mRNA_H-elongata_contig6440.14028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6440.14028.1
Unique NamemRNA_H-elongata_contig6440.14028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.930e-40
Identity = 87/142 (61.27%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 NKEDDGVSLVGSQLPAFRDEPKSGGQGLCLNTNLVKKITVRESGKV-AD-GNLRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAVGGKM 420
            ++EDD V+ VGS       E KS GQGL L+TNLV+    RE   V AD G  RQVA VTVVF+LPDGSQ        + +FQLGQTVEVLK FVESE GIPMS Q ELYLGS LMMDPM+LLDYPE++G G+V I V G+M
Sbjct:   20 DEEDDVVAFVGSPRFTRNAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQ-------ADQEFQLGQTVEVLKSFVESEFGIPMSCQ-ELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEM 153          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 7.320e-22
Identity = 64/147 (43.54%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    7 EDDGVSLVGSQLPAFRDEPKS--GGQGLCLNTNLVKKITVRESGKVADGNLRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAVGGKMTIQEGKK 441
            +DD V+ VGS LP+   EPK+  G +GL ++  +  +   R   +         A V VVF LPDGS+       G   F++G TVEVLK FVE E  IPM   Q LYL  TLM+DP+SL DYP I+   D F+ VGG++  Q  KK
Sbjct:   22 DDDYVTAVGSALPSAA-EPKAALGLRGLDISAVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSE-------GEKHFKMGHTVEVLKSFVEEEFEIPMG-VQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQKK 159          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A6V1REP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1REP9_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 3.160e-18
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  154 RQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAVGGKMTIQEGKK 441
            RQ   VTVVF LPDGS         + +F LGQTVE LK +VE E  IPM  QQEL L   ++MDPMSLLDY EIN   +VFI+V G++  +E KK
Sbjct:  123 RQQTTVTVVFELPDGST-------ADKEFMLGQTVEFLKSYVEGEFDIPMG-QQELLLNGKVLMDPMSLLDYSEINPNEEVFISVQGELG-EESKK 209          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.780e-16
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  154 RQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTL--MMDPMSLLDYPEINGTGDVFIAVGGKMTIQEGK 438
            R   PV VVF+LPDGSQ+ H+       FQ+GQT+EVLK FV SE GIPM  Q +L+L      +MDP++LLDY +I+   +V + V G M +   K
Sbjct:   47 RATEPVIVVFDLPDGSQVEHK-------FQMGQTIEVLKSFVASECGIPMGGQ-DLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.230e-15
Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   79 GLCLNTNLVKKITVRESGKVADGNL--RQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGST--LMMDPMSLLDYPEINGTGDVFIAVGG 414
            GL L+    K+   + S +  +  +  R     T++F LPDGS + +       +FQ+GQTV+VLK ++ SE+GIPM+ QQ LYL ++  +++DPM+LLDYPEI+   ++ I V G
Sbjct:   54 GLGLDLTQAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQN-------EFQMGQTVQVLKSYIASEVGIPMA-QQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.030e-15
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   10 DDGVSLVGSQLPAFRDEPKSGGQGLCLNTNLVKKITVRESGKVADGNLRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAVGGKMTIQEGKK 441
            DD ++ +  +L +   EPK    G+ +  +L K     E+ +  D   R  APV VVF LPDGS+       G   F+LGQTVEVLK FVE E  I MS  + LYLG   M DP SL D+P ++      + V G++  +  KK
Sbjct:   12 DDLLATISPKLISPGAEPKPRSIGIDM-ASLAKSERNAENTEEDDIIKRLDAPVLVVFELPDGSE-------GEKTFKLGQTVEVLKAFVEDEFEIDMSASR-LYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQKK 146          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.440e-14
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  151 LRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYL----GSTLMMDPMSLLDYPEINGTGDVFIAVGGKMTI 426
            +    PV VVF+LPDGS +         +F +GQ+VEVLK ++ SE GI M  QQ L+L    GS L+MDPMSL DYP+I+   +  I V G+M +
