32081691679670.0167024-CDS-H-elongata_contig64673:3049..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64673 3050..3208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64673.14060.1prot_H-elongata_contig64673.14060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64673 3050..3208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64673.14060.1

>prot_H-elongata_contig64673.14060.1 ID=prot_H-elongata_contig64673.14060.1|Name=mRNA_H-elongata_contig64673.14060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
QTQRWFRCLEANYLKAKCLLLETFLSQLLFEVPTPAMLLTFVGAQQEDLL
RRK
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mRNA from alignment at H-elongata_contig64673:3050..3208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64673.14060.1 ID=mRNA_H-elongata_contig64673.14060.1|Name=mRNA_H-elongata_contig64673.14060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig64673:3050..3208- (Himanthalia elongata Himel1 dioecious)
CAGACGCAAAGGTGGTTTCGTTGTCTGGAGGCGAACTACCTCAAGGCCAA
GTGCCTCCTTCTCGAGACATTTCTATCCCAGCTTCTGTTCGAGGTGCCGA
CTCCGGCAATGCTTCTGACCTTCGTCGGTGCCCAACAGGAGGACCTCCTC
AGGCGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig64673:3050..3208-

>mRNA_H-elongata_contig64673.14060.1 ID=mRNA_H-elongata_contig64673.14060.1|Name=mRNA_H-elongata_contig64673.14060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig64673:3050..3208- (Himanthalia elongata Himel1 dioecious)
CAGACGCAAAGGTGGTTTCGTTGTCTGGAGGCGAACTACCTCAAGGCCAA
GTGCCTCCTTCTCGAGACATTTCTATCCCAGCTTCTGTTCGAGGTGCCGA
CTCCGGCAATGCTTCTGACCTTCGTCGGTGCCCAACAGGAGGACCTCCTC
AGGCGAAAACAGACGCAAAGGTGGTTTCGTTGTCTGGAGGCGAACTACCT
CAAGGCCAAGTGCCTCCTTCTCGAGACATTTCTATCCCAGCTTCTGTTCG
AGGTGCCGACTCCGGCAATGCTTCTGACCTTCGTCGGTGCCCAACAGGAG
GACCTCCTCAGGCGAAAA
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