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Homology
BLAST of mRNA_H-elongata_contig64429.14031.1 vs. uniprot
Match: D8LHL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL0_ECTSI) HSP 1 Score: 298 bits (762), Expect = 3.320e-85 Identity = 245/632 (38.77%), Postives = 308/632 (48.73%), Query Frame = 1
Query: 1 IQAGPGKIGTELLMEPQHGHVRVELQQAKDKPGKDGNGDGDSCGGSGF--FWMSDEELFLHLMRYVGAADLRILSAFNSYVHL------------VTICRAAAATAVPRSPS---------PVDVAATEGSRRSTIVWRQNDTRPAL-ATVVHAVPRAMAA-------MAGSAG-----GPRGSRRREEEDGDG-----VPSETKVPFSLVNLVVHADQRRAPLRTFHFADAPPTLTL--------------RLDAQPRRVGEGKV----------IGSWEQEKQGL---------ERGRTEKENEKVDSSSTE-------------------RCCATCETLPVIRIDDGGISR-----GASAATRGGGRRDRAGRYAGTKANDGXXXXXXXXEANKQLHTLLQNVLEETYNVPVPWAISKEDLIPPATSFASERQAPASRFANRVRHAGTYPPVAASAGLRTPE--------------APSTLVGPSGALPSGLADGGRWFARTVGDGAILLTFLPAWEAWRAEVAQRASVRRKKRSTVAATDVAAEEARKDERRRV---------------GGEDVDDSSLGLFLFLVRMGNFGLPIEPQTAVLRYVRKILLAHIPISYHREMAFKPAQR 1515
+AG G IGTEL MEPQHGHV VE QQ G DS G FWMSD+ELF +L+RYV AADLRILSAF SY++L + R AATA S + P A G RR + RQ+ + A A+ + PR ++ +GS G GS+R DG V SE VP SL+NLVVHADQRRAPLR FHFADA P+L ++ +P R G G +G K+G+ E+G E++ K D+ R CATCE LPV++ID+ G ++ G+ A GG R ++G AN+Q+H LL+ VLE+T NV VPWAI+ DLIPP+ + + +S R G +AG +P AP TL G SG LPS LA GRWF+RT+GDGAILLTFLPA + WR EV+ R RR A EARK + + GG + +D SLGLFLFLVR G+FGLPIEPQ+A LR +R+ILLAHIP S+H+ MAFKPA+R
Sbjct: 324 FEAGHGIIGTELRMEPQHGHVWVERQQ----------GTKDSAGXXXXXSFWMSDKELFQNLIRYVDAADLRILSAFKSYIYLQHKSEAAARMSPIARARDHAATAAKSSAAAAHNSGWDIPGASRAGPGGRRGGVCSRQSSSGSAGGASGMETYPRRQSSPGRVPQSRSGSGXXXXXFGGXGSKRGGARDGGAGDDADVLSEVAVPVSLINLVVHADQRRAPLRMFHFADALPSLPXXXXXXXAHNTPSPRKIRQRPSRGGPGXXXXGGARDSGEVGQLPTTKEGVVMGRGVGAGEKGAEEQQGRKDDAGRQRETVENDDGGCXXXXXXPAARHCATCEALPVVQIDNNGDNKDGDGAGSPAVGDGGQGXXXXXRGRAGSVHEGDL------SANEQMHGLLEKVLEDTQNVSVPWAITSSDLIPPSIYLVANSSSGSSSGIAASRVGGGRSGGHCNAGPASPPTXXXXXXXXXVPGLAPPTLKGASGPLPSELAMRGRWFSRTIGDGAILLTFLPALDEWRKEVSARLEQRR-----------ALREARKTRKWKKSGRKGPGRGGACAGKGGNEDEDDSLGLFLFLVRSGDFGLPIEPQSAKLRDIRRILLAHIPRSHHQAMAFKPARR 928
