mRNA_H-elongata_contig64455.14033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64455.14033.1
Unique NamemRNA_H-elongata_contig64455.14033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.060e-27
Identity = 90/171 (52.63%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   31 GDIRHALLSLEMAVLGERVRSRESGVSEKPLD---SFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEG---IEGLVGE-GEGG-QRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTDE 519
            GDIRHALL+L+M+V G R RS  +  ++       S          XXXXXXXXX       R +     SK       A   G TG RD FLTQFHALGKLL+AKR P +  G G     G  GE G+GG + RG LAFVPEEVLS+GGM+LDWALAFLQ HCVDF+TDE
Sbjct:  309 GDIRHALLNLQMSV-GGRGRSGSTAAAKAAAAVGRSNGGRGQAMLSXXXXXXXXXXXXXXXGRKKRXXXXSKSCXXXXXA---GGTGQRDTFLTQFHALGKLLYAKRNPPDSDGAGGWPTTGAGGERGDGGVEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDE 475          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.660e-24
Identity = 78/176 (44.32%), Postives = 92/176 (52.27%), Query Frame = 1
Query:    1 TCSLSLSHKTGDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGG---QRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTDE 519
            +C   LS  TGDIRHALL+L+M+V G   R      +       SN          XXXXXX                           +     RD FLTQFHALGKLL+AKR+P +  G G     G G      + RG LAFVPE+VLS+GGM+LDWALAFLQ HCVDF+TDE
Sbjct:  169 SCRTLLSGPTGDIRHALLNLQMSVGG---RGGSGSTAAAAAVGRSNGGRGRAKRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----RDTFLTQFHALGKLLYAKRVPPDSDGAGGWPTAGGGXXXXXXEGRGPLAFVPEDVLSQGGMELDWALAFLQYHCVDFYTDE 336          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: W7TS41_9STRA (Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS41_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.450e-11
Identity = 50/162 (30.86%), Postives = 72/162 (44.44%), Query Frame = 1
Query:   31 GDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 516
            GD+RHA+L+L++ + G R        +    D+ ++S               G    +                           +D +++ FHALGK+LHAKRLP     E  E   GEG+    RGRL+FVPEEVL R  M+ +   AF+Q H +  F D
Sbjct:  587 GDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDXXXXXXXXXXXXXXXXXXEAER-----KDTYMSSFHALGKVLHAKRLP-----ESDESRKGEGD---PRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGD 735          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S2PU50_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU50_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.460e-9
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  286 RDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 516
            RD  L+ FHALGKL+HAKR P+         +  +G     RG L F PE++LSR GM +  A++FL  HC D+FTD
Sbjct:  211 RDTKLSMFHALGKLIHAKRKPLCQDTMEETKMWDDG-----RGPLEFDPEDILSRSGMAVGSAVSFLSYHCPDYFTD 282          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S1D583_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D583_CYCTE)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 37/77 (48.05%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  286 RDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 516
            R   LT FHALGKLL+AKR             +G       RG+L F PEEVL   GM LD A  FLQ + +DFFTD
Sbjct:   99 RAVSLTSFHALGKLLYAKRE---------NSTLG-------RGQLLFDPEEVLETSGMSLDSATTFLQGNGLDFFTD 159          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: B8C3M9_THAPS (RanBP2-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M9_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-6
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  286 RDAFLTQFHALGKLLHAKRLP-VEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 516
            RD  L+ FHALGKLL+AKR P  +      E   G       RG L FVPE+VL +  M    A++F+  H  DFFTD
Sbjct:  683 RDVKLSTFHALGKLLYAKRKPRSQDPYSTTEKRTGISAWDDGRGPLDFVPEQVLEKTDMATSSAISFIAYHSPDFFTD 760          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S1V8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8V5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.720e-6
Identity = 36/91 (39.56%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  253 GTAGTEGTTGARDAFLTQFHALGKLLHAKR---LPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 516
            G+     +TG RD  L+ FHALGK+L+AKR   +PV   GE              R  L F PE+V+    + L  A+ FL  H  DFFTD
