mRNA_H-elongata_contig6456.14046.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6456.14046.1
Unique NamemRNA_H-elongata_contig6456.14046.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6456.14046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6456contigH-elongata_contig6456:950..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6456.14046.1prot_H-elongata_contig6456.14046.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6456 950..2673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.8343878-CDS-H-elongata_contig6456:949..10411622931031.8343878-CDS-H-elongata_contig6456:949..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 950..1041 -
1691679669.4804363-CDS-H-elongata_contig6456:949..10411691679669.4804363-CDS-H-elongata_contig6456:949..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 950..1041 -
1622931031.8549762-CDS-H-elongata_contig6456:1685..18041622931031.8549762-CDS-H-elongata_contig6456:1685..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 1686..1804 -
1691679669.4902513-CDS-H-elongata_contig6456:1685..18041691679669.4902513-CDS-H-elongata_contig6456:1685..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 1686..1804 -
1622931031.873827-CDS-H-elongata_contig6456:2626..26731622931031.873827-CDS-H-elongata_contig6456:2626..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 2627..2673 -
1691679669.507467-CDS-H-elongata_contig6456:2626..26731691679669.507467-CDS-H-elongata_contig6456:2626..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6456 2627..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6456.14046.1

>prot_H-elongata_contig6456.14046.1 ID=prot_H-elongata_contig6456.14046.1|Name=mRNA_H-elongata_contig6456.14046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MFNPVAVRLSEIDSNWCADDFTFNLFIIGSSLQANSFPEDVKGTPSLIVK
NIQKNGLAPTPAPTTSGVTAAPSRDIPAVNITIGNH
back to top

mRNA from alignment at H-elongata_contig6456:950..2673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6456.14046.1 ID=mRNA_H-elongata_contig6456.14046.1|Name=mRNA_H-elongata_contig6456.14046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-elongata_contig6456:950..2673- (Himanthalia elongata Himel1 dioecious)
ATGTTCAATCCCGTCGCGGTTCGTCTATCTGAGATCGACTCAAATTGGTA
AGCAAAATCTTCTGGCGGAAGGAAATCAGTGCCCTGTGCAGGATGGGCGG
AAATACATGGAAGACGTTTTTGAAACAGATACCACTATATCGGCTGAGCT
CATTCCCAACCCTGCTTGTAATTCGTTGAAAAAGGGAAAAAAAAAAAGAA
ACTGAACACAGAAATCCAAAAGTCACCAAATGTAAGCAGTTCAAGGCTAT
AAATCCCACGCAGTGCAGCCCTCTTGTATTGCGATGCAAGGTTTTCTCTC
CTATACCTCGTGACTACTCGGTAAACCCTGTCGTTTGAATGAACGGGTAG
GGGCTGGAGGGAGATTTGCAGTGATAGCCCGTGGAGGTTGTCTAGGCACC
GCGAGTAGGATAAGCCAAATCAACGTCCTCAGGTATAGCTCTCCAAGGGA
AGGAATTGTTTGCATACATACCAGTACGGCACCCCTTTGCTTATCATGCC
GTTTCGTGCGATCTAATTTACGTCGGTAAAAAGGGAAAAGTAGGGCTCGC
TTACTTCCGTAATCCGATCAGTTCCAAAAAGGGATTGGCCAATTTTAACT
CGGACAAGTTTTCCACCCCCAAAGCAACAATACGATTAATATTTTTCGGT
GTGATCTAGTGGATCTATTATTGCTTACTTTGGGCCGATTTAGGGGCGCC
CTTCTTGCACGTTTTTAGTAACCAACGTACATTTTATTGTAATCAGTGTG
CGGGGGGGGATATATAGTGCCAGAAAGAAACCACTGCTTTCATTTCCTGG
GAGATATTGTCCCCCAAAGATATTTTGCAAGATTTGATGGAACGAAATCG
ATCCGTAACCATCGCGCAGGTGTGCTGACGACTTCACGTTCAACTTGTTC
ATCATAGGATCCAGCCTTCAAGCCAATTCCTTCCCGGAAGATGTGAAAGG
GACACCGTCCCTGATTGTCAAGAATATCCAGAAAAATGGTGGGCGTGAGA
TGGTGATACAGAAGGATTGGTTTCTCCTGAAATATATGAAGTTGTGTGCT
ATACCCCGGCCCCTTGGCGTAAACAATCCCTGGCGACAGTCACCAGAGCT
TCGTGCTGAAAGAGCTAAACTCTTTTCGGATTCCCCTGCGAGCTGCTGAA
AAATTCTAGTCATAGATGAAGAGCTAATACTCAATACCAGACAGTGTCTT
ACGTGGGGAACGACGATAAGCACGTACCAGATGCATAAACTATATACGAG
ATGATAGGTGTTAAAATGAACCGCGACAATATGCTGCATATCGAGGTAGG
ACTAGTTTATTCCGATGGCCAATATAAATAGTTCCGCGATAAAGGTGCTA
CATCGTCAGTTACCAAGACTGAACCGAAGCTTAATACCGTACACGAGTGA
CCTCGCGTATGAAGATACGAGCATCACGATCCCAGTTTCAGCCACGGTGC
GCAGCCCAAGAGAGCAGTTTGTTTCAAGTTGATAGACATACAACAGGAAA
AGGATAGGAAATCGTTTACGCACACCGGTACATTCCCCAGCCGCTAAGCG
CTGCATGCCACGAAATGGCGGCCGAAGGAGCGCACTATGATTATTTCCCC
TTTTGCTACGTTTCATTGTTATTACTTTGCAGGTTTGGCTCCTACACCGG
CCCCCACCACTTCAGGGGTAACGGCGGCGCCATCTAGAGATATACCAGCA
GTGAACATCACAATTGGAAACCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6456:950..2673-

>mRNA_H-elongata_contig6456.14046.1 ID=mRNA_H-elongata_contig6456.14046.1|Name=mRNA_H-elongata_contig6456.14046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig6456:950..2673- (Himanthalia elongata Himel1 dioecious)
ATGTTCAATCCCGTCGCGGTTCGTCTATCTGAGATCGACTCAAATTGATG
TTCAATCCCGTCGCGGTTCGTCTATCTGAGATCGACTCAAATTGGTGTGC
TGACGACTTCACGTTCAACTTGTTCATCATAGGATCCAGCCTTCAAGCCA
ATTCCTTCCCGGAAGATGTGAAAGGGACACCGTCCCTGATTGTCAAGAAT
ATCCAGAAAAATGGTGTGCTGACGACTTCACGTTCAACTTGTTCATCATA
GGATCCAGCCTTCAAGCCAATTCCTTCCCGGAAGATGTGAAAGGGACACC
GTCCCTGATTGTCAAGAATATCCAGAAAAATGGTTTGGCTCCTACACCGG
CCCCCACCACTTCAGGGGTAACGGCGGCGCCATCTAGAGATATACCAGCA
GTGAACATCACAATTGGAAACCACGTTTGGCTCCTACACCGGCCCCCACC
ACTTCAGGGGTAACGGCGGCGCCATCTAGAGATATACCAGCAGTGAACAT
CACAATTGGAAACCAC
back to top