mRNA_H-elongata_contig64658.14059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64658.14059.1
Unique NamemRNA_H-elongata_contig64658.14059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.650e-7
Identity = 49/155 (31.61%), Postives = 71/155 (45.81%), Query Frame = 1 
Query:  109 VETETSSGSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGTT------CCISDIEET---CSETGEAPCYIDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCS-ACGGSXXXXXXXXXX-------ISDIEEACSETGEAPCYI 522
            V T T +G+ CSNG +G++S+S   CC ++C  CGG GC+   T+      CC ++I E+   C  +  APC I        T++     S C NG  GV+    + CC   C  +CGG                  I +    CS+T  APC +
Sbjct:   20 VGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCII--------TTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVV 166
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BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.590e-6
Identity = 48/155 (30.97%), Postives = 69/155 (44.52%), Query Frame = 1 
Query:  109 VETETSSGSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGTT------CCISDIEET---CSETGEAPCYIDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCS-ACGGSXXXXXXXXXX-------ISDIEEACSETGEAPCYI 522
            V T T +G+ CSNG +G++S+S   CC + C  CGG  C+   T+      CC ++I E+   C  +  APC I        T++     S C NG  GV     + CC  +C  +CGG                  I +    CS+T  APC +
Sbjct:   20 VGTMTPAGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCII--------TTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVV 166
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BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.980e-5
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  130 GSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGT-------TCCISDIEET---CSETGEAPCYIDDDDSPSPTSS 336
            G TC+NG +G++ + G  CC   C  C G GC++FG+       +CC + I+ +   CSETG APC ID++  PSPT S
Sbjct:   22 GDTCTNGIEGIDGN-GVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEE-GPSPTPS 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LML5_ECTSI1.650e-731.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE2.590e-630.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN1_ECTSI5.980e-543.04Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64658contigH-elongata_contig64658:102..2699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size729
Cds size726
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64658.14059.1prot_H-elongata_contig64658.14059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64658 104..2699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.8344047-CDS-H-elongata_contig64658:103..2551622931032.8344047-CDS-H-elongata_contig64658:103..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 104..255 -
1691679669.9175055-CDS-H-elongata_contig64658:103..2551691679669.9175055-CDS-H-elongata_contig64658:103..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 104..255 -
1622931032.8573408-CDS-H-elongata_contig64658:630..6751622931032.8573408-CDS-H-elongata_contig64658:630..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 631..675 -
1691679669.9417596-CDS-H-elongata_contig64658:630..6751691679669.9417596-CDS-H-elongata_contig64658:630..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 631..675 -
1622931032.8742712-CDS-H-elongata_contig64658:889..10691622931032.8742712-CDS-H-elongata_contig64658:889..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 890..1069 -
