mRNA_H-elongata_contig64595.14053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64595.14053.1
Unique NamemRNA_H-elongata_contig64595.14053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.940e-26
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 3
Query:    3 KQAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            KQ MSK+KY+ECS+RGVD+Q D+CKAA +PGFPTWDIDGKLYPGEQ+LEELEEIV
Sbjct:  259 KQVMSKVKYIECSNRGVDNQVDMCKAADIPGFPTWDIDGKLYPGEQTLEELEEIV 313          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.360e-25
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 3
Query:    3 KQAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            K+AMSK+KY+ECS+RGVD+Q D+CKAA +PGFPTWDIDGKLYPGEQ+LEELEEIV
Sbjct:  348 KEAMSKVKYIECSNRGVDNQVDMCKAADIPGFPTWDIDGKLYPGEQTLEELEEIV 402          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: M2X8Y0_GALSU (VKc domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X8Y0_GALSU)

HSP 1 Score: 82.8 bits (203), Expect = 2.530e-17
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    6 QAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEI 164
            +A  KI+YVECS  G DSQ +LC+   VPG+PTW+IDG+LYPGEQS+EELEE+
Sbjct:  323 EAFEKIEYVECSKNGRDSQYNLCREKDVPGYPTWEIDGELYPGEQSVEELEEL 375          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A6T6NYM0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NYM0_9RHOD)

HSP 1 Score: 78.2 bits (191), Expect = 8.330e-17
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 KQAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            K+AM KI YVECS RG +SQA LCK  K+ G+P W+IDGKL+ GEQS+E+ +EI+
Sbjct:   90 KEAMQKIDYVECSERGRNSQAALCKEKKIAGYPAWEIDGKLFFGEQSMEDFDEIL 144          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A1Z5JS18_FISSO (VKc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS18_FISSO)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-16
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 KQAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            K+AM+ I Y+ECS  G+++Q  LCK   VPG+PTW+I+GKLYPGE++L+ELEEIV
Sbjct:  288 KEAMAMIPYIECSRDGLNAQTKLCKEKDVPGYPTWEINGKLYPGEKTLDELEEIV 342          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A7S3P7K1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.430e-16
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 3
Query:    3 KQAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            K+AM +I Y+ECS  G +SQ  LCK  ++PG+PTW+I+GKL+PGEQ+L+EL EIV
Sbjct:  349 KEAMQRIPYIECSREGTNSQVSLCKEKQIPGYPTWEINGKLFPGEQALDELFEIV 403          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A7S2A2R7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2R7_TRICV)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-16
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 QAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            +AM ++ YVECS  G++SQ  +CK   VPG+PTW+I G+LYPGE  LEELEEIV
Sbjct:  175 EAMERVTYVECSKFGLNSQTKMCKERDVPGYPTWEIGGRLYPGEMELEELEEIV 228          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A6T8M9F0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8M9F0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.880e-16
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    6 QAMSKIKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            +A +K+KYVEC+    +SQ  +CK   VPG+PTW+I+GKLYPGEQ +EEL++IV
Sbjct:   99 EAFAKVKYVECAKEAKNSQTKVCKDRDVPGYPTWEINGKLYPGEQDMEELKDIV 152          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A7S4VPD6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPD6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.000e-16
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   21 IKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            + YVEC   G++SQ  LCKA  +PG+PTW+IDGKLYPGEQ L+ELE+IV
Sbjct:  357 VPYVECDREGINSQGKLCKAMDIPGYPTWEIDGKLYPGEQELDELEDIV 405          
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Match: A0A7S2R3K6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3K6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.320e-16
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 3
Query:   21 IKYVECSSRGVDSQADLCKAAKVPGFPTWDIDGKLYPGEQSLEELEEIV 167
            I YVECS  G D+Q  LCK   +PG+PTW+I GKLYPGEQSLEELEEIV
Sbjct:  213 ITYVECSKDGFDAQNKLCKDKNLPGYPTWEIKGKLYPGEQSLEELEEIV 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64595.14053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E2_ECTSI5.940e-2681.82Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE1.360e-2581.82VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
M2X8Y0_GALSU2.530e-1766.04VKc domain-containing protein n=1 Tax=Galdieria su... [more]
A0A6T6NYM0_9RHOD8.330e-1761.82Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1Z5JS18_FISSO1.050e-1661.82VKc domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S3P7K1_9STRA1.430e-1660.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2A2R7_TRICV1.440e-1661.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6T8M9F0_9STRA1.880e-1657.41Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4VPD6_9STRA2.000e-1665.31Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2R3K6_9STRA2.320e-1671.43Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64595contigH-elongata_contig64595:2723..3440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size156
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64595.14053.1prot_H-elongata_contig64595.14053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64595 2734..3440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.2799518-UTR-H-elongata_contig64595:2722..27331622931032.2799518-UTR-H-elongata_contig64595:2722..2733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64595 2723..2733 -
1691679669.6654518-UTR-H-elongata_contig64595:2722..27331691679669.6654518-UTR-H-elongata_contig64595:2722..2733Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64595 2723..2733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.2975845-CDS-H-elongata_contig64595:2733..28521622931032.2975845-CDS-H-elongata_contig64595:2733..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64595 2734..2852 -
1691679669.6756656-CDS-H-elongata_contig64595:2733..28521691679669.6756656-CDS-H-elongata_contig64595:2733..2852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64595 2734..2852 -
1622931032.312659-CDS-H-elongata_contig64595:3403..34401622931032.312659-CDS-H-elongata_contig64595:3403..3440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64595 3404..3440 -
1691679669.6861296-CDS-H-elongata_contig64595:3403..34401691679669.6861296-CDS-H-elongata_contig64595:3403..3440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64595 3404..3440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64595.14053.1