BLAST of mRNA_H-elongata_contig64429.14031.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 6.670e-10 Identity = 103/423 (24.35%), Postives = 139/423 (32.86%), Query Frame = 1
Query: 1 IQAGPGKIGTELLMEPQHGHVRVELQQAKDKPGKDGNGDGDSCGGSGFFWMSDEELFLHLMRYVGAADLRILSAFNSYVHLVTICRAAAATAVPRSPSP------VDVAATEGSRRSTIVWRQNDTRPALATVVHAVPRAMAAMAGSAGGPRGSRRREEEDGDGVPSETKVPFSLVNLVVHADQRRAPLRTFHFA-DAPPTLTLRLDAQPRRVGEGKVIGSWEQEKQGLERGRTEKENEKVDSSSTERCCATCETLPVIRIDDGGISRGASA----ATRGGGRRDRAGRYAGTKANDGXXXXXXXXEANKQLHTLLQNVLEETYNVPVPWAISKEDLIPPATSFASERQAPASRFANRVRHAGTYPPVAASAGLRTPEAPSTLVGPSGALPSGLADGGRWFARTVGDGAILLTFLPAWEAWRA 1236
A G GTEL MEPQ+G V + G GDS W++D + F L RYV AADL +LSAFN++ + +C A +D++ +R + D V VP S+++L+VHA+ PL+ FHFA A LT E QG + CATC + + D GAS + DR +G AND AN+QL+ +++ L T+ PWA S F G G+LP GRWFAR GA+LLTFLPA++ W A
Sbjct: 1176 FSAPGGVFGTELFMEPQYGFVVADAAAG---------GAGDSAEPR---WINDRDFFELLWRYVHAADLCVLSAFNTFGAVKALCSAXXXXXXXXXXXXXXXXGLLDLSEHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVDFNSADAV----SVPLSMLHLLVHAEAHEVPLQMFHFACRARGALTAA-------------------EHQGAA--------DSXXXXXXXXXCATCSRHRNVVVSDDAQFFGASLQRAPSAEAAAALDREPAVSGASAND--------MLANRQLYAMVEKALRMTHTAEAPWAFSXXXXXXXXXXXXXXXXXXLPLFP----------------------------GEFGSLPETYVRSGRWFARAADHGALLLTFLPAYDEWSA 1519
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1518 |
| Cds size | 1518 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931030.5250251-CDS-H-elongata_contig64429:79..697 | 1622931030.5250251-CDS-H-elongata_contig64429:79..697 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 80..697 - |
| 1691679668.9694076-CDS-H-elongata_contig64429:79..697 | 1691679668.9694076-CDS-H-elongata_contig64429:79..697 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 80..697 - |
| 1622931030.564541-CDS-H-elongata_contig64429:1403..2141 | 1622931030.564541-CDS-H-elongata_contig64429:1403..2141 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 1404..2141 - |
| 1691679668.9824731-CDS-H-elongata_contig64429:1403..2141 | 1691679668.9824731-CDS-H-elongata_contig64429:1403..2141 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 1404..2141 - |