Sbjct:   68 GSREPSSSTGKRDTRLSTFHALGKILYAKRQTDVPVSEPGE--------------RPPLQFDPEKVIQHSDLYLTGAVGFLSFHSPDFFTD 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE4.060e-2752.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR72_ECTSI8.660e-2444.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TS41_9STRA7.450e-1130.86Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2PU50_9STRA3.460e-946.75Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1D583_CYCTE1.460e-648.05Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8C3M9_THAPS1.830e-644.87RanBP2-type domain-containing protein n=1 Tax=Thal... [more]
A0A7S1V8V5_9STRA3.720e-639.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64455contigH-elongata_contig64455:335..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue8.5e-21
Seed eggNOG ortholog2880.D7FR72
Preferred nameRAD17
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006282,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035825,GO:0036094,GO:0042325,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2001020
EggNOG free text desc.mitotic DNA replication checkpoint
EggNOG OGsCOG0470@1,KOG1970@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.7292392-CDS-H-elongata_contig64455:334..8531622931030.7292392-CDS-H-elongata_contig64455:334..853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64455 335..853 +
1691679669.070922-CDS-H-elongata_contig64455:334..8531691679669.070922-CDS-H-elongata_contig64455:334..853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64455 335..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64455.14033.1prot_H-elongata_contig64455.14033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64455 335..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64455.14033.1

>prot_H-elongata_contig64455.14033.1 ID=prot_H-elongata_contig64455.14033.1|Name=mRNA_H-elongata_contig64455.14033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
TCSLSLSHKTGDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSSSS
SSSGHDQQQTKRGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFL
TQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSR
GGMDLDWALAFLQCHCVDFFTDE
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mRNA from alignment at H-elongata_contig64455:335..853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64455.14033.1 ID=mRNA_H-elongata_contig64455.14033.1|Name=mRNA_H-elongata_contig64455.14033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig64455:335..853+ (Himanthalia elongata Himel1 dioecious)
ACGTGCTCTCTCTCTCTCTCTCACAAAACAGGCGACATACGACACGCTCT CCTGAGCCTCGAGATGGCTGTGCTGGGCGAAAGGGTCAGAAGTAGAGAGA GTGGCGTTTCCGAGAAGCCGCTCGACAGCTTCAGCAACAGCAGCAGCAGC AGCAGCAGCGGCCACGACCAGCAACAAACGAAACGAGGCAGCAGCAACAG CAATAGGCGTTTCAGAATCCTCGATGGGGTTTCCAAGAAGATGGCGGCGG TGGGAACAGCCGGGACCGAGGGGACCACGGGAGCGAGAGATGCGTTCTTG ACGCAGTTCCACGCGCTCGGGAAGCTCTTGCACGCGAAGCGCTTGCCAGT CGAAGGAAAGGGGGAGGGGATAGAAGGTCTTGTCGGCGAGGGCGAGGGGG GACAAAGGAGGGGAAGGTTGGCATTCGTCCCCGAGGAGGTGCTGTCGCGG GGAGGAATGGACCTAGACTGGGCGCTGGCGTTCCTTCAGTGCCATTGCGT GGATTTCTTCACCGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig64455:335..853+

>mRNA_H-elongata_contig64455.14033.1 ID=mRNA_H-elongata_contig64455.14033.1|Name=mRNA_H-elongata_contig64455.14033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig64455:335..853+ (Himanthalia elongata Himel1 dioecious)
ACGTGCTCTCTCTCTCTCTCTCACAAAACAGGCGACATACGACACGCTCT
CCTGAGCCTCGAGATGGCTGTGCTGGGCGAAAGGGTCAGAAGTAGAGAGA
GTGGCGTTTCCGAGAAGCCGCTCGACAGCTTCAGCAACAGCAGCAGCAGC
AGCAGCAGCGGCCACGACCAGCAACAAACGAAACGAGGCAGCAGCAACAG
CAATAGGCGTTTCAGAATCCTCGATGGGGTTTCCAAGAAGATGGCGGCGG
TGGGAACAGCCGGGACCGAGGGGACCACGGGAGCGAGAGATGCGTTCTTG
ACGCAGTTCCACGCGCTCGGGAAGCTCTTGCACGCGAAGCGCTTGCCAGT
CGAAGGAAAGGGGGAGGGGATAGAAGGTCTTGTCGGCGAGGGCGAGGGGG
GACAAAGGAGGGGAAGGTTGGCATTCGTCCCCGAGGAGGTGCTGTCGCGG
GGAGGAATGGACCTAGACTGGGCGCTGGCGTTCCTTCAGTGCCATTGCGT
GGATTTCTTCACCGACGAGACGTGCTCTCTCTCTCTCTCTCACAAAACAG
GCGACATACGACACGCTCTCCTGAGCCTCGAGATGGCTGTGCTGGGCGAA
AGGGTCAGAAGTAGAGAGAGTGGCGTTTCCGAGAAGCCGCTCGACAGCTT
CAGCAACAGCAGCAGCAGCAGCAGCAGCGGCCACGACCAGCAACAAACGA
AACGAGGCAGCAGCAACAGCAATAGGCGTTTCAGAATCCTCGATGGGGTT
TCCAAGAAGATGGCGGCGGTGGGAACAGCCGGGACCGAGGGGACCACGGG
AGCGAGAGATGCGTTCTTGACGCAGTTCCACGCGCTCGGGAAGCTCTTGC
ACGCGAAGCGCTTGCCAGTCGAAGGAAAGGGGGAGGGGATAGAAGGTCTT
GTCGGCGAGGGCGAGGGGGGACAAAGGAGGGGAAGGTTGGCATTCGTCCC
CGAGGAGGTGCTGTCGCGGGGAGGAATGGACCTAGACTGGGCGCTGGCGT
TCCTTCAGTGCCATTGCGTGGATTTCTTCACCGACGAG
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