Sbjct:   27 MEATTPVLVVFDLPDGSSVES-------EFAIGQSVEVLKSYIASECGIQMGDQQ-LFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEMEM 114          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 4.140e-14
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   76 QGLCLNTNLVKKITVRESGKVADGNLRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGST--LMMDPMSLLDYPEING 384
            +G+ LN  L  +   R +  VA     Q   + VVF+LPDGSQ       G   F+LGQ+VEVLK FVESE GIPM+ Q+ ++L S+   M++P+SLLDY E+ G
Sbjct:   50 RGMSLNLTLAAEAKARLNDPVAV----QEEFINVVFDLPDGSQ-------GEGNFKLGQSVEVLKSFVESEYGIPMATQR-MFLNSSEKQMLNPLSLLDYAEVKG 142          
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Match: A0A8K1CTH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTH2_PYTOL)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 37/112 (33.04%), Postives = 54/112 (48.21%), Query Frame = 1
Query:   73 GQGLCLNTNLVKKITVRESGKVADGNLRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIPMSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAV 408
            G  L L     ++    E  K+ D    Q   + V F LPD S +T         F+ GQTV+VLK ++E E+ I  S  Q L+L   LM+DP+SL D+  +     + + V
Sbjct:   10 GLSLALAHEDHREEAQEEESKLDDIIALQEEQIKVKFVLPDDSTITQA-------FKKGQTVQVLKCYLEEELEIQQSTAQ-LFLNDRLMLDPLSLTDFKGVENARTIEVHV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6440.14028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LMG4_ECTSI7.930e-4061.27Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
F0YBA1_AURAN7.320e-2243.54Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6V1REP9_HETAK3.160e-1854.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RY85_9STRA2.780e-1647.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HLV2_9STRA1.230e-1539.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SIH4_9STRA2.030e-1538.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2D6F3_9STRA1.440e-1445.83Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A482RPU6_9ARCH4.140e-1445.71Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8K1CTH2_PYTOL1.090e-533.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6440contigH-elongata_contig6440:4111..5658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog2880.D8LMG4
EggNOG OGs2D08N@1,2SD77@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-05_002660.1
Exons4
Model size444
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6440.14028.1prot_H-elongata_contig6440.14028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6440 4111..5658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.2655897-CDS-H-elongata_contig6440:4110..42421622931030.2655897-CDS-H-elongata_contig6440:4110..4242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4111..4242 -
1691679668.856755-CDS-H-elongata_contig6440:4110..42421691679668.856755-CDS-H-elongata_contig6440:4110..4242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4111..4242 -
1622931030.2840848-CDS-H-elongata_contig6440:4481..45891622931030.2840848-CDS-H-elongata_contig6440:4481..4589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4482..4589 -
1691679668.8704667-CDS-H-elongata_contig6440:4481..45891691679668.8704667-CDS-H-elongata_contig6440:4481..4589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4482..4589 -
1622931030.2952647-CDS-H-elongata_contig6440:4912..49421622931030.2952647-CDS-H-elongata_contig6440:4912..4942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4913..4942 -
1691679668.881018-CDS-H-elongata_contig6440:4912..49421691679668.881018-CDS-H-elongata_contig6440:4912..4942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 4913..4942 -
1622931030.3081317-CDS-H-elongata_contig6440:5484..56581622931030.3081317-CDS-H-elongata_contig6440:5484..5658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 5485..5658 -