| 1622931030.583238-CDS-H-elongata_contig64429:2976..3138 | 1622931030.583238-CDS-H-elongata_contig64429:2976..3138 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 2977..3138 - |
| 1691679669.002339-CDS-H-elongata_contig64429:2976..3138 | 1691679669.002339-CDS-H-elongata_contig64429:2976..3138 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig64429 2977..3138 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64429.14031.1 >prot_H-elongata_contig64429.14031.1 ID=prot_H-elongata_contig64429.14031.1|Name=mRNA_H-elongata_contig64429.14031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=506bp
IQAGPGKIGTELLMEPQHGHVRVELQQAKDKPGKDGNGDGDSCGGSGFFW MSDEELFLHLMRYVGAADLRILSAFNSYVHLVTICRAAAATAVPRSPSPV DVAATEGSRRSTIVWRQNDTRPALATVVHAVPRAMAAMAGSAGGPRGSRR REEEDGDGVPSETKVPFSLVNLVVHADQRRAPLRTFHFADAPPTLTLRLD AQPRRVGEGKVIGSWEQEKQGLERGRTEKENEKVDSSSTERCCATCETLP VIRIDDGGISRGASAATRGGGRRDRAGRYAGTKANDGGGGGEDDDEANKQ LHTLLQNVLEETYNVPVPWAISKEDLIPPATSFASERQAPASRFANRVRH AGTYPPVAASAGLRTPEAPSTLVGPSGALPSGLADGGRWFARTVGDGAIL LTFLPAWEAWRAEVAQRASVRRKKRSTVAATDVAAEEARKDERRRVGGED VDDSSLGLFLFLVRMGNFGLPIEPQTAVLRYVRKILLAHIPISYHREMAF KPAQR* back to topmRNA from alignment at H-elongata_contig64429:80..3138- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig64429.14031.1 ID=mRNA_H-elongata_contig64429.14031.1|Name=mRNA_H-elongata_contig64429.14031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3059bp|location=Sequence derived from alignment at H-elongata_contig64429:80..3138- (Himanthalia elongata Himel1 dioecious) ATCCAGGCGGGCCCCGGAAAAATTGGCACTGAGCTGCTGATGGAACCCCA
GCACGGACACGTTCGCGTGGAGCTGCAACAAGCGAAGGATAAGCCTGGAA
AGGATGGCAACGGCGACGGCGACAGCTGTGGCGGCAGCGGTTTCTTTTGG
ATGTCTGATGAGGTGCGGCGCGGTTACAATCTGATGGAATTTGGAGTCAC
GCGTGGTGTGTGATGGTGCGGTCTGCGCGACGAGTAGCTAGCCTTAACCC
GGTGGGCACCACGTCATAGATAGCGAGAGAGAGAAAGCTATACGTTTACT
GTTCCTGGTTCTCGTGCGTTTCGACGATTTTTAATGGCTCCTGTGAAAGC
GGTTGTGCTTTCTGCTCGGTCCTCTGGAATCTTTTGGGGGAAGGAATGCT
GTGGCATGGCACCGTTCGTGGCGCATCGCGCACTGGCGATGTTTGTACGT
CATTCATGGATTTGAGGCTCTCAAGAAAGGACAAAAAAATGTTGATGTAG
