mRNA_H-elongata_contig64446.14032.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI) HSP 1 Score: 233 bits (594), Expect = 4.190e-76 Identity = 114/123 (92.68%), Postives = 120/123 (97.56%), Query Frame = 1
Query: 1 SKEIESTKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAE 369
SKEIE TKSAKARGSNLRVH+KHMREVAHLIKGMKLSK+K YLQDVL+YKRAVPFTMFTGGVGRH QGKLPI+KDYMGDPS+KTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLV+NAESNAE
Sbjct: 5 SKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAE 127
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK) HSP 1 Score: 132 bits (333), Expect = 9.610e-37 Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 1
Query: 13 ESTKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
E KS+KA+GS+LRVH+KHMREVAH IKGMKL+K+K +L+DVL +K+AV FT FTGG+G H QGKL +PG+KCRWPQKAT+IVLDL++NAE+NAEV
Sbjct: 9 EPEKSSKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKL-----------------------RKAPGNKCRWPQKATKIVLDLLKNAEANAEV 105
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA) HSP 1 Score: 131 bits (329), Expect = 3.870e-36 Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 22 KSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
++AKARGS+LRVH+KH REV+H IKGM LSK+K +L VLDYK+AVPFT FTGG GRH QGKL + PG KC+WPQKAT+I+LDLV+NAE+NAEV
Sbjct: 13 RAAKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNA-----------------------PGDKCKWPQKATKIILDLVKNAEANAEV 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA) HSP 1 Score: 129 bits (323), Expect = 2.570e-35 Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 1 SKEIES-TKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
S+EI+ K+AKARGS+LRVH+KH+REV+H I G ++ K+KQ+L+DVL YKRAVPFT F GG+GRH QGKL PGS+C WPQKAT+IVLD++ NAESNAEV
Sbjct: 5 SREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKL-----------------------LSVPGSQCAWPQKATKIVLDMLTNAESNAEV 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.420e-35 Identity = 67/118 (56.78%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 19 TKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
T+SAKARG +LRVHYKH REV H IKG L+K+K++L DVL+ K AVPFT +TGG GRH QGKL +PG KCRWPQKATRI+LDLV+NAE+NAE+
Sbjct: 12 TRSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKL-----------------------LNAPGDKCRWPQKATRIILDLVKNAEANAEL 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC) HSP 1 Score: 125 bits (315), Expect = 4.910e-34 Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 19 TKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
++SAK+RGS+LRVH+KH REV H IKG+ + K+K++L+ VL+ K AVPFT FTGGVGRH QGK T +PG KCRWPQKAT+I+LDLV+NAE+NAE+
Sbjct: 12 SRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGK-----------------------TLNAPGDKCRWPQKATKIILDLVKNAEANAEL 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.980e-33 Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 22 KSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
KSAKARGS+LRVH+KH REV I+GMKLSK+K +L+DVL+YK+ VPFT FTGGVGRH Q K +PGSK RWPQKA++IVLDL+ NAE+NAEV
Sbjct: 13 KSAKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAK-----------------------NMKAPGSKGRWPQKASKIVLDLLTNAEANAEV 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A3R7JUX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUX4_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.090e-33 Identity = 64/117 (54.70%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 22 KSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
++AKARGS+LRVH+KH REV+H IKGM L+K+K +LQ V +YK+AVPFT FTGG GRH QGKL + G KC+WPQKAT+I+LDL++NAE+NAEV
Sbjct: 13 RAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVTEYKQAVPFTKFTGGCGRHAQGKL-----------------------RGAAGDKCKWPQKATKIILDLLKNAEANAEV 106
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: A0A2D4CDQ7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDQ7_PYTIN) HSP 1 Score: 131 bits (329), Expect = 7.320e-33 Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 22 KSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
++AKARGS+LRVH+KH REV H IKGM LSK+K +LQ VL+YK+AVPFT FTGG GRH QGKL + PG KC+WPQKAT+I+LDLV+NAE+NAEV
Sbjct: 1558 RAAKARGSHLRVHFKHCREVCHAIKGMPLSKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRNA-----------------------PGDKCKWPQKATKIILDLVKNAEANAEV 1651
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Match: F0WNJ9_9STRA (60S ribosomal protein L172 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WNJ9_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.220e-32 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 22 KSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKRAVPFTMFTGGVGRHPQGKLPISKDYMGDPSTKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVRNAESNAEV 372
++AKARG ++RVH+KH REVAH IK M L K+K++L DVLDYK+AVPFT FTGG GRH QGKL + G KC+WPQK+T+++LDL++NAE+NAE+
Sbjct: 13 RAAKARGQHIRVHFKHCREVAHAIKNMNLIKAKRFLSDVLDYKQAVPFTKFTGGCGRHAQGKL-----------------------RGAAGDKCKWPQKSTKVILDLLKNAEANAEM 106 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64446.14032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64446.14032.1 >prot_H-elongata_contig64446.14032.1 ID=prot_H-elongata_contig64446.14032.1|Name=mRNA_H-elongata_contig64446.14032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp SKEIESTKSAKARGSNLRVHYKHMREVAHLIKGMKLSKSKQYLQDVLDYKback to top mRNA from alignment at H-elongata_contig64446:1405..3311+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64446.14032.1 ID=mRNA_H-elongata_contig64446.14032.1|Name=mRNA_H-elongata_contig64446.14032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-elongata_contig64446:1405..3311+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64446:1405..3311+ >mRNA_H-elongata_contig64446.14032.1 ID=mRNA_H-elongata_contig64446.14032.1|Name=mRNA_H-elongata_contig64446.14032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig64446:1405..3311+ (Himanthalia elongata Himel1 dioecious)back to top |