mRNA_H-elongata_contig64474.14035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64474.14035.1
Unique NamemRNA_H-elongata_contig64474.14035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 TLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            TL+ID GYWRATN S  +LACYN DAC GG TGSE FC+ GY GP
Sbjct:  546 TLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGP 590
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.450e-14
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 TLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            TL+ID GYWRATN ST VLACYN DAC GG+TG+ ++C  GY GP
Sbjct:  560 TLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGYEGP 604
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 TLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            TL ID GYW ATN ST VLACYN DAC GG+TG+ ++C  GY GP
Sbjct:  567 TLLIDPGYWMATNSSTEVLACYNVDACVGGITGATEYCVEGYEGP 611
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 TLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            TL + +GYWRATN S NVLACYN+DAC GG+T    FC  GY GP
Sbjct: 1318 TLELSSGYWRATNDSANVLACYNEDACVGGMTNDPAFCQRGYEGP 1362
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.130e-11
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 LAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            + ID GYWRAT  +T VLACYN DAC GG+TG   +C  GY GP
Sbjct:  588 IRIDPGYWRATTTTTTVLACYNADACLGGITGEAGYCREGYYGP 631
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 7.130e-10
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    7 LAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            L+ID+GYWRAT  S +VLACY+ +AC GG+T +  +C  GY GP
Sbjct: 1165 LSIDSGYWRATESSEDVLACYHAEACLGGVTATSGYCLEGYEGP 1208
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 TLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            TL++  GYWRA+N S  +LACYN +AC GG TG ++ C  GY GP
Sbjct:  694 TLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGP 738
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    7 LAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            L ++ GYWRA+  S  V ACYN DAC GG+TG   +C  GY GP
Sbjct:  800 LPVERGYWRASPSSEEVFACYNSDACLGGVTGRAGYCLKGYEGP 843
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 LAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP 138
            L+ID+GYWRAT  S ++LACY+ +AC GG+T +  +   GY GP
Sbjct:  894 LSIDSGYWRATESSEDILACYHPEACLGGVTATSGYRLEGYEGP 937
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BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Match: J9HJ18_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HJ18_9SPIT)

HSP 1 Score: 50.1 bits (118), Expect = 8.570e-6
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    7 LAIDAGYWRATNYSTNVLACYNDDACKGG--------LTG---SEDFCSVGYTG 135
            ++++ GYWR+  YS+ V+ C+N++ACKGG        L+G   S D CS GYTG
Sbjct:  862 MSLNKGYWRSQFYSSKVIQCFNENACKGGQLNDPELILSGQVESYDQCSQGYTG 915
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64474.14035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KX12_9PHAE9.340e-1571.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI4.450e-1468.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR67_9PHAE5.400e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY65_9PHAE1.010e-1264.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV1_ECTSI3.130e-1161.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI7.130e-1056.82Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JWT9_9PHAE1.820e-955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI4.660e-954.55Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K1P8_9PHAE3.050e-852.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
J9HJ18_9SPIT8.570e-644.44Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64474contigH-elongata_contig64474:2217..2354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog2880.D7FHH1
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.8874419-CDS-H-elongata_contig64474:2216..23541622931030.8874419-CDS-H-elongata_contig64474:2216..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64474 2217..2354 -
1691679669.115609-CDS-H-elongata_contig64474:2216..23541691679669.115609-CDS-H-elongata_contig64474:2216..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64474 2217..2354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64474.14035.1prot_H-elongata_contig64474.14035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64474 2217..2354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64474.14035.1

>prot_H-elongata_contig64474.14035.1 ID=prot_H-elongata_contig64474.14035.1|Name=mRNA_H-elongata_contig64474.14035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MTLAIDAGYWRATNYSTNVLACYNDDACKGGLTGSEDFCSVGYTGP
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mRNA from alignment at H-elongata_contig64474:2217..2354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64474.14035.1 ID=mRNA_H-elongata_contig64474.14035.1|Name=mRNA_H-elongata_contig64474.14035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig64474:2217..2354- (Himanthalia elongata Himel1 dioecious)
ATGACGCTGGCGATCGATGCTGGGTATTGGCGGGCCACCAACTACAGCAC
CAACGTTTTAGCCTGCTACAACGACGATGCGTGCAAAGGAGGATTGACAG
GTTCTGAAGATTTCTGCAGTGTGGGCTACACAGGGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig64474:2217..2354-

>mRNA_H-elongata_contig64474.14035.1 ID=mRNA_H-elongata_contig64474.14035.1|Name=mRNA_H-elongata_contig64474.14035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig64474:2217..2354- (Himanthalia elongata Himel1 dioecious)
ATGACGCTGGCGATCGATGCTGGGTATTGGCGGGCCACCAACTACAGCAC
CAACGTTTTAGCCTGCTACAACGACGATGCGTGCAAAGGAGGATTGACAG
GTTCTGAAGATTTCTGCAGTGTGGGCTACACAGGGCCAATGACGCTGGCG
ATCGATGCTGGGTATTGGCGGGCCACCAACTACAGCACCAACGTTTTAGC
CTGCTACAACGACGATGCGTGCAAAGGAGGATTGACAGGTTCTGAAGATT
TCTGCAGTGTGGGCTACACAGGGCCA
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