>prot_H-elongata_contig64595.14053.1 ID=prot_H-elongata_contig64595.14053.1|Name=mRNA_H-elongata_contig64595.14053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
ASRRCQKSNTWNARVAGWTVKPIYVKPPRSPVSRRGILTGSFTQANKAWK
S*
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mRNA from alignment at H-elongata_contig64595:2723..3440-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64595.14053.1 ID=mRNA_H-elongata_contig64595.14053.1|Name=mRNA_H-elongata_contig64595.14053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=718bp|location=Sequence derived from alignment at H-elongata_contig64595:2723..3440- (Himanthalia elongata Himel1 dioecious)
GCAAGCAGGCGATGTCAAAAATCAAATACGTGGAATGGTAAGTAGTAATG CCACCTGTCATGCCGTGCTTAAAACCCTTCATCTGCATTCAGCCCTTCAT TTAGAAGGGTTCGTCGATGACCAACAGGTCGGGGCTATCGCTGTAGGCAC GGGGAAGATATTTGCAAAAGGATGTGATTTATCTCTTGTGGGTACCGGAG GGTGACCACGTTGACGTCGTCTACTAGAAAGCTCAACACAAGATAATCCT TGGTTTGGACCCCCCTGACATATCCTTATAAAGGCTGATGAGGAGGTGCC CCTCAAAGGTAAAGCGAGCTGGACGAGAGCACTATAGAACCGAATGCATA CACACATGTTTGTTCCTCGTTTTAACCGCGTGTATGGACCCCATATTTAC CAAACGTATCAAACAGACAAAAAATCAAATATCGTTAGAATAATATTCGC TTTGCCTGCATGACAAAACATGATGCAATCTAGCAAAGGAAAAGGCGTAT TGATACATTTTTTGCACATTCACCTGTCAAAGTGGACTACTTACCCTTGC ATACTTAATCTTTACTCGAATTCATGCGTTACACGCAGCTCGAGTCGCGG GGTGGACAGTCAAGCCGATCTATGTAAAGCCGCCAAGGTCCCCGGTTTCC CGACGTGGGATATTGACGGGAAGCTTTACCCAGGCGAACAAAGCCTGGAA GAGCTAGAGGAGATCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig64595:2723..3440-

>mRNA_H-elongata_contig64595.14053.1 ID=mRNA_H-elongata_contig64595.14053.1|Name=mRNA_H-elongata_contig64595.14053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig64595:2723..3440- (Himanthalia elongata Himel1 dioecious)
GCAAGCAGGCGATGTCAAAAATCAAATACGTGGAATGGCAAGCAGGCGAT
GTCAAAAATCAAATACGTGGAATGCTCGAGTCGCGGGGTGGACAGTCAAG
CCGATCTATGTAAAGCCGCCAAGGTCCCCGGTTTCCCGACGTGGGATATT
GACGGGAAGCTTTACCCAGGCGAACAAAGCCTGGAAGAGCTAGCTCGAGT
CGCGGGGTGGACAGTCAAGCCGATCTATGTAAAGCCGCCAAGGTCCCCGG
TTTCCCGACGTGGGATATTGACGGGAAGCTTTACCCAGGCGAACAAAGCC
TGGAAGAGCTAG
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