CGGAATTAAGGCCCGAGAACGTGAGGTAGTAAAGGTCAGATATTGGTCGA
CGAGATCTACCACAGGAGAGCCGAGCTTGCATCGCGAAAAAAAAGCGCAG
GCTTGAACCGACGAGAAGTGTATAGATCCCCTTAGGACCTCACAGGCAGA
AGAAGGGATGGGGCAACGTTATTATGGTTGGTGGGATTGGTAACCTAGCG
CGTTGAATGACGTATACCCTATCGCCAGAAAGTGCTAACAAGCAAAACCT
GTCTTCCCCCAAAATAGCATCAGCAGTAGGAGAACCAACACGAAGGCAAA
GAGTGCCGAGATATATTTTTTTTTTCGTAACCCGGGTGTGTTTACGATAG
CTTCACGGTCGTTGCTTGCCAAAAAGATTCTTTCCCCCCCCCCCCCCGCT
TTCTCCGTTCCTTGTCTCCCTTCCGCTCGCTAATACCCCCTACCCTACGC
CCCCACCCACTAAAAAAAACAAAACAACAAAACATACACACGAACAGGAA
CTTTTCCTCCACCTGATGCGCTACGTGGGCGCCGCGGACCTGCGGATCTT
GTCGGCATTCAACAGCTACGTCCACCTGGTCACCATTTGCAGAGCAGCAG
CGGCGACGGCCGTCCCCCGATCCCCCTCCCCTGTAGACGTCGCGGCGACT
GAGGGCTCGAGGAGAAGCACGATCGTGTGGCGTCAGAATGACACTCGACC
GGCATTGGCGACGGTGGTGCATGCGGTGCCTCGCGCGATGGCAGCAATGG
CGGGAAGCGCAGGTGGCCCCCGCGGATCACGCAGGCGAGAAGAGGAGGAC
GGGGACGGCGTTCCATCCGAGACGAAGGTTCCGTTCAGTCTCGTGAACTT
GGTAGTGCACGCGGACCAGCGCCGCGCCCCCCTGCGCACGTTCCACTTCG
CGGACGCGCCGCCGACTCTGACGCTACGACTGGACGCGCAACCGCGCCGC
GTCGGCGAAGGGAAGGTTATTGGTAGTTGGGAGCAGGAAAAACAAGGGTT
GGAACGGGGAAGAACGGAGAAGGAAAATGAAAAGGTGGACAGTTCTTCGA
CCGAGCGCTGCTGTGCGACGTGCGAGACTCTGCCCGTGATTCGCATCGAC
GATGGGGGCATTAGCAGAGGGGCGAGCGCGGCGACGAGAGGAGGAGGCAG
ACGCGATCGTGCGGGCAGATATGCCGGTACAAAAGCAAATGATGGCGGCG
GGGGTGGCGAAGACGATGACGAAGCAAACAAACAGGTCCTTGTCCATTCG
TGTGCCGGGTGCGCGCAAGGGGTGTAGGGGAGCAGGGGCTTAAGCTCATA
AGCGCGTTATCTAGGCTTATGATCGTGGGGTGTGCGGATCTTTTCGAGTT
GGGCCGAAAACGTGTGCGATTCGTGTAGCATGGTGGCGAAGCACGGCGTT
TCGAGACGCGGTGTGACACATATATCTGAAGGTGATTTCGGGGTTTGGTA
ATAATTATGTTGCATAGTCCTGTCGAACTGGCGGTGTGTGGAGGGGAGGA
ACTTCCATCCCTTGGATGCGTCGTATCATATGCTGCTATATACTGCGTAT
TCTATATTATAGTATAAATATATATATACATAAAATCGTACATATACTTA
GTATATCGCCGACAAAAAAGCCGGGGTCAGCGCAACCGGAAAAACCAAGA
CGGGGTTCTCACGTGTAACGCTCTACGTGCATGCCAGTGTCAAAAGGGTG
CGCAACTCTATTTATTTCTGCTGATACGTCTACGAGTGATAGGGTCGCTA
AATTGAGTAACTTCATTTGTTCGCCTGCTTTAGTCTTCGTTGCGCCTCAA
GGACACGAACACCACCTCCGCACGAAACGATCGTTGCGTGTGTGATATGG
GACGAGGCACCAACTAGACAATCAATCTAACTATCAACCAATCGCTATCG
CACCCCCTTCTCTCACTATATCTCTCTTGTCTCCAACAAAGCTGCACACC
TTGCTGCAAAACGTGCTCGAGGAGACATACAACGTCCCAGTCCCGTGGGC
