mRNA_H-elongata_contig64406.14029.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: D7G462_ECTSI (Nicolin 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G462_ECTSI) HSP 1 Score: 221 bits (563), Expect = 1.690e-70 Identity = 113/188 (60.11%), Postives = 134/188 (71.28%), Query Frame = 1
Query: 7 PRKVPVLVGPLVRGRQTKPTPTYFEISFLNKDSGESPPR-VDAIVFRNFYCSHITIKQRRQQ-QLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHVKCVIWS--GLSSTAPEEKPTSDRSVVTSEVDLAHLCRGISKQVQIFGD 558
P +P +GPLVR RQT P PTYFE+SFL P R +DAIVF+NFYCSHITIKQRRQ+ A GK+G W T+LRDRPLMEDPH+EDDAQ+WHVV EE D EEYDA+S AP+RIYL+Q SPMWKTFGL HVK V WS G S+ +++ +D + L LCRGIS+QV+IFGD
Sbjct: 14 PYPIPAFIGPLVRSRQTTPCPTYFEVSFLESKLPRKPARRLDAIVFKNFYCSHITIKQRRQRFDTATAADCGKDGDPWLTILRDRPLMEDPHHEDDAQYWHVVRSEEFDPEEYDAESTAPIRIYLYQSSPMWKTFGLHHVKAVGWSRAGSSNGGRDDEREADGN-------LGDLCRGISEQVKIFGD 194
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A836CPK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 6.580e-22 Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1
Query: 13 KVPVLVGPLVRGRQTKPTPTYFEISFLNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAP---------LRIYLHQPSPMWKTFGLRHVK 423
++P+L+GPLV+ R +P YFE++ L ++PP VF+N+Y SH+T++ +R G + W TVL PLM DPHYE DAQHWHV+ + + E + + +R+ LHQ SP+W+ LRH K
Sbjct: 14 ELPILLGPLVQTRSQRPCLLYFEVTLLQPK--QTPPGA-VFVFQNYYASHVTLRVQR--------GGASDAFDWETVLDRHPLMRDPHYEGDAQHWHVLPLPQRVVELANGNEGGGGEGDGGVRCVRVCLHQSSPLWERVELRHFK 148
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A7S4DFE1_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DFE1_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 1.420e-20 Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query: 13 KVPVLVGPLVRGRQTKPTPTYFEISFLNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHVKC 426
+VP V P V + +P+ Y ++SF +P + + FRN+YC +ITIK+ G GK+ VW T+L LM+DPH+EDDAQ HV+ + + ++D LR YL+QPSP W++FGLR + C
Sbjct: 7 EVPFKVHPQVVKDEKRPSIIYQQVSFT------TPIELRFLCFRNYYCGYITIKRFM------VDGTGKK--VWQTILNRHQLMKDPHFEDDAQARHVIESSQFN-SKFDGGLIKALRFYLYQPSPSWRSFGLRQLTC 129
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A0H5QY21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QY21_9EUKA) HSP 1 Score: 92.4 bits (228), Expect = 4.250e-20 Identity = 55/135 (40.74%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 70 TYFEISF-LNKDSGESPPR---------------VDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHVKC 426
TY E+S+ + DS S PR +D IVFRNFYC +TI Q A G W T+LR LM DPHYEDDAQ+ H ++ +E + LR YL QPSP WK+FGLR + C
Sbjct: 7 TYQELSYTVTNDSAHSGPRPCLIYQEIQFSAPANIDHIVFRNFYCFALTITQST------ANGSSDGAPYWTTILRSYKLMTDPHYEDDAQYSHRISSDEFEEPFSREVPVYALRFYLEQPSPNWKSFGLRDLSC 135
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A3P3Y8X5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y8X5_PLABS) HSP 1 Score: 94.4 bits (233), Expect = 4.130e-19 Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 58 KPTPTYFEISFLNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHVKC 426
+P Y EI+F + P ++ I FRN+YC+ I+IKQ ++ A G + S W +L R LM D HYEDDAQH+H +++ E LR YL QPSP W++FGLR +KC
Sbjct: 62 RPCVIYQEIAF------DKPANIECIKFRNYYCASISIKQLTIPLVD-AFGTAAKESDWTAILSSRQLMTDAHYEDDAQHYHTISISEFGACFLKEIPVHALRFYLEQPSPNWRSFGLRDLKC 177
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A7S3JF62_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JF62_9SPIT) HSP 1 Score: 84.0 bits (206), Expect = 2.130e-17 Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 58 KPTPTYFEISFLNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHV 420
KP+ Y++I+F KDSG + ++F+NFY + ITIKQ + + +A ++ + W T+L + LM + H+E DAQ+WH++ E L +E++D + LRI+L+ PSP W F L+ +