1691679669.9556496-CDS-H-elongata_contig64658:889..10691691679669.9556496-CDS-H-elongata_contig64658:889..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 890..1069 -
1622931032.8901453-CDS-H-elongata_contig64658:1351..13871622931032.8901453-CDS-H-elongata_contig64658:1351..1387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 1352..1387 -
1691679669.9731085-CDS-H-elongata_contig64658:1351..13871691679669.9731085-CDS-H-elongata_contig64658:1351..1387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 1352..1387 -
1622931032.9017622-CDS-H-elongata_contig64658:2052..22561622931032.9017622-CDS-H-elongata_contig64658:2052..2256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 2053..2256 -
1691679669.9855523-CDS-H-elongata_contig64658:2052..22561691679669.9855523-CDS-H-elongata_contig64658:2052..2256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 2053..2256 -
1622931032.9165702-CDS-H-elongata_contig64658:2590..26991622931032.9165702-CDS-H-elongata_contig64658:2590..2699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 2591..2699 -
1691679669.9987566-CDS-H-elongata_contig64658:2590..26991691679669.9987566-CDS-H-elongata_contig64658:2590..2699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64658 2591..2699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64658.14059.1

>prot_H-elongata_contig64658.14059.1 ID=prot_H-elongata_contig64658.14059.1|Name=mRNA_H-elongata_contig64658.14059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
ACGGSGCSSFGTTCCISDIEETCSETGEAPCYIDDDVETETSSGSTCSNG
FDGVESSSGKYCCTDDCSACGGSGCSSFGTTCCISDIEETCSETGEAPCY
IDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCSACGGSDCSS
FGTTCCISDIEEACSETGEAPCYIDDDSTSPTPTTSTSTSTDSTSTSTTP
TVVPSPSYPMPVSSPTPVMTIPDSCTDSLPTIRYAESSGVAG
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mRNA from alignment at H-elongata_contig64658:102..2699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64658.14059.1 ID=mRNA_H-elongata_contig64658.14059.1|Name=mRNA_H-elongata_contig64658.14059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2598bp|location=Sequence derived from alignment at H-elongata_contig64658:102..2699- (Himanthalia elongata Himel1 dioecious)
GCCTGTGGCGGCTCTGGCTGCTCCAGCTTCGGGACCACGTGCTGCATCAG
TGATATTGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCTGCTATATCG
ACGACGACGGTACGTCACGAACCAAACTTGCGAGAGTCGAGGCTCCTATT
TCTTACTATCTTATAATCCAATCATCATCCAACACGCCTCCGATACTGCC
TGTGACTGTATCCCACTTACCCACTGTACCAATATTGGGTGTGGGAAAAG
AGAGGCGTACAATAATTGACCATGAGGTTAAATGAATATGCTGCACCCGT
TAGTCATACTATGTAAACAGTACATACTATCTTGCCGATTGATCCCTTTT
TACTCCATACAAAGACAATGTATTTCCGTGTGCATCCGCTATAAAAGCTG
TTTTTAGACGTTTTTTAAGACACTCCTTCCTTGTGTATCGCAGTAGAGAC
AGAAACATCGTCGGGGTCTACGTGCAGCAACGGCTTTGATGGCGTCGAGT
CTAGCAGCGGTAAGTACTGCTGCACGGACGACTGTTCAGCCTGTGGCGGC
TCTGGCTGCTCCAGTTTCGGGACCACGTGCTGCATCAGTGATATCGAAGA
GACGTGCAGCGAAACGGGAGAGGCACCTTGCTACATCGACGACGACGGTA
CGTCACGAACCACTCTTGCGAGAGTCGAGGCTCCTATTTCTTACTATCTT
ATAATCCAATCATCATCCAGCACGCCTCCGATACTGCCTGTGACTGTATC
CCACTTACCCACTGTACCAATATTGGGTGTGGGAAAATAGAGGCGTACAA
GATTTGACCATGAGGTTACATGAATATGCTGCACCCGTTAGTCAAGCTAC
TTTGAGGACTGCTGGCTCAGTGTCGGCAGACTCTCAGTGGTAAACGCCAT
CGGTACGCAATGGTGCAACCTGATAAAATCGAGATTGACTCGATGGCGGT
CGACGGTATAGATGGACGCCGTCGTCGCGGAAAACGAAGATCGAGAGGAT
CCCGAGAGTTGAGAGAATGAGCAGGCTGGCGTGGGATGGGACTGCTGAAC
CCGTCTCGCGAGATCAAATTCTCAGGCGCGAACGGGGTCAGGGTAAATTT