GATATCGAAGGAGGATCTCATCCCGCCCGCGACGTCCTTTGCATCGGAAA
GACAGGCTCCAGCCTCCCGTTTCGCGAACCGGGTGCGCCACGCGGGCACC
TATCCTCCTGTCGCCGCTTCCGCTGGGTTGCGAACGCCGGAGGCGCCGTC
CACCCTCGTTGGGCCCTCGGGGGCGCTGCCGTCGGGACTCGCGGACGGCG
GCCGCTGGTTTGCGCGCACGGTTGGCGACGGAGCCATTCTACTGACGTTT
CTCCCTGCATGGGAGGCTTGGCGTGCGGAGGTAGCCCAGCGCGCATCCGT
CCGGAGGAAAAAACGATCGACAGTGGCGGCGACTGATGTTGCGGCTGAGG
AAGCGAGAAAGGACGAGCGGCGGCGGGTGGGGGGCGAGGACGTGGACGAC
TCTTCGCTCGGTCTTTTTTTGTTTCTGGTGCGCATGGGAAACTTTGGCCT
GCCGATCGAGCCGCAGACCGCGGTGCTGCGTTACGTGAGGAAAATCCTGC
TGGCGCACATCCCGATCAGTTACCACCGGGAGATGGCGTTCAAGCCGGCG
CAGCGGTAA back to topCoding sequence (CDS) from alignment at H-elongata_contig64429:80..3138- >mRNA_H-elongata_contig64429.14031.1 ID=mRNA_H-elongata_contig64429.14031.1|Name=mRNA_H-elongata_contig64429.14031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3036bp|location=Sequence derived from alignment at H-elongata_contig64429:80..3138- (Himanthalia elongata Himel1 dioecious) ATCCAGGCGGGCCCCGGAAAAATTGGCACTGAGCTGCTGATGGAACCCCA GCACGGACACGTTCGCGTGGAGCTGCAACAAGCGAAGGATAAGCCTGGAA AGGATGGCAACGGCGACGGCGACAGCTGTGGCGGCAGCGGTTTCTTTTGG ATGTCTGATGAGATCCAGGCGGGCCCCGGAAAAATTGGCACTGAGCTGCT GATGGAACCCCAGCACGGACACGTTCGCGTGGAGCTGCAACAAGCGAAGG ATAAGCCTGGAAAGGATGGCAACGGCGACGGCGACAGCTGTGGCGGCAGC GGTTTCTTTTGGATGTCTGATGAGGAACTTTTCCTCCACCTGATGCGCTA CGTGGGCGCCGCGGACCTGCGGATCTTGTCGGCATTCAACAGCTACGTCC ACCTGGTCACCATTTGCAGAGCAGCAGCGGCGACGGCCGTCCCCCGATCC CCCTCCCCTGTAGACGTCGCGGCGACTGAGGGCTCGAGGAGAAGCACGAT CGTGTGGCGTCAGAATGACACTCGACCGGCATTGGCGACGGTGGTGCATG CGGTGCCTCGCGCGATGGCAGCAATGGCGGGAAGCGCAGGTGGCCCCCGC GGATCACGCAGGCGAGAAGAGGAGGACGGGGACGGCGTTCCATCCGAGAC GAAGGTTCCGTTCAGTCTCGTGAACTTGGTAGTGCACGCGGACCAGCGCC GCGCCCCCCTGCGCACGTTCCACTTCGCGGACGCGCCGCCGACTCTGACG CTACGACTGGACGCGCAACCGCGCCGCGTCGGCGAAGGGAAGGTTATTGG TAGTTGGGAGCAGGAAAAACAAGGGTTGGAACGGGGAAGAACGGAGAAGG AAAATGAAAAGGTGGACAGTTCTTCGACCGAGCGCTGCTGTGCGACGTGC GAGACTCTGCCCGTGATTCGCATCGACGATGGGGGCATTAGCAGAGGGGC GAGCGCGGCGACGAGAGGAGGAGGCAGACGCGATCGTGCGGGCAGATATG CCGGTACAAAAGCAAATGATGGCGGCGGGGGTGGCGAAGACGATGACGAA GCAAACAAACAGGAACTTTTCCTCCACCTGATGCGCTACGTGGGCGCCGC