Sbjct: 19 KPSRAYYDINFNAKDSG-----FNYMLFQNFYVASITIKQYKGENETKAEL--EKAANWKTILPNYKLMNNAHFEGDAQNWHIIGTE-LFNEKFDRSDLSVLRIFLNAPSPSWLDFYLKSI 131
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A7S4A4M5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4M5_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.570e-16 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 40 VRGRQTKPTPTYFEISF----LNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDA---------DSAAP---LRIYLHQPSPMWKTFGLRHVKCVI 432
++ R +P P Y +I+F + K +G +P R+DAI FRN Y + I++ QR+ + EG VW VLR++ LM D H EDDAQ +A + + +D+ D P LR L QPSP W+++ L+HVKC++
Sbjct: 80 LKARSDEPCPVYQDITFDAEAVIKAAGAAP-RLDAISFRNHYVASISVMQRQARP---------EGLVWVPVLREKHLMRDAHCEDDAQATTTLATSDFTN--FDSGLCGVAAGDDEGLPVGSLRFRLRQPSPTWRSYELKHVKCIM 214
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A7S0TAL6_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAL6_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.940e-13 Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = 1
Query: 49 RQTKPTPTYFEISFLNKDSGESPPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDA-----------DSAAPL---RIYLHQPSPMWKTFGLRHVKC 426
R +P P Y ++ F+ K + R+D IVFRN Y + I + QR+ + +G+ W VL D LM+ PH+EDDAQ WH + +D+ APL R + QPS MW T LRH++C
Sbjct: 33 RAERPCPIYQDVRFVPK---KEHARLDFIVFRNHYVASIAVYQRQAEG---------DGARWVEVLGDLCLMKRPHFEDDAQAWHTLYTSRF-RPAFDSHLCSGAAAASRSGEAPLGSLRFKIRQPSMMWSTIELRHLRC 159
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A8J5XP54_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XP54_DIALT) HSP 1 Score: 69.3 bits (168), Expect = 6.750e-11 Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 1
Query: 85 SFLNKDSGESPP-RVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDA-DSAAPLRIYLHQPSPMWKTFGLRHVKC 426
S L ++ SPP R+ AI F+N+Y + + + R + G S W L LM+DPH+EDDAQ +H + D DSA LR+ QPSP W FG R + C
Sbjct: 28 SRLTQELYFSPPARLRAITFQNYYSAAVAVHVRGRALPPATDLSGASASTWHVALETTQLMDDPHFEDDAQRFHSFDLTSPQLAPVDVLDSAHALRLTYFQPSPAWADFGARRLAC 143
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Match: A0A665TWE0_ECHNA (Nicolin 1 n=3 Tax=Carangiformes TaxID=1489907 RepID=A0A665TWE0_ECHNA) HSP 1 Score: 66.2 bits (160), Expect = 5.750e-10 Identity = 37/132 (28.03%), Postives = 65/132 (49.24%), Query Frame = 1
Query: 67 PTYFEISFLNKDSGES-------------PPRVDAIVFRNFYCSHITIKQRRQQQLERAPGIGKEGSVWATVLRDRPLMEDPHYEDDAQHWHVVAVEELDHEEYDADSAAPLRIYLHQPSPMWKTFGLRHVK 423
P Y +I D+ S ++ I F+N+Y +++T++ R+ + AP + W TVLRD PLM++PH E +Q ++ + ++ + + D A +R+ L QPS W F L ++K
Sbjct: 18 PVYLQIGDTKTDASHSGICVVDVTLPFGKAANIEEITFKNYYTAYVTVRLLRRSPGQDAP------AKWCTVLRDLPLMDNPHTEGGSQDYYSIHRAQM---QVEPDHVASVRLILRQPSSAWLNFSLENIK 140 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64406.14029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64406.14029.1 >prot_H-elongata_contig64406.14029.1 ID=prot_H-elongata_contig64406.14029.1|Name=mRNA_H-elongata_contig64406.14029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp MIPRKVPVLVGPLVRGRQTKPTPTYFEISFLNKDSGESPPRVDAIVFRNFback to top mRNA from alignment at H-elongata_contig64406:841..3114+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64406.14029.1 ID=mRNA_H-elongata_contig64406.14029.1|Name=mRNA_H-elongata_contig64406.14029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2274bp|location=Sequence derived from alignment at H-elongata_contig64406:841..3114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64406:841..3114+ >mRNA_H-elongata_contig64406.14029.1 ID=mRNA_H-elongata_contig64406.14029.1|Name=mRNA_H-elongata_contig64406.14029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig64406:841..3114+ (Himanthalia elongata Himel1 dioecious)back to top |