AAGTTTCCCTGTTCAGCCGATCACAAGCAGGAGGTAACCAAATCCGGTTG
ATCTTACTCTGCTATAGATGATGACCACACATCATCAGTCCCTCTCATCT
TGAAGGTGGACGGATTTACATCATCGTGAAATATCGCCTTATTTGTTCCC
TGATTTGCCTCCTCCCGTCTCCAACAACGAACTATGGGACATTGGTCCCG
CATCGGTGGCAGATTCTCCCAGTCCGACATCATCGACGACTCCCACTGGT
GAGTTGAATTTCCGACCAACCGATAGCTCTGAAGTTACAGTTGTTTAATG
TCCGACATTCTTAAATAATCTGTAGATCCTGTTTGTGTCGACCCCCGTGC
GATATAACGCCTTTTTCTTACAACACCCGGCTAAAAGCTCTAACGAAACG
AATAGCAAAAATCAGGACGTTCGTCATTAGAAGAGGGCAATCCCTCATGA
AAGAGGAAAACAAAGTATAGGGCCAAGAGAGATTATATTCAGACTTTGTA
TCGTGTTCATTTCACTCGGAATAATGACAGGATCTACGTGCAGCAACGGC
TTTGATGGCGTCGAGTCTAGCAGCGGTAACTATTGCTGCACGGACGACTG
TTCAGCCTGTGGCGGCTCTGACTGCTCCAGCTTCGGGACCACGTGCTGCA
TCAGTGATATCGAAGAGGCATGCAGCGAAACGGGAGAGGCACCCTGCTAT
ATCGACGACGGTGCGTCCCGACCTATATTGTGTGGCGACATGCGACAACG
CTGATGGAAACTTATCCACGTTTGGAGCTATCCGAGGATCGTTTTAATAT
TTTAATAGTGTAGTCTATCAACCCCCCACCGTCAAGGCGACGTATTTCAA
GCATGCATCGTGCAACATCCTATTCCTCGCACCCATTAAACGTTCCGCAT
ATTCTCCGCCCGTGCCAATAGCAGACTCCACCAGCCCTACTCCAACGACG
TCTACATCTACCTCCACTGGTGAGTTGAACGAACGACCGATGATCTATCC
TCCGGTTTTGTTCTTTCCTATGATTTTCGGCAAATTTATCTCGGAACGCC
TTTTTTTGGCGTGATTGGTTAGAAACGAGGTTAGTCATTTACTTTGAGAC
AAGTGCTTAGGCTATGGTAGCTCCGCGATCGGCAGCCTTAGCTGACTGCA
GTGGTGTACATGCGATATCGTGGTCCTGGGCGACCTTTAAAGCCGTGGTT
TGTTAATTGAGCAATTAATTGTACAGTGCTCATAGGATTTGAATGAGTTC
TTTTTTTTTTTAAGAAAAAAAACGCACGCAACAGCCACAAATTTAGTAAT
ATGCATCCTTACGCTCCTTTACTTTATGTTCTCCTATTCAACAGATTCAA
CTTCAACTTCGACGACGCCAACCGTCGTGCCTAGCCCGAGCTACCCTATG
CCTGTTTCTTCGCCCACCCCCGTCATGACTATCCCGGACTCCTGCACCGA
CTCCCTTCCTACCATCCGCTATGCCGAGTCCTCCGGGGTCGCCGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig64658:102..2699-

>mRNA_H-elongata_contig64658.14059.1 ID=mRNA_H-elongata_contig64658.14059.1|Name=mRNA_H-elongata_contig64658.14059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig64658:102..2699- (Himanthalia elongata Himel1 dioecious)
GCCTGTGGCGGCTCTGGCTGCTCCAGCTTCGGGACCACGTGCTGCATCAG
TGATATTGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCTGCTATATCG
ACGACGACGGCCTGTGGCGGCTCTGGCTGCTCCAGCTTCGGGACCACGTG
CTGCATCAGTGATATTGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCT
GCTATATCGACGACGACGTAGAGACAGAAACATCGTCGGGGTCTACGTGC
AGCAACGGCTTTGATGGCGTCGAGTCTAGCAGCGGTAAGTACTGCTGCAC
GGACGACTGTTCAGCCTGTGGCGGCTCTGGCTGCTCCAGTTTCGGGACCA
CGTGCTGCATCAGTGATATCGAAGAGACGTGCAGCGAAACGGGAGAGGCA
CCTTGCTACATCGACGACGACGTAGAGACAGAAACATCGTCGGGGTCTAC
GTGCAGCAACGGCTTTGATGGCGTCGAGTCTAGCAGCGGTAAGTACTGCT
GCACGGACGACTGTTCAGCCTGTGGCGGCTCTGGCTGCTCCAGTTTCGGG
ACCACGTGCTGCATCAGTGATATCGAAGAGACGTGCAGCGAAACGGGAGA
GGCACCTTGCTACATCGACGACGACGATTCTCCCAGTCCGACATCATCGA
CGACTCCCACTGATTCTCCCAGTCCGACATCATCGACGACTCCCACTGGA
TCTACGTGCAGCAACGGCTTTGATGGCGTCGAGTCTAGCAGCGGTAACTA
TTGCTGCACGGACGACTGTTCAGCCTGTGGCGGCTCTGACTGCTCCAGCT
TCGGGACCACGTGCTGCATCAGTGATATCGAAGAGGCATGCAGCGAAACG
GGAGAGGCACCCTGCTATATCGACGACGGATCTACGTGCAGCAACGGCTT
TGATGGCGTCGAGTCTAGCAGCGGTAACTATTGCTGCACGGACGACTGTT
CAGCCTGTGGCGGCTCTGACTGCTCCAGCTTCGGGACCACGTGCTGCATC
AGTGATATCGAAGAGGCATGCAGCGAAACGGGAGAGGCACCCTGCTATAT
CGACGACGACTCCACCAGCCCTACTCCAACGACGTCTACATCTACCTCCA
CTGACTCCACCAGCCCTACTCCAACGACGTCTACATCTACCTCCACTGAT
TCAACTTCAACTTCGACGACGCCAACCGTCGTGCCTAGCCCGAGCTACCC
TATGCCTGTTTCTTCGCCCACCCCCGTCATGACTATCCCGGACTCCTGCA
CCGACTCCCTTCCTACCATCCGCTATGCCGAGTCCTCCGGGGTCGCCGGT
ATTCAACTTCAACTTCGACGACGCCAACCGTCGTGCCTAGCCCGAGCTAC
CCTATGCCTGTTTCTTCGCCCACCCCCGTCATGACTATCCCGGACTCCTG
CACCGACTCCCTTCCTACCATCCGCTATGCCGAGTCCTCCGGGGTCGCCG
GT
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