GGACCTGCGGATCTTGTCGGCATTCAACAGCTACGTCCACCTGGTCACCA TTTGCAGAGCAGCAGCGGCGACGGCCGTCCCCCGATCCCCCTCCCCTGTA GACGTCGCGGCGACTGAGGGCTCGAGGAGAAGCACGATCGTGTGGCGTCA GAATGACACTCGACCGGCATTGGCGACGGTGGTGCATGCGGTGCCTCGCG CGATGGCAGCAATGGCGGGAAGCGCAGGTGGCCCCCGCGGATCACGCAGG CGAGAAGAGGAGGACGGGGACGGCGTTCCATCCGAGACGAAGGTTCCGTT CAGTCTCGTGAACTTGGTAGTGCACGCGGACCAGCGCCGCGCCCCCCTGC GCACGTTCCACTTCGCGGACGCGCCGCCGACTCTGACGCTACGACTGGAC GCGCAACCGCGCCGCGTCGGCGAAGGGAAGGTTATTGGTAGTTGGGAGCA GGAAAAACAAGGGTTGGAACGGGGAAGAACGGAGAAGGAAAATGAAAAGG TGGACAGTTCTTCGACCGAGCGCTGCTGTGCGACGTGCGAGACTCTGCCC GTGATTCGCATCGACGATGGGGGCATTAGCAGAGGGGCGAGCGCGGCGAC GAGAGGAGGAGGCAGACGCGATCGTGCGGGCAGATATGCCGGTACAAAAG CAAATGATGGCGGCGGGGGTGGCGAAGACGATGACGAAGCAAACAAACAG CTGCACACCTTGCTGCAAAACGTGCTCGAGGAGACATACAACGTCCCAGT CCCGTGGGCGATATCGAAGGAGGATCTCATCCCGCCCGCGACGTCCTTTG CATCGGAAAGACAGGCTCCAGCCTCCCGTTTCGCGAACCGGGTGCGCCAC GCGGGCACCTATCCTCCTGTCGCCGCTTCCGCTGGGTTGCGAACGCCGGA GGCGCCGTCCACCCTCGTTGGGCCCTCGGGGGCGCTGCCGTCGGGACTCG CGGACGGCGGCCGCTGGTTTGCGCGCACGGTTGGCGACGGAGCCATTCTA CTGACGTTTCTCCCTGCATGGGAGGCTTGGCGTGCGGAGGTAGCCCAGCG CGCATCCGTCCGGAGGAAAAAACGATCGACAGTGGCGGCGACTGATGTTG CGGCTGAGGAAGCGAGAAAGGACGAGCGGCGGCGGGTGGGGGGCGAGGAC GTGGACGACTCTTCGCTCGGTCTTTTTTTGTTTCTGGTGCGCATGGGAAA CTTTGGCCTGCCGATCGAGCCGCAGACCGCGGTGCTGCGTTACGTGAGGA AAATCCTGCTGGCGCACATCCCGATCAGTTACCACCGGGAGATGGCGTTC AAGCCGGCGCAGCGGTAACTGCACACCTTGCTGCAAAACGTGCTCGAGGA GACATACAACGTCCCAGTCCCGTGGGCGATATCGAAGGAGGATCTCATCC CGCCCGCGACGTCCTTTGCATCGGAAAGACAGGCTCCAGCCTCCCGTTTC GCGAACCGGGTGCGCCACGCGGGCACCTATCCTCCTGTCGCCGCTTCCGC TGGGTTGCGAACGCCGGAGGCGCCGTCCACCCTCGTTGGGCCCTCGGGGG CGCTGCCGTCGGGACTCGCGGACGGCGGCCGCTGGTTTGCGCGCACGGTT GGCGACGGAGCCATTCTACTGACGTTTCTCCCTGCATGGGAGGCTTGGCG TGCGGAGGTAGCCCAGCGCGCATCCGTCCGGAGGAAAAAACGATCGACAG TGGCGGCGACTGATGTTGCGGCTGAGGAAGCGAGAAAGGACGAGCGGCGG CGGGTGGGGGGCGAGGACGTGGACGACTCTTCGCTCGGTCTTTTTTTGTT TCTGGTGCGCATGGGAAACTTTGGCCTGCCGATCGAGCCGCAGACCGCGG TGCTGCGTTACGTGAGGAAAATCCTGCTGGCGCACATCCCGATCAGTTAC CACCGGGAGATGGCGTTCAAGCCGGCGCAGCGGTAA back to top
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