1691679668.8912058-CDS-H-elongata_contig6440:5484..56581691679668.8912058-CDS-H-elongata_contig6440:5484..5658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6440 5485..5658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6440.14028.1

>prot_H-elongata_contig6440.14028.1 ID=prot_H-elongata_contig6440.14028.1|Name=mRNA_H-elongata_contig6440.14028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
NKEDDGVSLVGSQLPAFRDEPKSGGQGLCLNTNLVKKITVRESGKVADGN
LRQVAPVTVVFNLPDGSQLTHRLYFGNLQFQLGQTVEVLKGFVESEIGIP
MSRQQELYLGSTLMMDPMSLLDYPEINGTGDVFIAVGGKMTIQEGKK*
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mRNA from alignment at H-elongata_contig6440:4111..5658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6440.14028.1 ID=mRNA_H-elongata_contig6440.14028.1|Name=mRNA_H-elongata_contig6440.14028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1548bp|location=Sequence derived from alignment at H-elongata_contig6440:4111..5658- (Himanthalia elongata Himel1 dioecious)
AACAAGGAGGACGATGGGGTATCACTTGTTGGCTCCCAACTTCCTGCTTT CCGTGATGAGCCAAAATCGGGAGGTCAAGGCCTGTGCTTGAACACAAATC TAGTAAAGAAAATTACAGTTCGAGAAAGTGGCAAGGTGGCGGATGGAAAT CTTCGACAAGTTGCCCCTGTGACGGTGAGTTAGGGCCGTTTTAAACATAA AACAAAATGTCGAAATTTTTTACATTATTTTTTACAAACTGCGTCAAAAT GTTTTAAAAATTATCAGAATATTAGAAGCAACTCGTTCACACTTTTGGCC CGTAAATTGCTTCCAAGTTTTTGACACCAAATTGTGACAAACGCCTCGTT TAGTATGTTGAAATGTTTGATTTTTCAAATTATTTGACAAAAAAAGGGCA TGTTTAAAACGTCCCTTAATATCGTAGGGGAAATGCTGGAAACGCTCACG AGATAAGTTGGCGCCCTGAGAGTTGATGTGTAATGAAAACAGTGGAACGT AATCCCGTCTCCTGCGAACGAGCCTATGAATACTTTCTGCAGAACGACGC CGCTGATGACTCTACGGTTACCTTTGTTTAAACGTCATGGTCTTGGTTCT CCTGATATCGTCAATTGGTTGACATGTTATTTTCGACCTACCAGATGGCA GCCAAGCTGATGTTCAAACGGCATATTACTCTTATTCTCTCTGTATAATT ATCGATTGGTTTACAGGTGGTTTTCAATCTACCGGATGGCAGCCAAGTTG GTCAGGAGGCAAGCTTTCCGTGCGGTAGACGACAAGACGCGTGGCCCGGA CACCGGCTGGTCCTTTGCCAGAAAACAATTGTTTCGCCTGCTGTCGATCT GTGAAATAAAGCATACCGGTACCATTTTGAAGCATCACGGGCAGGCCGCT TAATAGTGACACGAAATGTAATACTGTAATACTGTATACAACAACTGCCT AGAAAAGGGATAGGCAAACCTTACTCAAGACGGGTGATGGTGATCGTGTA GCCTTACGGGTGATGGTGGGGATGTATATAGCTCTATAGAAATAAAAGAG AAATGAACACCCTTGTCAGTTAACCCACCGCCTTTACTTCGGAAATTTGC AGTTTCAGCTGGGACAAACCGTGGAAGTCCTCAAGGGCTTCGTCGAGTCA GAAATCGGGATACCCATGTCACGCCAGGTGTGACGCAGGGGGGGGGGTAT TCTTCGAGGAGCGAAGAAATCTTCAGCCTCATTTTCGCGAATATTTTCTC AACCACCAGGTACTGTACTCACTTTGAAATACTGTACTGAGTGTTAGTGA ATCTCAGTTAACGATAGAGTATAGAGTATAGACGAGACTCCTTCAGTCTC TGCATGCCAACCTGCGCACCTGGTGTCGATGTGTCCTTGTTTACCACTTG GTCGATGTTTTCAAAGCAGGAGCTGTACCTGGGGTCGACCTTAATGATGG ACCCAATGTCGTTACTCGACTATCCAGAAATTAATGGCACAGGAGACGTC TTCATAGCAGTTGGAGGGAAAATGACGATCCAGGAAGGCAAAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6440:4111..5658-

>mRNA_H-elongata_contig6440.14028.1 ID=mRNA_H-elongata_contig6440.14028.1|Name=mRNA_H-elongata_contig6440.14028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig6440:4111..5658- (Himanthalia elongata Himel1 dioecious)
AACAAGGAGGACGATGGGGTATCACTTGTTGGCTCCCAACTTCCTGCTTT
CCGTGATGAGCCAAAATCGGGAGGTCAAGGCCTGTGCTTGAACACAAATC
TAGTAAAGAAAATTACAGTTCGAGAAAGTGGCAAGGTGGCGGATGGAAAT
CTTCGACAAGTTGCCCCTGTGACGAACAAGGAGGACGATGGGGTATCACT
TGTTGGCTCCCAACTTCCTGCTTTCCGTGATGAGCCAAAATCGGGAGGTC
AAGGCCTGTGCTTGAACACAAATCTAGTAAAGAAAATTACAGTTCGAGAA
AGTGGCAAGGTGGCGGATGGAAATCTTCGACAAGTTGCCCCTGTGACGGT
GGTTTTCAATCTACCGGATGGCAGCCAAGTGGTTTTCAATCTACCGGATG
GCAGCCAATTAACCCACCGCCTTTACTTCGGAAATTTGCAGTTTCAGCTG
GGACAAACCGTGGAAGTCCTCAAGGGCTTCGTCGAGTCAGAAATCGGGAT
ACCCATGTCACGCCAGTTAACCCACCGCCTTTACTTCGGAAATTTGCAGT
TTCAGCTGGGACAAACCGTGGAAGTCCTCAAGGGCTTCGTCGAGTCAGAA
ATCGGGATACCCATGTCACGCCAGCAGGAGCTGTACCTGGGGTCGACCTT
AATGATGGACCCAATGTCGTTACTCGACTATCCAGAAATTAATGGCACAG
GAGACGTCTTCATAGCAGTTGGAGGGAAAATGACGATCCAGGAAGGCAAA
AAGTGACAGGAGCTGTACCTGGGGTCGACCTTAATGATGGACCCAATGTC
GTTACTCGACTATCCAGAAATTAATGGCACAGGAGACGTCTTCATAGCAG
TTGGAGGGAAAATGACGATCCAGGAAGGCAAAAAGTGA
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