mRNA_H-elongata_contig64570.14048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64570.14048.1
Unique NamemRNA_H-elongata_contig64570.14048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 4.950e-68
Identity = 111/116 (95.69%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG KK+ NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERV GESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.290e-62
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAG-GKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKKAAKAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+  E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.040e-61
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+ GE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.250e-60
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAG-GKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKKAAKAPKKA  GKKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+  E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (480), Expect = 2.780e-60
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKAAKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+ GE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.680e-59
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAG--GKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKK G  GK +  KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+  E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.860e-59
Identity = 100/116 (86.21%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKAA APKKAGGK+ + KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+  E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (470), Expect = 9.910e-59
Identity = 97/116 (83.62%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++AKAPKKA    K+ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+  E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.400e-56
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:    7 KTPSKKAAKAPKKAG-GKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            KTPSK++AKAPKKA  G  K+ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+  E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Match: A0A6G0XRP0_9STRA (Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRP0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.390e-56
Identity = 93/114 (81.58%), Postives = 105/114 (92.11%), Query Frame = 1 
Query:   13 PSKKAAKAPKKAGGKKKANK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            P+KK AKAPKK+G +KK+ K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+G E+ KL+RYNKK TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK+TSS
Sbjct:    6 PNKKTAKAPKKSGNEKKSRKTRRVESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIGAEASKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKYTSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64570.14048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI4.950e-6895.69Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A836CJ22_9STRA3.290e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA2.040e-6186.21Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJT3_9STRA2.250e-6089.74Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU2.780e-6085.34Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA2.680e-5983.90Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A6U6DWX5_9STRA2.860e-5986.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B7FWR8_PHATC9.910e-5983.62Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7R9ZTA9_9STRA2.400e-5683.48Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
A0A6G0XRP0_9STRA4.390e-5681.58Histone H2B n=1 Tax=Aphanomyces euteiches TaxID=10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64570contigH-elongata_contig64570:918..1268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue3.7e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.9731312-CDS-H-elongata_contig64570:917..12681622931031.9731312-CDS-H-elongata_contig64570:917..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64570 918..1268 -
1691679669.5502675-CDS-H-elongata_contig64570:917..12681691679669.5502675-CDS-H-elongata_contig64570:917..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64570 918..1268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64570.14048.1prot_H-elongata_contig64570.14048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64570 918..1268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64570.14048.1

>prot_H-elongata_contig64570.14048.1 ID=prot_H-elongata_contig64570.14048.1|Name=mRNA_H-elongata_contig64570.14048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MAKTPSKKAAKAPKKAGGKKKANKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVGGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at H-elongata_contig64570:918..1268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64570.14048.1 ID=mRNA_H-elongata_contig64570.14048.1|Name=mRNA_H-elongata_contig64570.14048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig64570:918..1268- (Himanthalia elongata Himel1 dioecious)
ATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTGG
CGGCAAGAAGAAGGCAAACAAAAGAACCGAGTCTTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAAGTCCACCCGGATACGGGTATCTCCAAACGTGGA
ATGTCCATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGGCGG
CGAGTCAGGCAAGCTCACCCGCTATAACAAAAAGGCAACCCTTTCTTCAC
GTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAAA
CACGCCGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCCTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig64570:918..1268-

>mRNA_H-elongata_contig64570.14048.1 ID=mRNA_H-elongata_contig64570.14048.1|Name=mRNA_H-elongata_contig64570.14048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig64570:918..1268- (Himanthalia elongata Himel1 dioecious)
ATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTGG
CGGCAAGAAGAAGGCAAACAAAAGAACCGAGTCTTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAAGTCCACCCGGATACGGGTATCTCCAAACGTGGA
ATGTCCATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGGCGG
CGAGTCAGGCAAGCTCACCCGCTATAACAAAAAGGCAACCCTTTCTTCAC
GTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAAA
CACGCCGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCCTG
AATGGCTAAAACTCCCTCTAAGAAAGCAGCCAAAGCACCTAAGAAGGCTG
GCGGCAAGAAGAAGGCAAACAAAAGAACCGAGTCTTACTCTTCGTACATC
TACAAGGTGCTCAAGCAAGTCCACCCGGATACGGGTATCTCCAAACGTGG
AATGTCCATAATGAATTCCTTCATTAACGACGTGTTCGAGCGCGTGGGCG
GCGAGTCAGGCAAGCTCACCCGCTATAACAAAAAGGCAACCCTTTCTTCA
CGTGAGGTCCAGACGGCGGTTCGCCTCATGCTTCCAGGAGAGCTCGCAAA
ACACGCCGTATCGGAGGGCACAAAAGCGGTCACTAAATTCACATCATCCT
GA
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